ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:12203:12734

Extra

PDB:
ATOM 1 O3' G A2202 37.909 15.663 54.577 1.00 32.25 O
ATOM 2 P G A2203 38.254 14.774 55.872 1.00 39.86 P
ATOM 3 OP1 G A2203 38.318 13.397 55.416 1.00 39.69 O
ATOM 4 OP2 G A2203 37.288 15.133 56.935 1.00 39.89 O
ATOM 5 O5' G A2203 39.705 15.268 56.285 1.00 39.86 O
ATOM 6 C5' G A2203 40.844 14.788 55.606 1.00 39.80 C
ATOM 7 C4' G A2203 42.108 15.379 56.150 1.00 39.83 C
ATOM 8 O4' G A2203 41.957 16.776 56.367 1.00 40.04 O
ATOM 9 C3' G A2203 42.559 14.870 57.478 1.00 39.69 C
ATOM 10 O3' G A2203 43.122 13.590 57.341 1.00 39.51 O
ATOM 11 C2' G A2203 43.569 15.963 57.893 1.00 39.82 C
ATOM 12 O2' G A2203 44.856 15.780 57.277 1.00 39.81 O
ATOM 13 C1' G A2203 42.947 17.212 57.278 1.00 40.05 C
ATOM 14 N9 G A2203 42.337 18.096 58.296 1.00 40.16 N
ATOM 15 C8 G A2203 41.018 18.115 58.600 1.00 40.18 C
ATOM 16 N7 G A2203 40.720 18.972 59.516 1.00 40.30 N
ATOM 17 C5 G A2203 41.914 19.554 59.879 1.00 40.37 C
ATOM 18 C6 G A2203 42.171 20.569 60.854 1.00 40.52 C
ATOM 19 O6 G A2203 41.394 21.157 61.622 1.00 40.63 O
ATOM 20 N1 G A2203 43.520 20.882 60.879 1.00 40.56 N
ATOM 21 C2 G A2203 44.455 20.302 60.069 1.00 40.47 C
ATOM 22 N2 G A2203 45.691 20.750 60.218 1.00 40.54 N
ATOM 23 N3 G A2203 44.201 19.358 59.165 1.00 40.32 N
ATOM 24 C4 G A2203 42.913 19.025 59.115 1.00 40.28 C
ATOM 25 P A A2204 42.828 12.385 58.347 1.00 65.04 P
ATOM 26 OP1 A A2204 43.178 12.843 59.680 1.00 65.05 O
ATOM 27 OP2 A A2204 43.518 11.222 57.791 1.00 64.91 O
ATOM 28 O5' A A2204 41.291 12.141 58.227 1.00 65.03 O
TER

ATOM 1 O3' U B2733 36.902 25.050 71.431 1.00 47.17 O
ATOM 2 P A B2734 36.668 26.243 70.362 1.00 43.83 P
ATOM 3 OP1 A B2734 36.900 27.515 71.109 1.00 44.14 O
ATOM 4 OP2 A B2734 35.350 26.036 69.721 1.00 43.81 O
ATOM 5 O5' A B2734 37.842 26.012 69.305 1.00 43.70 O
ATOM 6 C5' A B2734 39.187 26.072 69.710 1.00 43.69 C
ATOM 7 C4' A B2734 40.097 26.144 68.538 1.00 43.65 C
ATOM 8 O4' A B2734 39.909 24.981 67.725 1.00 43.38 O
ATOM 9 C3' A B2734 39.865 27.305 67.606 1.00 43.89 C
ATOM 10 O3' A B2734 40.541 28.472 68.042 1.00 44.15 O
ATOM 11 C2' A B2734 40.370 26.772 66.272 1.00 43.73 C
ATOM 12 O2' A B2734 41.765 26.946 66.135 1.00 43.74 O
ATOM 13 C1' A B2734 40.075 25.295 66.378 1.00 43.41 C
ATOM 14 N9 A B2734 38.845 24.976 65.686 1.00 43.37 N
ATOM 15 C8 A B2734 37.590 25.080 66.175 1.00 43.44 C
ATOM 16 N7 A B2734 36.698 24.772 65.294 1.00 43.40 N
ATOM 17 C5 A B2734 37.431 24.466 64.157 1.00 43.30 C
ATOM 18 C6 A B2734 37.085 24.038 62.865 1.00 43.23 C
ATOM 19 N6 A B2734 35.826 23.863 62.462 1.00 43.25 N
ATOM 20 N1 A B2734 38.093 23.820 61.969 1.00 43.16 N
ATOM 21 C2 A B2734 39.354 24.007 62.355 1.00 43.15 C
ATOM 22 N3 A B2734 39.784 24.373 63.539 1.00 43.21 N
ATOM 23 C4 A B2734 38.771 24.610 64.385 1.00 43.29 C
ATOM 24 P C B2735 40.193 29.934 67.455 1.00 50.23 P
ATOM 25 OP1 C B2735 39.202 30.545 68.353 1.00 50.43 O
ATOM 26 OP2 C B2735 39.870 29.807 66.004 1.00 50.18 O
ATOM 27 O5' C B2735 41.528 30.687 67.609 1.00 50.39 O
TER

Atoms:
OP1: (38.318,13.397,55.416)
OP2: (37.288,15.133,56.935)
C3': (42.559,14.870,57.478)
C1': (42.947,17.212,57.278)
C5': (40.844,14.788,55.606)
O6: (41.394,21.157,61.622)
O4': (41.957,16.776,56.367)
C8: (41.018,18.115,58.600)
C2: (44.455,20.302,60.069)
C6: (42.171,20.569,60.854)
C5: (41.914,19.554,59.879)
C4: (42.913,19.025,59.115)
P: (38.254,14.774,55.872)
C4': (42.108,15.379,56.150)
C2': (43.569,15.963,57.893)
O2': (44.856,15.780,57.277)
N1: (43.520,20.882,60.879)
N2: (45.691,20.750,60.218)
N3: (44.201,19.358,59.165)
N7: (40.720,18.972,59.516)
N9: (42.337,18.096,58.296)
O5': (39.705,15.268,56.285)
O3': (43.122,13.590,57.341)
OP1: (36.900,27.515,71.109)
OP2: (35.350,26.036,69.721)
C3': (39.865,27.305,67.606)
C1': (40.075,25.295,66.378)
C5': (39.187,26.072,69.710)
O4': (39.909,24.981,67.725)
C8: (37.590,25.080,66.175)
O2': (41.765,26.946,66.135)
C6: (37.085,24.038,62.865)
C5: (37.431,24.466,64.157)
C4: (38.771,24.610,64.385)
P: (36.668,26.243,70.362)
C4': (40.097,26.144,68.538)
C2': (40.370,26.772,66.272)
C2: (39.354,24.007,62.355)
N1: (38.093,23.820,61.969)
N3: (39.784,24.373,63.539)
N6: (35.826,23.863,62.462)
N7: (36.698,24.772,65.294)
N9: (38.845,24.976,65.686)
O5': (37.842,26.012,69.305)
O3': (40.541,28.472,68.042)
Image (generated by PyMOL):
PyMOL image
show in jmol