Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01937:01943
Extra
PDB:
ATOM 1 O3' C A1936 105.339 135.080 127.170 1.00 54.98 O
ATOM 2 P A A1937 104.408 135.715 128.309 1.00 55.35 P
ATOM 3 OP1 A A1937 105.050 136.980 128.756 1.00 56.71 O
ATOM 4 OP2 A A1937 104.074 134.657 129.298 1.00 53.71 O
ATOM 5 O5' A A1937 103.078 136.126 127.551 1.00 56.79 O
ATOM 6 C5' A A1937 103.075 137.198 126.596 1.00 57.89 C
ATOM 7 C4' A A1937 101.801 137.164 125.800 1.00 58.11 C
ATOM 8 O4' A A1937 101.737 135.910 125.071 1.00 59.20 O
ATOM 9 C3' A A1937 100.535 137.170 126.637 1.00 56.74 C
ATOM 10 O3' A A1937 100.179 138.490 126.998 1.00 56.30 O
ATOM 11 C2' A A1937 99.533 136.534 125.692 1.00 58.53 C
ATOM 12 O2' A A1937 99.097 137.436 124.697 1.00 58.92 O
ATOM 13 C1' A A1937 100.397 135.455 125.034 1.00 60.31 C
ATOM 14 N9 A A1937 100.337 134.171 125.728 1.00 61.49 N
ATOM 15 C8 A A1937 101.177 133.693 126.697 1.00 62.51 C
ATOM 16 N7 A A1937 100.865 132.496 127.123 1.00 63.82 N
ATOM 17 C5 A A1937 99.742 132.164 126.384 1.00 64.21 C
ATOM 18 C6 A A1937 98.933 131.016 126.358 1.00 65.49 C
ATOM 19 N6 A A1937 99.141 129.944 127.126 1.00 67.55 N
ATOM 20 N1 A A1937 97.890 131.005 125.503 1.00 65.57 N
ATOM 21 C2 A A1937 97.686 132.078 124.729 1.00 65.20 C
ATOM 22 N3 A A1937 98.376 133.212 124.661 1.00 64.06 N
ATOM 23 C4 A A1937 99.404 133.189 125.523 1.00 63.44 C
ATOM 24 P U A1938 99.723 138.809 128.504 1.00 57.46 P
ATOM 25 OP1 U A1938 99.759 140.285 128.696 1.00 56.67 O
ATOM 26 OP2 U A1938 100.498 137.927 129.416 1.00 56.64 O
ATOM 27 O5' U A1938 98.201 138.347 128.557 1.00 56.41 O
TER
ATOM 1 O3' U B1942 92.946 125.030 117.571 1.00 39.34 O
ATOM 2 P A B1943 94.401 125.544 117.175 1.00 44.26 P
ATOM 3 OP1 A B1943 94.868 124.805 115.973 1.00 45.15 O
ATOM 4 OP2 A B1943 95.216 125.521 118.411 1.00 46.88 O
ATOM 5 O5' A B1943 94.157 127.060 116.769 1.00 43.26 O
ATOM 6 C5' A B1943 93.147 127.403 115.823 1.00 41.46 C
ATOM 7 C4' A B1943 93.119 128.888 115.614 1.00 39.58 C
ATOM 8 O4' A B1943 92.739 129.549 116.845 1.00 37.59 O
ATOM 9 C3' A B1943 94.445 129.524 115.255 1.00 38.58 C
ATOM 10 O3' A B1943 94.737 129.379 113.875 1.00 39.44 O
ATOM 11 C2' A B1943 94.196 130.975 115.627 1.00 40.50 C
ATOM 12 O2' A B1943 93.422 131.657 114.666 1.00 44.26 O
ATOM 13 C1' A B1943 93.367 130.818 116.903 1.00 39.98 C
ATOM 14 N9 A B1943 94.186 130.887 118.113 1.00 41.05 N
ATOM 15 C8 A B1943 94.295 129.963 119.123 1.00 41.59 C
ATOM 16 N7 A B1943 95.106 130.325 120.082 1.00 42.22 N
ATOM 17 C5 A B1943 95.569 131.571 119.678 1.00 41.43 C
ATOM 18 C6 A B1943 96.471 132.484 120.259 1.00 41.13 C
ATOM 19 N6 A B1943 97.111 132.265 121.411 1.00 41.00 N
ATOM 20 N1 A B1943 96.707 133.637 119.600 1.00 39.53 N
ATOM 21 C2 A B1943 96.089 133.841 118.427 1.00 39.86 C
ATOM 22 N3 A B1943 95.237 133.058 117.775 1.00 38.93 N
ATOM 23 C4 A B1943 95.012 131.927 118.465 1.00 40.17 C
ATOM 24 P G B1944 96.226 128.999 113.411 1.00 41.29 P
ATOM 25 OP1 G B1944 96.261 128.959 111.927 1.00 41.21 O
ATOM 26 OP2 G B1944 96.637 127.806 114.178 1.00 42.55 O
ATOM 27 O5' G B1944 97.094 130.249 113.872 1.00 43.08 O
TER
ATOM 2 P A A1937 104.408 135.715 128.309 1.00 55.35 P
ATOM 3 OP1 A A1937 105.050 136.980 128.756 1.00 56.71 O
ATOM 4 OP2 A A1937 104.074 134.657 129.298 1.00 53.71 O
ATOM 5 O5' A A1937 103.078 136.126 127.551 1.00 56.79 O
ATOM 6 C5' A A1937 103.075 137.198 126.596 1.00 57.89 C
ATOM 7 C4' A A1937 101.801 137.164 125.800 1.00 58.11 C
ATOM 8 O4' A A1937 101.737 135.910 125.071 1.00 59.20 O
ATOM 9 C3' A A1937 100.535 137.170 126.637 1.00 56.74 C
ATOM 10 O3' A A1937 100.179 138.490 126.998 1.00 56.30 O
ATOM 11 C2' A A1937 99.533 136.534 125.692 1.00 58.53 C
ATOM 12 O2' A A1937 99.097 137.436 124.697 1.00 58.92 O
ATOM 13 C1' A A1937 100.397 135.455 125.034 1.00 60.31 C
ATOM 14 N9 A A1937 100.337 134.171 125.728 1.00 61.49 N
ATOM 15 C8 A A1937 101.177 133.693 126.697 1.00 62.51 C
ATOM 16 N7 A A1937 100.865 132.496 127.123 1.00 63.82 N
ATOM 17 C5 A A1937 99.742 132.164 126.384 1.00 64.21 C
ATOM 18 C6 A A1937 98.933 131.016 126.358 1.00 65.49 C
ATOM 19 N6 A A1937 99.141 129.944 127.126 1.00 67.55 N
ATOM 20 N1 A A1937 97.890 131.005 125.503 1.00 65.57 N
ATOM 21 C2 A A1937 97.686 132.078 124.729 1.00 65.20 C
ATOM 22 N3 A A1937 98.376 133.212 124.661 1.00 64.06 N
ATOM 23 C4 A A1937 99.404 133.189 125.523 1.00 63.44 C
ATOM 24 P U A1938 99.723 138.809 128.504 1.00 57.46 P
ATOM 25 OP1 U A1938 99.759 140.285 128.696 1.00 56.67 O
ATOM 26 OP2 U A1938 100.498 137.927 129.416 1.00 56.64 O
ATOM 27 O5' U A1938 98.201 138.347 128.557 1.00 56.41 O
TER
ATOM 1 O3' U B1942 92.946 125.030 117.571 1.00 39.34 O
ATOM 2 P A B1943 94.401 125.544 117.175 1.00 44.26 P
ATOM 3 OP1 A B1943 94.868 124.805 115.973 1.00 45.15 O
ATOM 4 OP2 A B1943 95.216 125.521 118.411 1.00 46.88 O
ATOM 5 O5' A B1943 94.157 127.060 116.769 1.00 43.26 O
ATOM 6 C5' A B1943 93.147 127.403 115.823 1.00 41.46 C
ATOM 7 C4' A B1943 93.119 128.888 115.614 1.00 39.58 C
ATOM 8 O4' A B1943 92.739 129.549 116.845 1.00 37.59 O
ATOM 9 C3' A B1943 94.445 129.524 115.255 1.00 38.58 C
ATOM 10 O3' A B1943 94.737 129.379 113.875 1.00 39.44 O
ATOM 11 C2' A B1943 94.196 130.975 115.627 1.00 40.50 C
ATOM 12 O2' A B1943 93.422 131.657 114.666 1.00 44.26 O
ATOM 13 C1' A B1943 93.367 130.818 116.903 1.00 39.98 C
ATOM 14 N9 A B1943 94.186 130.887 118.113 1.00 41.05 N
ATOM 15 C8 A B1943 94.295 129.963 119.123 1.00 41.59 C
ATOM 16 N7 A B1943 95.106 130.325 120.082 1.00 42.22 N
ATOM 17 C5 A B1943 95.569 131.571 119.678 1.00 41.43 C
ATOM 18 C6 A B1943 96.471 132.484 120.259 1.00 41.13 C
ATOM 19 N6 A B1943 97.111 132.265 121.411 1.00 41.00 N
ATOM 20 N1 A B1943 96.707 133.637 119.600 1.00 39.53 N
ATOM 21 C2 A B1943 96.089 133.841 118.427 1.00 39.86 C
ATOM 22 N3 A B1943 95.237 133.058 117.775 1.00 38.93 N
ATOM 23 C4 A B1943 95.012 131.927 118.465 1.00 40.17 C
ATOM 24 P G B1944 96.226 128.999 113.411 1.00 41.29 P
ATOM 25 OP1 G B1944 96.261 128.959 111.927 1.00 41.21 O
ATOM 26 OP2 G B1944 96.637 127.806 114.178 1.00 42.55 O
ATOM 27 O5' G B1944 97.094 130.249 113.872 1.00 43.08 O
TER
Atoms:
OP1: (105.050,136.980,128.756)
OP2: (104.074,134.657,129.298)
C3': (100.535,137.170,126.637)
C1': (100.397,135.455,125.034)
C5': (103.075,137.198,126.596)
O4': (101.737,135.910,125.071)
C8: (101.177,133.693,126.697)
O2': (99.097,137.436,124.697)
C6: (98.933,131.016,126.358)
C5: (99.742,132.164,126.384)
C4: (99.404,133.189,125.523)
P: (104.408,135.715,128.309)
C4': (101.801,137.164,125.800)
C2': (99.533,136.534,125.692)
C2: (97.686,132.078,124.729)
N1: (97.890,131.005,125.503)
N3: (98.376,133.212,124.661)
N6: (99.141,129.944,127.126)
N7: (100.865,132.496,127.123)
N9: (100.337,134.171,125.728)
O5': (103.078,136.126,127.551)
O3': (100.179,138.490,126.998)
OP2: (104.074,134.657,129.298)
C3': (100.535,137.170,126.637)
C1': (100.397,135.455,125.034)
C5': (103.075,137.198,126.596)
O4': (101.737,135.910,125.071)
C8: (101.177,133.693,126.697)
O2': (99.097,137.436,124.697)
C6: (98.933,131.016,126.358)
C5: (99.742,132.164,126.384)
C4: (99.404,133.189,125.523)
P: (104.408,135.715,128.309)
C4': (101.801,137.164,125.800)
C2': (99.533,136.534,125.692)
C2: (97.686,132.078,124.729)
N1: (97.890,131.005,125.503)
N3: (98.376,133.212,124.661)
N6: (99.141,129.944,127.126)
N7: (100.865,132.496,127.123)
N9: (100.337,134.171,125.728)
O5': (103.078,136.126,127.551)
O3': (100.179,138.490,126.998)
OP1: (94.868,124.805,115.973)
OP2: (95.216,125.521,118.411)
C3': (94.445,129.524,115.255)
C1': (93.367,130.818,116.903)
C5': (93.147,127.403,115.823)
O4': (92.739,129.549,116.845)
C8: (94.295,129.963,119.123)
O2': (93.422,131.657,114.666)
C6: (96.471,132.484,120.259)
C5: (95.569,131.571,119.678)
C4: (95.012,131.927,118.465)
P: (94.401,125.544,117.175)
C4': (93.119,128.888,115.614)
C2': (94.196,130.975,115.627)
C2: (96.089,133.841,118.427)
N1: (96.707,133.637,119.600)
N3: (95.237,133.058,117.775)
N6: (97.111,132.265,121.411)
N7: (95.106,130.325,120.082)
N9: (94.186,130.887,118.113)
O5': (94.157,127.060,116.769)
O3': (94.737,129.379,113.875)
OP2: (95.216,125.521,118.411)
C3': (94.445,129.524,115.255)
C1': (93.367,130.818,116.903)
C5': (93.147,127.403,115.823)
O4': (92.739,129.549,116.845)
C8: (94.295,129.963,119.123)
O2': (93.422,131.657,114.666)
C6: (96.471,132.484,120.259)
C5: (95.569,131.571,119.678)
C4: (95.012,131.927,118.465)
P: (94.401,125.544,117.175)
C4': (93.119,128.888,115.614)
C2': (94.196,130.975,115.627)
C2: (96.089,133.841,118.427)
N1: (96.707,133.637,119.600)
N3: (95.237,133.058,117.775)
N6: (97.111,132.265,121.411)
N7: (95.106,130.325,120.082)
N9: (94.186,130.887,118.113)
O5': (94.157,127.060,116.769)
O3': (94.737,129.379,113.875)
Image (generated by PyMOL):