Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5K:E54:E57
Extra
PDB:
ATOM 1 O3' G A 53 6.394 8.572 105.799 1.00 47.05 O
ATOM 2 P G A 54 5.448 8.231 107.041 1.00 59.19 P
ATOM 3 OP1 G A 54 5.587 6.775 107.309 1.00 66.32 O
ATOM 4 OP2 G A 54 4.098 8.801 106.767 1.00 50.96 O
ATOM 5 O5' G A 54 6.164 9.004 108.233 1.00 41.67 O
ATOM 6 C5' G A 54 7.573 9.188 108.198 1.00 58.88 C
ATOM 7 C4' G A 54 8.029 10.009 109.372 1.00 55.59 C
ATOM 8 O4' G A 54 7.690 11.407 109.174 1.00 57.13 O
ATOM 9 C3' G A 54 7.312 9.592 110.628 1.00 60.31 C
ATOM 10 O3' G A 54 8.082 8.862 111.583 1.00 76.20 O
ATOM 11 C2' G A 54 6.159 10.583 110.836 1.00 54.07 C
ATOM 12 O2' G A 54 5.913 10.987 112.164 1.00 54.57 O
ATOM 13 C1' G A 54 6.649 11.799 110.045 1.00 40.65 C
ATOM 14 N9 G A 54 5.663 12.531 109.259 1.00 55.64 N
ATOM 15 C8 G A 54 4.581 12.032 108.579 1.00 55.27 C
ATOM 16 N7 G A 54 3.929 12.950 107.913 1.00 51.87 N
ATOM 17 C5 G A 54 4.614 14.125 108.185 1.00 54.57 C
ATOM 18 C6 G A 54 4.384 15.454 107.738 1.00 58.22 C
ATOM 19 O6 G A 54 3.510 15.871 106.983 1.00 63.31 O
ATOM 20 N1 G A 54 5.313 16.339 108.262 1.00 63.82 N
ATOM 21 C2 G A 54 6.338 16.001 109.098 1.00 58.47 C
ATOM 22 N2 G A 54 7.128 17.004 109.487 1.00 52.54 N
ATOM 23 N3 G A 54 6.573 14.768 109.520 1.00 61.53 N
ATOM 24 C4 G A 54 5.676 13.887 109.026 1.00 53.49 C
ATOM 25 P U A 55 8.517 9.539 112.963 1.00 57.14 P
ATOM 26 OP1 U A 55 8.388 11.012 112.849 1.00 81.15 O
ATOM 27 OP2 U A 55 9.820 8.952 113.331 1.00 70.70 O
ATOM 28 O5' U A 55 7.419 8.995 113.974 1.00 68.32 O
TER
ATOM 1 O3' A B 56 2.886 11.020 112.872 1.00 74.54 O
ATOM 2 P U B 57 1.882 9.967 112.191 1.00 62.67 P
ATOM 3 OP1 U B 57 2.707 8.971 111.465 1.00 93.25 O
ATOM 4 OP2 U B 57 0.860 10.742 111.454 1.00 67.21 O
ATOM 5 O5' U B 57 1.201 9.216 113.429 1.00 69.22 O
ATOM 6 C5' U B 57 -0.075 8.582 113.292 1.00 75.00 C
ATOM 7 C4' U B 57 -0.319 7.559 114.401 1.00 73.43 C
ATOM 8 O4' U B 57 0.659 6.486 114.317 1.00 67.93 O
ATOM 9 C3' U B 57 -0.154 8.166 115.795 1.00 60.57 C
ATOM 10 O3' U B 57 -1.180 7.787 116.713 1.00 62.94 O
ATOM 11 C2' U B 57 1.249 7.785 116.255 1.00 55.02 C
ATOM 12 O2' U B 57 1.267 7.431 117.617 1.00 64.75 O
ATOM 13 C1' U B 57 1.488 6.508 115.454 1.00 60.09 C
ATOM 14 N1 U B 57 2.853 6.104 115.107 1.00 65.93 N
ATOM 15 C2 U B 57 3.518 5.346 116.047 1.00 72.28 C
ATOM 16 O2 U B 57 3.015 5.042 117.117 1.00 78.99 O
ATOM 17 N3 U B 57 4.784 4.955 115.694 1.00 68.25 N
ATOM 18 C4 U B 57 5.439 5.244 114.517 1.00 72.28 C
ATOM 19 O4 U B 57 6.586 4.829 114.348 1.00 65.41 O
ATOM 20 C5 U B 57 4.682 6.042 113.592 1.00 70.11 C
ATOM 21 C6 U B 57 3.444 6.437 113.915 1.00 67.10 C
ATOM 22 P A B 58 -2.548 8.620 116.797 1.00 74.08 P
ATOM 23 OP1 A B 58 -3.368 8.017 117.873 1.00 74.12 O
ATOM 24 OP2 A B 58 -3.106 8.733 115.425 1.00 73.57 O
ATOM 25 O5' A B 58 -2.089 10.063 117.279 1.00 67.65 O
TER
ATOM 2 P G A 54 5.448 8.231 107.041 1.00 59.19 P
ATOM 3 OP1 G A 54 5.587 6.775 107.309 1.00 66.32 O
ATOM 4 OP2 G A 54 4.098 8.801 106.767 1.00 50.96 O
ATOM 5 O5' G A 54 6.164 9.004 108.233 1.00 41.67 O
ATOM 6 C5' G A 54 7.573 9.188 108.198 1.00 58.88 C
ATOM 7 C4' G A 54 8.029 10.009 109.372 1.00 55.59 C
ATOM 8 O4' G A 54 7.690 11.407 109.174 1.00 57.13 O
ATOM 9 C3' G A 54 7.312 9.592 110.628 1.00 60.31 C
ATOM 10 O3' G A 54 8.082 8.862 111.583 1.00 76.20 O
ATOM 11 C2' G A 54 6.159 10.583 110.836 1.00 54.07 C
ATOM 12 O2' G A 54 5.913 10.987 112.164 1.00 54.57 O
ATOM 13 C1' G A 54 6.649 11.799 110.045 1.00 40.65 C
ATOM 14 N9 G A 54 5.663 12.531 109.259 1.00 55.64 N
ATOM 15 C8 G A 54 4.581 12.032 108.579 1.00 55.27 C
ATOM 16 N7 G A 54 3.929 12.950 107.913 1.00 51.87 N
ATOM 17 C5 G A 54 4.614 14.125 108.185 1.00 54.57 C
ATOM 18 C6 G A 54 4.384 15.454 107.738 1.00 58.22 C
ATOM 19 O6 G A 54 3.510 15.871 106.983 1.00 63.31 O
ATOM 20 N1 G A 54 5.313 16.339 108.262 1.00 63.82 N
ATOM 21 C2 G A 54 6.338 16.001 109.098 1.00 58.47 C
ATOM 22 N2 G A 54 7.128 17.004 109.487 1.00 52.54 N
ATOM 23 N3 G A 54 6.573 14.768 109.520 1.00 61.53 N
ATOM 24 C4 G A 54 5.676 13.887 109.026 1.00 53.49 C
ATOM 25 P U A 55 8.517 9.539 112.963 1.00 57.14 P
ATOM 26 OP1 U A 55 8.388 11.012 112.849 1.00 81.15 O
ATOM 27 OP2 U A 55 9.820 8.952 113.331 1.00 70.70 O
ATOM 28 O5' U A 55 7.419 8.995 113.974 1.00 68.32 O
TER
ATOM 1 O3' A B 56 2.886 11.020 112.872 1.00 74.54 O
ATOM 2 P U B 57 1.882 9.967 112.191 1.00 62.67 P
ATOM 3 OP1 U B 57 2.707 8.971 111.465 1.00 93.25 O
ATOM 4 OP2 U B 57 0.860 10.742 111.454 1.00 67.21 O
ATOM 5 O5' U B 57 1.201 9.216 113.429 1.00 69.22 O
ATOM 6 C5' U B 57 -0.075 8.582 113.292 1.00 75.00 C
ATOM 7 C4' U B 57 -0.319 7.559 114.401 1.00 73.43 C
ATOM 8 O4' U B 57 0.659 6.486 114.317 1.00 67.93 O
ATOM 9 C3' U B 57 -0.154 8.166 115.795 1.00 60.57 C
ATOM 10 O3' U B 57 -1.180 7.787 116.713 1.00 62.94 O
ATOM 11 C2' U B 57 1.249 7.785 116.255 1.00 55.02 C
ATOM 12 O2' U B 57 1.267 7.431 117.617 1.00 64.75 O
ATOM 13 C1' U B 57 1.488 6.508 115.454 1.00 60.09 C
ATOM 14 N1 U B 57 2.853 6.104 115.107 1.00 65.93 N
ATOM 15 C2 U B 57 3.518 5.346 116.047 1.00 72.28 C
ATOM 16 O2 U B 57 3.015 5.042 117.117 1.00 78.99 O
ATOM 17 N3 U B 57 4.784 4.955 115.694 1.00 68.25 N
ATOM 18 C4 U B 57 5.439 5.244 114.517 1.00 72.28 C
ATOM 19 O4 U B 57 6.586 4.829 114.348 1.00 65.41 O
ATOM 20 C5 U B 57 4.682 6.042 113.592 1.00 70.11 C
ATOM 21 C6 U B 57 3.444 6.437 113.915 1.00 67.10 C
ATOM 22 P A B 58 -2.548 8.620 116.797 1.00 74.08 P
ATOM 23 OP1 A B 58 -3.368 8.017 117.873 1.00 74.12 O
ATOM 24 OP2 A B 58 -3.106 8.733 115.425 1.00 73.57 O
ATOM 25 O5' A B 58 -2.089 10.063 117.279 1.00 67.65 O
TER
Atoms:
OP1: (5.587,6.775,107.309)
OP2: (4.098,8.801,106.767)
C3': (7.312,9.592,110.628)
C1': (6.649,11.799,110.045)
C5': (7.573,9.188,108.198)
O6: (3.510,15.871,106.983)
O4': (7.690,11.407,109.174)
C8: (4.581,12.032,108.579)
C2: (6.338,16.001,109.098)
C6: (4.384,15.454,107.738)
C5: (4.614,14.125,108.185)
C4: (5.676,13.887,109.026)
P: (5.448,8.231,107.041)
C4': (8.029,10.009,109.372)
C2': (6.159,10.583,110.836)
O2': (5.913,10.987,112.164)
N1: (5.313,16.339,108.262)
N2: (7.128,17.004,109.487)
N3: (6.573,14.768,109.520)
N7: (3.929,12.950,107.913)
N9: (5.663,12.531,109.259)
O5': (6.164,9.004,108.233)
O3': (8.082,8.862,111.583)
OP2: (4.098,8.801,106.767)
C3': (7.312,9.592,110.628)
C1': (6.649,11.799,110.045)
C5': (7.573,9.188,108.198)
O6: (3.510,15.871,106.983)
O4': (7.690,11.407,109.174)
C8: (4.581,12.032,108.579)
C2: (6.338,16.001,109.098)
C6: (4.384,15.454,107.738)
C5: (4.614,14.125,108.185)
C4: (5.676,13.887,109.026)
P: (5.448,8.231,107.041)
C4': (8.029,10.009,109.372)
C2': (6.159,10.583,110.836)
O2': (5.913,10.987,112.164)
N1: (5.313,16.339,108.262)
N2: (7.128,17.004,109.487)
N3: (6.573,14.768,109.520)
N7: (3.929,12.950,107.913)
N9: (5.663,12.531,109.259)
O5': (6.164,9.004,108.233)
O3': (8.082,8.862,111.583)
C4: (5.439,5.244,114.517)
N3: (4.784,4.955,115.694)
OP1: (2.707,8.971,111.465)
OP2: (0.860,10.742,111.454)
C2: (3.518,5.346,116.047)
C1': (1.488,6.508,115.454)
C3': (-0.154,8.166,115.795)
O5': (1.201,9.216,113.429)
O4': (0.659,6.486,114.317)
C5': (-0.075,8.582,113.292)
P: (1.882,9.967,112.191)
C4': (-0.319,7.559,114.401)
C2': (1.249,7.785,116.255)
O2': (1.267,7.431,117.617)
N1: (2.853,6.104,115.107)
O4: (6.586,4.829,114.348)
O2: (3.015,5.042,117.117)
C6: (3.444,6.437,113.915)
C5: (4.682,6.042,113.592)
O3': (-1.180,7.787,116.713)
N3: (4.784,4.955,115.694)
OP1: (2.707,8.971,111.465)
OP2: (0.860,10.742,111.454)
C2: (3.518,5.346,116.047)
C1': (1.488,6.508,115.454)
C3': (-0.154,8.166,115.795)
O5': (1.201,9.216,113.429)
O4': (0.659,6.486,114.317)
C5': (-0.075,8.582,113.292)
P: (1.882,9.967,112.191)
C4': (-0.319,7.559,114.401)
C2': (1.249,7.785,116.255)
O2': (1.267,7.431,117.617)
N1: (2.853,6.104,115.107)
O4: (6.586,4.829,114.348)
O2: (3.015,5.042,117.117)
C6: (3.444,6.437,113.915)
C5: (4.682,6.042,113.592)
O3': (-1.180,7.787,116.713)
Image (generated by PyMOL):