Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:02041:02490
Extra
PDB:
ATOM 1 O3' G A2040 52.282 128.029 105.941 1.00 36.97 O
ATOM 2 P A A2041 52.735 127.937 104.398 1.00 38.37 P
ATOM 3 OP1 A A2041 53.132 126.538 104.124 1.00 36.36 O
ATOM 4 OP2 A A2041 53.691 129.033 104.118 1.00 38.76 O
ATOM 5 O5' A A2041 51.399 128.230 103.588 1.00 37.05 O
ATOM 6 C5' A A2041 50.263 127.363 103.701 1.00 36.82 C
ATOM 7 C4' A A2041 49.086 127.943 102.954 1.00 37.80 C
ATOM 8 O4' A A2041 48.897 129.311 103.387 1.00 38.97 O
ATOM 9 C3' A A2041 49.203 128.078 101.441 1.00 36.87 C
ATOM 10 O3' A A2041 48.877 126.859 100.797 1.00 36.18 O
ATOM 11 C2' A A2041 48.139 129.123 101.140 1.00 38.08 C
ATOM 12 O2' A A2041 46.828 128.587 101.160 1.00 40.17 O
ATOM 13 C1' A A2041 48.279 130.051 102.347 1.00 38.65 C
ATOM 14 N9 A A2041 49.050 131.269 102.100 1.00 37.13 N
ATOM 15 C8 A A2041 50.326 131.579 102.497 1.00 38.27 C
ATOM 16 N7 A A2041 50.719 132.772 102.129 1.00 37.69 N
ATOM 17 C5 A A2041 49.631 133.278 101.435 1.00 37.28 C
ATOM 18 C6 A A2041 49.416 134.497 100.784 1.00 36.69 C
ATOM 19 N6 A A2041 50.327 135.465 100.710 1.00 35.72 N
ATOM 20 N1 A A2041 48.216 134.688 100.195 1.00 36.64 N
ATOM 21 C2 A A2041 47.308 133.707 100.254 1.00 34.63 C
ATOM 22 N3 A A2041 47.397 132.519 100.827 1.00 34.60 N
ATOM 23 C4 A A2041 48.598 132.364 101.409 1.00 36.44 C
ATOM 24 P A A2042 49.639 126.432 99.451 1.00 38.40 P
ATOM 25 OP1 A A2042 49.677 127.586 98.506 1.00 38.47 O
ATOM 26 OP2 A A2042 48.992 125.168 99.034 1.00 39.32 O
ATOM 27 O5' A A2042 51.121 126.087 99.924 1.00 34.70 O
TER
ATOM 1 O3' U B2489 53.248 145.792 97.439 1.00 37.81 O
ATOM 2 P A B2490 52.688 145.302 98.858 1.00 39.50 P
ATOM 3 OP1 A B2490 52.378 146.511 99.629 1.00 41.59 O
ATOM 4 OP2 A B2490 53.564 144.269 99.444 1.00 41.94 O
ATOM 5 O5' A B2490 51.299 144.625 98.517 1.00 38.58 O
ATOM 6 C5' A B2490 51.214 143.482 97.664 1.00 37.03 C
ATOM 7 C4' A B2490 50.228 142.511 98.241 1.00 38.95 C
ATOM 8 O4' A B2490 50.952 141.406 98.828 1.00 39.47 O
ATOM 9 C3' A B2490 49.354 143.092 99.346 1.00 40.08 C
ATOM 10 O3' A B2490 48.066 142.520 99.314 1.00 39.85 O
ATOM 11 C2' A B2490 50.088 142.661 100.610 1.00 41.48 C
ATOM 12 O2' A B2490 49.215 142.509 101.706 1.00 43.91 O
ATOM 13 C1' A B2490 50.639 141.302 100.198 1.00 40.20 C
ATOM 14 N9 A B2490 51.861 140.919 100.898 1.00 40.36 N
ATOM 15 C8 A B2490 53.108 141.468 100.768 1.00 39.94 C
ATOM 16 N7 A B2490 54.029 140.857 101.469 1.00 40.86 N
ATOM 17 C5 A B2490 53.337 139.849 102.121 1.00 40.04 C
ATOM 18 C6 A B2490 53.747 138.845 103.009 1.00 39.92 C
ATOM 19 N6 A B2490 55.012 138.668 103.396 1.00 39.84 N
ATOM 20 N1 A B2490 52.802 138.011 103.489 1.00 39.75 N
ATOM 21 C2 A B2490 51.537 138.178 103.093 1.00 39.45 C
ATOM 22 N3 A B2490 51.031 139.073 102.256 1.00 40.84 N
ATOM 23 C4 A B2490 51.996 139.890 101.797 1.00 40.93 C
ATOM 24 P U B2491 46.845 143.355 98.704 1.00 40.87 P
ATOM 25 OP1 U B2491 47.391 144.365 97.768 1.00 39.24 O
ATOM 26 OP2 U B2491 45.973 143.780 99.821 1.00 40.81 O
ATOM 27 O5' U B2491 46.071 142.249 97.865 1.00 40.95 O
TER
ATOM 2 P A A2041 52.735 127.937 104.398 1.00 38.37 P
ATOM 3 OP1 A A2041 53.132 126.538 104.124 1.00 36.36 O
ATOM 4 OP2 A A2041 53.691 129.033 104.118 1.00 38.76 O
ATOM 5 O5' A A2041 51.399 128.230 103.588 1.00 37.05 O
ATOM 6 C5' A A2041 50.263 127.363 103.701 1.00 36.82 C
ATOM 7 C4' A A2041 49.086 127.943 102.954 1.00 37.80 C
ATOM 8 O4' A A2041 48.897 129.311 103.387 1.00 38.97 O
ATOM 9 C3' A A2041 49.203 128.078 101.441 1.00 36.87 C
ATOM 10 O3' A A2041 48.877 126.859 100.797 1.00 36.18 O
ATOM 11 C2' A A2041 48.139 129.123 101.140 1.00 38.08 C
ATOM 12 O2' A A2041 46.828 128.587 101.160 1.00 40.17 O
ATOM 13 C1' A A2041 48.279 130.051 102.347 1.00 38.65 C
ATOM 14 N9 A A2041 49.050 131.269 102.100 1.00 37.13 N
ATOM 15 C8 A A2041 50.326 131.579 102.497 1.00 38.27 C
ATOM 16 N7 A A2041 50.719 132.772 102.129 1.00 37.69 N
ATOM 17 C5 A A2041 49.631 133.278 101.435 1.00 37.28 C
ATOM 18 C6 A A2041 49.416 134.497 100.784 1.00 36.69 C
ATOM 19 N6 A A2041 50.327 135.465 100.710 1.00 35.72 N
ATOM 20 N1 A A2041 48.216 134.688 100.195 1.00 36.64 N
ATOM 21 C2 A A2041 47.308 133.707 100.254 1.00 34.63 C
ATOM 22 N3 A A2041 47.397 132.519 100.827 1.00 34.60 N
ATOM 23 C4 A A2041 48.598 132.364 101.409 1.00 36.44 C
ATOM 24 P A A2042 49.639 126.432 99.451 1.00 38.40 P
ATOM 25 OP1 A A2042 49.677 127.586 98.506 1.00 38.47 O
ATOM 26 OP2 A A2042 48.992 125.168 99.034 1.00 39.32 O
ATOM 27 O5' A A2042 51.121 126.087 99.924 1.00 34.70 O
TER
ATOM 1 O3' U B2489 53.248 145.792 97.439 1.00 37.81 O
ATOM 2 P A B2490 52.688 145.302 98.858 1.00 39.50 P
ATOM 3 OP1 A B2490 52.378 146.511 99.629 1.00 41.59 O
ATOM 4 OP2 A B2490 53.564 144.269 99.444 1.00 41.94 O
ATOM 5 O5' A B2490 51.299 144.625 98.517 1.00 38.58 O
ATOM 6 C5' A B2490 51.214 143.482 97.664 1.00 37.03 C
ATOM 7 C4' A B2490 50.228 142.511 98.241 1.00 38.95 C
ATOM 8 O4' A B2490 50.952 141.406 98.828 1.00 39.47 O
ATOM 9 C3' A B2490 49.354 143.092 99.346 1.00 40.08 C
ATOM 10 O3' A B2490 48.066 142.520 99.314 1.00 39.85 O
ATOM 11 C2' A B2490 50.088 142.661 100.610 1.00 41.48 C
ATOM 12 O2' A B2490 49.215 142.509 101.706 1.00 43.91 O
ATOM 13 C1' A B2490 50.639 141.302 100.198 1.00 40.20 C
ATOM 14 N9 A B2490 51.861 140.919 100.898 1.00 40.36 N
ATOM 15 C8 A B2490 53.108 141.468 100.768 1.00 39.94 C
ATOM 16 N7 A B2490 54.029 140.857 101.469 1.00 40.86 N
ATOM 17 C5 A B2490 53.337 139.849 102.121 1.00 40.04 C
ATOM 18 C6 A B2490 53.747 138.845 103.009 1.00 39.92 C
ATOM 19 N6 A B2490 55.012 138.668 103.396 1.00 39.84 N
ATOM 20 N1 A B2490 52.802 138.011 103.489 1.00 39.75 N
ATOM 21 C2 A B2490 51.537 138.178 103.093 1.00 39.45 C
ATOM 22 N3 A B2490 51.031 139.073 102.256 1.00 40.84 N
ATOM 23 C4 A B2490 51.996 139.890 101.797 1.00 40.93 C
ATOM 24 P U B2491 46.845 143.355 98.704 1.00 40.87 P
ATOM 25 OP1 U B2491 47.391 144.365 97.768 1.00 39.24 O
ATOM 26 OP2 U B2491 45.973 143.780 99.821 1.00 40.81 O
ATOM 27 O5' U B2491 46.071 142.249 97.865 1.00 40.95 O
TER
Atoms:
OP1: (53.132,126.538,104.124)
OP2: (53.691,129.033,104.118)
C3': (49.203,128.078,101.441)
C1': (48.279,130.051,102.347)
C5': (50.263,127.363,103.701)
O4': (48.897,129.311,103.387)
C8: (50.326,131.579,102.497)
O2': (46.828,128.587,101.160)
C6: (49.416,134.497,100.784)
C5: (49.631,133.278,101.435)
C4: (48.598,132.364,101.409)
P: (52.735,127.937,104.398)
C4': (49.086,127.943,102.954)
C2': (48.139,129.123,101.140)
C2: (47.308,133.707,100.254)
N1: (48.216,134.688,100.195)
N3: (47.397,132.519,100.827)
N6: (50.327,135.465,100.710)
N7: (50.719,132.772,102.129)
N9: (49.050,131.269,102.100)
O5': (51.399,128.230,103.588)
O3': (48.877,126.859,100.797)
OP2: (53.691,129.033,104.118)
C3': (49.203,128.078,101.441)
C1': (48.279,130.051,102.347)
C5': (50.263,127.363,103.701)
O4': (48.897,129.311,103.387)
C8: (50.326,131.579,102.497)
O2': (46.828,128.587,101.160)
C6: (49.416,134.497,100.784)
C5: (49.631,133.278,101.435)
C4: (48.598,132.364,101.409)
P: (52.735,127.937,104.398)
C4': (49.086,127.943,102.954)
C2': (48.139,129.123,101.140)
C2: (47.308,133.707,100.254)
N1: (48.216,134.688,100.195)
N3: (47.397,132.519,100.827)
N6: (50.327,135.465,100.710)
N7: (50.719,132.772,102.129)
N9: (49.050,131.269,102.100)
O5': (51.399,128.230,103.588)
O3': (48.877,126.859,100.797)
OP1: (52.378,146.511,99.629)
OP2: (53.564,144.269,99.444)
C3': (49.354,143.092,99.346)
C1': (50.639,141.302,100.198)
C5': (51.214,143.482,97.664)
O4': (50.952,141.406,98.828)
C8: (53.108,141.468,100.768)
O2': (49.215,142.509,101.706)
C6: (53.747,138.845,103.009)
C5: (53.337,139.849,102.121)
C4: (51.996,139.890,101.797)
P: (52.688,145.302,98.858)
C4': (50.228,142.511,98.241)
C2': (50.088,142.661,100.610)
C2: (51.537,138.178,103.093)
N1: (52.802,138.011,103.489)
N3: (51.031,139.073,102.256)
N6: (55.012,138.668,103.396)
N7: (54.029,140.857,101.469)
N9: (51.861,140.919,100.898)
O5': (51.299,144.625,98.517)
O3': (48.066,142.520,99.314)
OP2: (53.564,144.269,99.444)
C3': (49.354,143.092,99.346)
C1': (50.639,141.302,100.198)
C5': (51.214,143.482,97.664)
O4': (50.952,141.406,98.828)
C8: (53.108,141.468,100.768)
O2': (49.215,142.509,101.706)
C6: (53.747,138.845,103.009)
C5: (53.337,139.849,102.121)
C4: (51.996,139.890,101.797)
P: (52.688,145.302,98.858)
C4': (50.228,142.511,98.241)
C2': (50.088,142.661,100.610)
C2: (51.537,138.178,103.093)
N1: (52.802,138.011,103.489)
N3: (51.031,139.073,102.256)
N6: (55.012,138.668,103.396)
N7: (54.029,140.857,101.469)
N9: (51.861,140.919,100.898)
O5': (51.299,144.625,98.517)
O3': (48.066,142.520,99.314)
Image (generated by PyMOL):