Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02518:02520
Extra
PDB:
ATOM 1 O3' A A2517 47.244 136.588 129.770 1.00 40.70 O
ATOM 2 P G A2518 47.878 135.627 130.890 1.00 39.54 P
ATOM 3 OP1 G A2518 48.900 134.779 130.251 1.00 41.36 O
ATOM 4 OP2 G A2518 46.762 134.989 131.633 1.00 39.39 O
ATOM 5 O5' G A2518 48.650 136.633 131.851 1.00 39.68 O
ATOM 6 C5' G A2518 49.785 137.376 131.369 1.00 39.16 C
ATOM 7 C4' G A2518 50.233 138.382 132.401 1.00 40.25 C
ATOM 8 O4' G A2518 49.146 139.313 132.661 1.00 41.41 O
ATOM 9 C3' G A2518 50.558 137.836 133.784 1.00 39.29 C
ATOM 10 O3' G A2518 51.852 137.253 133.859 1.00 38.51 O
ATOM 11 C2' G A2518 50.439 139.089 134.638 1.00 39.34 C
ATOM 12 O2' G A2518 51.548 139.958 134.534 1.00 38.91 O
ATOM 13 C1' G A2518 49.212 139.753 134.008 1.00 40.45 C
ATOM 14 N9 G A2518 48.002 139.333 134.708 1.00 39.26 N
ATOM 15 C8 G A2518 47.193 138.259 134.429 1.00 38.08 C
ATOM 16 N7 G A2518 46.246 138.091 135.312 1.00 39.44 N
ATOM 17 C5 G A2518 46.431 139.129 136.218 1.00 38.98 C
ATOM 18 C6 G A2518 45.724 139.459 137.415 1.00 38.99 C
ATOM 19 O6 G A2518 44.780 138.858 137.952 1.00 37.36 O
ATOM 20 N1 G A2518 46.233 140.612 138.004 1.00 39.25 N
ATOM 21 C2 G A2518 47.292 141.346 137.521 1.00 39.12 C
ATOM 22 N2 G A2518 47.628 142.446 138.212 1.00 38.80 N
ATOM 23 N3 G A2518 47.971 141.032 136.436 1.00 39.13 N
ATOM 24 C4 G A2518 47.489 139.922 135.838 1.00 39.12 C
ATOM 25 P A A2519 52.013 135.656 133.770 1.00 35.82 P
ATOM 26 OP1 A A2519 52.453 135.354 132.384 1.00 39.81 O
ATOM 27 OP2 A A2519 50.778 135.016 134.291 1.00 34.96 O
ATOM 28 O5' A A2519 53.252 135.355 134.730 1.00 37.73 O
TER
ATOM 1 O3' A B2519 52.480 137.898 138.073 1.00 42.67 O
ATOM 2 P A B2520 50.971 137.980 138.590 1.00 44.59 P
ATOM 3 OP1 A B2520 50.708 136.737 139.337 1.00 46.98 O
ATOM 4 OP2 A B2520 50.077 138.360 137.473 1.00 49.72 O
ATOM 5 O5' A B2520 50.992 139.201 139.592 1.00 46.25 O
ATOM 6 C5' A B2520 50.918 140.553 139.113 1.00 44.18 C
ATOM 7 C4' A B2520 52.104 141.309 139.626 1.00 44.84 C
ATOM 8 O4' A B2520 53.179 141.164 138.667 1.00 45.12 O
ATOM 9 C3' A B2520 51.939 142.799 139.888 1.00 43.50 C
ATOM 10 O3' A B2520 52.731 143.128 141.035 1.00 42.71 O
ATOM 11 C2' A B2520 52.522 143.418 138.614 1.00 43.89 C
ATOM 12 O2' A B2520 53.067 144.707 138.810 1.00 43.09 O
ATOM 13 C1' A B2520 53.648 142.437 138.283 1.00 44.34 C
ATOM 14 N9 A B2520 54.040 142.346 136.877 1.00 42.97 N
ATOM 15 C8 A B2520 53.270 142.518 135.753 1.00 44.59 C
ATOM 16 N7 A B2520 53.909 142.284 134.633 1.00 44.40 N
ATOM 17 C5 A B2520 55.190 141.950 135.046 1.00 43.97 C
ATOM 18 C6 A B2520 56.341 141.573 134.337 1.00 44.96 C
ATOM 19 N6 A B2520 56.389 141.468 133.007 1.00 44.77 N
ATOM 20 N1 A B2520 57.458 141.304 135.050 1.00 44.82 N
ATOM 21 C2 A B2520 57.408 141.415 136.384 1.00 44.63 C
ATOM 22 N3 A B2520 56.385 141.757 137.163 1.00 43.97 N
ATOM 23 C4 A B2520 55.291 142.009 136.424 1.00 43.41 C
ATOM 24 P C B2521 52.277 142.640 142.514 1.00 41.87 P
ATOM 25 OP1 C B2521 51.020 141.860 142.432 1.00 40.28 O
ATOM 26 OP2 C B2521 52.344 143.806 143.413 1.00 44.41 O
ATOM 27 O5' C B2521 53.451 141.666 142.979 1.00 40.94 O
TER
ATOM 2 P G A2518 47.878 135.627 130.890 1.00 39.54 P
ATOM 3 OP1 G A2518 48.900 134.779 130.251 1.00 41.36 O
ATOM 4 OP2 G A2518 46.762 134.989 131.633 1.00 39.39 O
ATOM 5 O5' G A2518 48.650 136.633 131.851 1.00 39.68 O
ATOM 6 C5' G A2518 49.785 137.376 131.369 1.00 39.16 C
ATOM 7 C4' G A2518 50.233 138.382 132.401 1.00 40.25 C
ATOM 8 O4' G A2518 49.146 139.313 132.661 1.00 41.41 O
ATOM 9 C3' G A2518 50.558 137.836 133.784 1.00 39.29 C
ATOM 10 O3' G A2518 51.852 137.253 133.859 1.00 38.51 O
ATOM 11 C2' G A2518 50.439 139.089 134.638 1.00 39.34 C
ATOM 12 O2' G A2518 51.548 139.958 134.534 1.00 38.91 O
ATOM 13 C1' G A2518 49.212 139.753 134.008 1.00 40.45 C
ATOM 14 N9 G A2518 48.002 139.333 134.708 1.00 39.26 N
ATOM 15 C8 G A2518 47.193 138.259 134.429 1.00 38.08 C
ATOM 16 N7 G A2518 46.246 138.091 135.312 1.00 39.44 N
ATOM 17 C5 G A2518 46.431 139.129 136.218 1.00 38.98 C
ATOM 18 C6 G A2518 45.724 139.459 137.415 1.00 38.99 C
ATOM 19 O6 G A2518 44.780 138.858 137.952 1.00 37.36 O
ATOM 20 N1 G A2518 46.233 140.612 138.004 1.00 39.25 N
ATOM 21 C2 G A2518 47.292 141.346 137.521 1.00 39.12 C
ATOM 22 N2 G A2518 47.628 142.446 138.212 1.00 38.80 N
ATOM 23 N3 G A2518 47.971 141.032 136.436 1.00 39.13 N
ATOM 24 C4 G A2518 47.489 139.922 135.838 1.00 39.12 C
ATOM 25 P A A2519 52.013 135.656 133.770 1.00 35.82 P
ATOM 26 OP1 A A2519 52.453 135.354 132.384 1.00 39.81 O
ATOM 27 OP2 A A2519 50.778 135.016 134.291 1.00 34.96 O
ATOM 28 O5' A A2519 53.252 135.355 134.730 1.00 37.73 O
TER
ATOM 1 O3' A B2519 52.480 137.898 138.073 1.00 42.67 O
ATOM 2 P A B2520 50.971 137.980 138.590 1.00 44.59 P
ATOM 3 OP1 A B2520 50.708 136.737 139.337 1.00 46.98 O
ATOM 4 OP2 A B2520 50.077 138.360 137.473 1.00 49.72 O
ATOM 5 O5' A B2520 50.992 139.201 139.592 1.00 46.25 O
ATOM 6 C5' A B2520 50.918 140.553 139.113 1.00 44.18 C
ATOM 7 C4' A B2520 52.104 141.309 139.626 1.00 44.84 C
ATOM 8 O4' A B2520 53.179 141.164 138.667 1.00 45.12 O
ATOM 9 C3' A B2520 51.939 142.799 139.888 1.00 43.50 C
ATOM 10 O3' A B2520 52.731 143.128 141.035 1.00 42.71 O
ATOM 11 C2' A B2520 52.522 143.418 138.614 1.00 43.89 C
ATOM 12 O2' A B2520 53.067 144.707 138.810 1.00 43.09 O
ATOM 13 C1' A B2520 53.648 142.437 138.283 1.00 44.34 C
ATOM 14 N9 A B2520 54.040 142.346 136.877 1.00 42.97 N
ATOM 15 C8 A B2520 53.270 142.518 135.753 1.00 44.59 C
ATOM 16 N7 A B2520 53.909 142.284 134.633 1.00 44.40 N
ATOM 17 C5 A B2520 55.190 141.950 135.046 1.00 43.97 C
ATOM 18 C6 A B2520 56.341 141.573 134.337 1.00 44.96 C
ATOM 19 N6 A B2520 56.389 141.468 133.007 1.00 44.77 N
ATOM 20 N1 A B2520 57.458 141.304 135.050 1.00 44.82 N
ATOM 21 C2 A B2520 57.408 141.415 136.384 1.00 44.63 C
ATOM 22 N3 A B2520 56.385 141.757 137.163 1.00 43.97 N
ATOM 23 C4 A B2520 55.291 142.009 136.424 1.00 43.41 C
ATOM 24 P C B2521 52.277 142.640 142.514 1.00 41.87 P
ATOM 25 OP1 C B2521 51.020 141.860 142.432 1.00 40.28 O
ATOM 26 OP2 C B2521 52.344 143.806 143.413 1.00 44.41 O
ATOM 27 O5' C B2521 53.451 141.666 142.979 1.00 40.94 O
TER
Atoms:
OP1: (48.900,134.779,130.251)
OP2: (46.762,134.989,131.633)
C3': (50.558,137.836,133.784)
C1': (49.212,139.753,134.008)
C5': (49.785,137.376,131.369)
O6: (44.780,138.858,137.952)
O4': (49.146,139.313,132.661)
C8: (47.193,138.259,134.429)
C2: (47.292,141.346,137.521)
C6: (45.724,139.459,137.415)
C5: (46.431,139.129,136.218)
C4: (47.489,139.922,135.838)
P: (47.878,135.627,130.890)
C4': (50.233,138.382,132.401)
C2': (50.439,139.089,134.638)
O2': (51.548,139.958,134.534)
N1: (46.233,140.612,138.004)
N2: (47.628,142.446,138.212)
N3: (47.971,141.032,136.436)
N7: (46.246,138.091,135.312)
N9: (48.002,139.333,134.708)
O5': (48.650,136.633,131.851)
O3': (51.852,137.253,133.859)
OP2: (46.762,134.989,131.633)
C3': (50.558,137.836,133.784)
C1': (49.212,139.753,134.008)
C5': (49.785,137.376,131.369)
O6: (44.780,138.858,137.952)
O4': (49.146,139.313,132.661)
C8: (47.193,138.259,134.429)
C2: (47.292,141.346,137.521)
C6: (45.724,139.459,137.415)
C5: (46.431,139.129,136.218)
C4: (47.489,139.922,135.838)
P: (47.878,135.627,130.890)
C4': (50.233,138.382,132.401)
C2': (50.439,139.089,134.638)
O2': (51.548,139.958,134.534)
N1: (46.233,140.612,138.004)
N2: (47.628,142.446,138.212)
N3: (47.971,141.032,136.436)
N7: (46.246,138.091,135.312)
N9: (48.002,139.333,134.708)
O5': (48.650,136.633,131.851)
O3': (51.852,137.253,133.859)
OP1: (50.708,136.737,139.337)
OP2: (50.077,138.360,137.473)
C3': (51.939,142.799,139.888)
C1': (53.648,142.437,138.283)
C5': (50.918,140.553,139.113)
O4': (53.179,141.164,138.667)
C8: (53.270,142.518,135.753)
O2': (53.067,144.707,138.810)
C6: (56.341,141.573,134.337)
C5: (55.190,141.950,135.046)
C4: (55.291,142.009,136.424)
P: (50.971,137.980,138.590)
C4': (52.104,141.309,139.626)
C2': (52.522,143.418,138.614)
C2: (57.408,141.415,136.384)
N1: (57.458,141.304,135.050)
N3: (56.385,141.757,137.163)
N6: (56.389,141.468,133.007)
N7: (53.909,142.284,134.633)
N9: (54.040,142.346,136.877)
O5': (50.992,139.201,139.592)
O3': (52.731,143.128,141.035)
OP2: (50.077,138.360,137.473)
C3': (51.939,142.799,139.888)
C1': (53.648,142.437,138.283)
C5': (50.918,140.553,139.113)
O4': (53.179,141.164,138.667)
C8: (53.270,142.518,135.753)
O2': (53.067,144.707,138.810)
C6: (56.341,141.573,134.337)
C5: (55.190,141.950,135.046)
C4: (55.291,142.009,136.424)
P: (50.971,137.980,138.590)
C4': (52.104,141.309,139.626)
C2': (52.522,143.418,138.614)
C2: (57.408,141.415,136.384)
N1: (57.458,141.304,135.050)
N3: (56.385,141.757,137.163)
N6: (56.389,141.468,133.007)
N7: (53.909,142.284,134.633)
N9: (54.040,142.346,136.877)
O5': (50.992,139.201,139.592)
O3': (52.731,143.128,141.035)
Image (generated by PyMOL):