Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD3:A61:A58
Extra
PDB:
ATOM 1 O3' G A 60 -8.766 13.795 0.276 1.00 24.04 O
ATOM 2 P A A 61 -8.169 12.524 1.059 1.00 25.26 P
ATOM 3 OP1 A A 61 -9.196 12.100 2.037 1.00 26.89 O
ATOM 4 OP2 A A 61 -6.828 12.905 1.557 1.00 23.17 O
ATOM 5 O5' A A 61 -8.029 11.429 -0.088 1.00 26.11 O
ATOM 6 C5' A A 61 -9.160 11.000 -0.835 1.00 26.84 C
ATOM 7 C4' A A 61 -8.756 10.077 -1.958 1.00 26.74 C
ATOM 8 O4' A A 61 -8.172 10.845 -3.039 1.00 27.69 O
ATOM 9 C3' A A 61 -7.693 9.049 -1.613 1.00 27.80 C
ATOM 10 O3' A A 61 -8.229 7.903 -0.987 1.00 27.70 O
ATOM 11 C2' A A 61 -7.045 8.759 -2.958 1.00 28.45 C
ATOM 12 O2' A A 61 -7.839 7.856 -3.710 1.00 30.54 O
ATOM 13 C1' A A 61 -7.109 10.130 -3.625 1.00 28.20 C
ATOM 14 N9 A A 61 -5.868 10.897 -3.425 1.00 28.81 N
ATOM 15 C8 A A 61 -5.484 11.589 -2.304 1.00 26.00 C
ATOM 16 N7 A A 61 -4.324 12.187 -2.429 1.00 24.28 N
ATOM 17 C5 A A 61 -3.918 11.862 -3.715 1.00 25.04 C
ATOM 18 C6 A A 61 -2.764 12.183 -4.449 1.00 26.07 C
ATOM 19 N6 A A 61 -1.773 12.936 -3.963 1.00 23.86 N
ATOM 20 N1 A A 61 -2.669 11.700 -5.709 1.00 27.43 N
ATOM 21 C2 A A 61 -3.668 10.942 -6.183 1.00 28.26 C
ATOM 22 N3 A A 61 -4.800 10.565 -5.586 1.00 26.78 N
ATOM 23 C4 A A 61 -4.862 11.069 -4.342 1.00 26.83 C
ATOM 24 P G A 62 -7.352 7.093 0.078 1.00 33.22 P
ATOM 25 OP1 G A 62 -8.093 5.844 0.396 1.00 34.80 O
ATOM 26 OP2 G A 62 -7.026 8.032 1.183 1.00 28.63 O
ATOM 27 O5' G A 62 -6.041 6.750 -0.746 1.00 26.15 O
TER
ATOM 1 O3' C B 57 2.361 20.515 4.160 1.00 21.35 O
ATOM 2 P G B 58 1.158 21.407 3.575 1.00 22.93 P
ATOM 3 OP1 G B 58 1.777 22.564 2.895 1.00 25.11 O
ATOM 4 OP2 G B 58 0.205 21.656 4.684 1.00 22.61 O
ATOM 5 O5' G B 58 0.500 20.439 2.502 1.00 31.30 O
ATOM 6 C5' G B 58 1.230 20.025 1.360 1.00 29.13 C
ATOM 7 C4' G B 58 0.434 19.068 0.516 1.00 27.45 C
ATOM 8 O4' G B 58 0.278 17.805 1.209 1.00 24.63 O
ATOM 9 C3' G B 58 -0.990 19.483 0.198 1.00 25.52 C
ATOM 10 O3' G B 58 -1.065 20.447 -0.839 1.00 25.10 O
ATOM 11 C2' G B 58 -1.647 18.152 -0.150 1.00 25.67 C
ATOM 12 O2' G B 58 -1.324 17.758 -1.476 1.00 26.91 O
ATOM 13 C1' G B 58 -0.941 17.202 0.825 1.00 25.97 C
ATOM 14 N9 G B 58 -1.758 16.956 2.026 1.00 24.77 N
ATOM 15 C8 G B 58 -1.754 17.586 3.248 1.00 25.12 C
ATOM 16 N7 G B 58 -2.659 17.105 4.062 1.00 26.94 N
ATOM 17 C5 G B 58 -3.301 16.113 3.328 1.00 25.27 C
ATOM 18 C6 G B 58 -4.371 15.244 3.661 1.00 26.25 C
ATOM 19 O6 G B 58 -4.998 15.160 4.723 1.00 28.12 O
ATOM 20 N1 G B 58 -4.697 14.403 2.600 1.00 24.08 N
ATOM 21 C2 G B 58 -4.076 14.396 1.374 1.00 23.57 C
ATOM 22 N2 G B 58 -4.532 13.513 0.475 1.00 21.81 N
ATOM 23 N3 G B 58 -3.082 15.205 1.050 1.00 22.35 N
ATOM 24 C4 G B 58 -2.755 16.020 2.069 1.00 23.77 C
ATOM 25 P A B 59 -2.014 21.731 -0.680 1.00 30.62 P
ATOM 26 OP1 A B 59 -2.064 22.402 -1.999 1.00 34.74 O
ATOM 27 OP2 A B 59 -1.526 22.501 0.492 1.00 30.72 O
ATOM 28 O5' A B 59 -3.431 21.084 -0.348 1.00 24.66 O
TER
ATOM 2 P A A 61 -8.169 12.524 1.059 1.00 25.26 P
ATOM 3 OP1 A A 61 -9.196 12.100 2.037 1.00 26.89 O
ATOM 4 OP2 A A 61 -6.828 12.905 1.557 1.00 23.17 O
ATOM 5 O5' A A 61 -8.029 11.429 -0.088 1.00 26.11 O
ATOM 6 C5' A A 61 -9.160 11.000 -0.835 1.00 26.84 C
ATOM 7 C4' A A 61 -8.756 10.077 -1.958 1.00 26.74 C
ATOM 8 O4' A A 61 -8.172 10.845 -3.039 1.00 27.69 O
ATOM 9 C3' A A 61 -7.693 9.049 -1.613 1.00 27.80 C
ATOM 10 O3' A A 61 -8.229 7.903 -0.987 1.00 27.70 O
ATOM 11 C2' A A 61 -7.045 8.759 -2.958 1.00 28.45 C
ATOM 12 O2' A A 61 -7.839 7.856 -3.710 1.00 30.54 O
ATOM 13 C1' A A 61 -7.109 10.130 -3.625 1.00 28.20 C
ATOM 14 N9 A A 61 -5.868 10.897 -3.425 1.00 28.81 N
ATOM 15 C8 A A 61 -5.484 11.589 -2.304 1.00 26.00 C
ATOM 16 N7 A A 61 -4.324 12.187 -2.429 1.00 24.28 N
ATOM 17 C5 A A 61 -3.918 11.862 -3.715 1.00 25.04 C
ATOM 18 C6 A A 61 -2.764 12.183 -4.449 1.00 26.07 C
ATOM 19 N6 A A 61 -1.773 12.936 -3.963 1.00 23.86 N
ATOM 20 N1 A A 61 -2.669 11.700 -5.709 1.00 27.43 N
ATOM 21 C2 A A 61 -3.668 10.942 -6.183 1.00 28.26 C
ATOM 22 N3 A A 61 -4.800 10.565 -5.586 1.00 26.78 N
ATOM 23 C4 A A 61 -4.862 11.069 -4.342 1.00 26.83 C
ATOM 24 P G A 62 -7.352 7.093 0.078 1.00 33.22 P
ATOM 25 OP1 G A 62 -8.093 5.844 0.396 1.00 34.80 O
ATOM 26 OP2 G A 62 -7.026 8.032 1.183 1.00 28.63 O
ATOM 27 O5' G A 62 -6.041 6.750 -0.746 1.00 26.15 O
TER
ATOM 1 O3' C B 57 2.361 20.515 4.160 1.00 21.35 O
ATOM 2 P G B 58 1.158 21.407 3.575 1.00 22.93 P
ATOM 3 OP1 G B 58 1.777 22.564 2.895 1.00 25.11 O
ATOM 4 OP2 G B 58 0.205 21.656 4.684 1.00 22.61 O
ATOM 5 O5' G B 58 0.500 20.439 2.502 1.00 31.30 O
ATOM 6 C5' G B 58 1.230 20.025 1.360 1.00 29.13 C
ATOM 7 C4' G B 58 0.434 19.068 0.516 1.00 27.45 C
ATOM 8 O4' G B 58 0.278 17.805 1.209 1.00 24.63 O
ATOM 9 C3' G B 58 -0.990 19.483 0.198 1.00 25.52 C
ATOM 10 O3' G B 58 -1.065 20.447 -0.839 1.00 25.10 O
ATOM 11 C2' G B 58 -1.647 18.152 -0.150 1.00 25.67 C
ATOM 12 O2' G B 58 -1.324 17.758 -1.476 1.00 26.91 O
ATOM 13 C1' G B 58 -0.941 17.202 0.825 1.00 25.97 C
ATOM 14 N9 G B 58 -1.758 16.956 2.026 1.00 24.77 N
ATOM 15 C8 G B 58 -1.754 17.586 3.248 1.00 25.12 C
ATOM 16 N7 G B 58 -2.659 17.105 4.062 1.00 26.94 N
ATOM 17 C5 G B 58 -3.301 16.113 3.328 1.00 25.27 C
ATOM 18 C6 G B 58 -4.371 15.244 3.661 1.00 26.25 C
ATOM 19 O6 G B 58 -4.998 15.160 4.723 1.00 28.12 O
ATOM 20 N1 G B 58 -4.697 14.403 2.600 1.00 24.08 N
ATOM 21 C2 G B 58 -4.076 14.396 1.374 1.00 23.57 C
ATOM 22 N2 G B 58 -4.532 13.513 0.475 1.00 21.81 N
ATOM 23 N3 G B 58 -3.082 15.205 1.050 1.00 22.35 N
ATOM 24 C4 G B 58 -2.755 16.020 2.069 1.00 23.77 C
ATOM 25 P A B 59 -2.014 21.731 -0.680 1.00 30.62 P
ATOM 26 OP1 A B 59 -2.064 22.402 -1.999 1.00 34.74 O
ATOM 27 OP2 A B 59 -1.526 22.501 0.492 1.00 30.72 O
ATOM 28 O5' A B 59 -3.431 21.084 -0.348 1.00 24.66 O
TER
Atoms:
OP1: (-9.196,12.100,2.037)
OP2: (-6.828,12.905,1.557)
C3': (-7.693,9.049,-1.613)
C1': (-7.109,10.130,-3.625)
C5': (-9.160,11.000,-0.835)
O4': (-8.172,10.845,-3.039)
C8: (-5.484,11.589,-2.304)
O2': (-7.839,7.856,-3.710)
C6: (-2.764,12.183,-4.449)
C5: (-3.918,11.862,-3.715)
C4: (-4.862,11.069,-4.342)
P: (-8.169,12.524,1.059)
C4': (-8.756,10.077,-1.958)
C2': (-7.045,8.759,-2.958)
C2: (-3.668,10.942,-6.183)
N1: (-2.669,11.700,-5.709)
N3: (-4.800,10.565,-5.586)
N6: (-1.773,12.936,-3.963)
N7: (-4.324,12.187,-2.429)
N9: (-5.868,10.897,-3.425)
O5': (-8.029,11.429,-0.088)
O3': (-8.229,7.903,-0.987)
OP2: (-6.828,12.905,1.557)
C3': (-7.693,9.049,-1.613)
C1': (-7.109,10.130,-3.625)
C5': (-9.160,11.000,-0.835)
O4': (-8.172,10.845,-3.039)
C8: (-5.484,11.589,-2.304)
O2': (-7.839,7.856,-3.710)
C6: (-2.764,12.183,-4.449)
C5: (-3.918,11.862,-3.715)
C4: (-4.862,11.069,-4.342)
P: (-8.169,12.524,1.059)
C4': (-8.756,10.077,-1.958)
C2': (-7.045,8.759,-2.958)
C2: (-3.668,10.942,-6.183)
N1: (-2.669,11.700,-5.709)
N3: (-4.800,10.565,-5.586)
N6: (-1.773,12.936,-3.963)
N7: (-4.324,12.187,-2.429)
N9: (-5.868,10.897,-3.425)
O5': (-8.029,11.429,-0.088)
O3': (-8.229,7.903,-0.987)
OP1: (1.777,22.564,2.895)
OP2: (0.205,21.656,4.684)
C3': (-0.990,19.483,0.198)
C1': (-0.941,17.202,0.825)
C5': (1.230,20.025,1.360)
O6: (-4.998,15.160,4.723)
O4': (0.278,17.805,1.209)
C8: (-1.754,17.586,3.248)
C2: (-4.076,14.396,1.374)
C6: (-4.371,15.244,3.661)
C5: (-3.301,16.113,3.328)
C4: (-2.755,16.020,2.069)
P: (1.158,21.407,3.575)
C4': (0.434,19.068,0.516)
C2': (-1.647,18.152,-0.150)
O2': (-1.324,17.758,-1.476)
N1: (-4.697,14.403,2.600)
N2: (-4.532,13.513,0.475)
N3: (-3.082,15.205,1.050)
N7: (-2.659,17.105,4.062)
N9: (-1.758,16.956,2.026)
O5': (0.500,20.439,2.502)
O3': (-1.065,20.447,-0.839)
OP2: (0.205,21.656,4.684)
C3': (-0.990,19.483,0.198)
C1': (-0.941,17.202,0.825)
C5': (1.230,20.025,1.360)
O6: (-4.998,15.160,4.723)
O4': (0.278,17.805,1.209)
C8: (-1.754,17.586,3.248)
C2: (-4.076,14.396,1.374)
C6: (-4.371,15.244,3.661)
C5: (-3.301,16.113,3.328)
C4: (-2.755,16.020,2.069)
P: (1.158,21.407,3.575)
C4': (0.434,19.068,0.516)
C2': (-1.647,18.152,-0.150)
O2': (-1.324,17.758,-1.476)
N1: (-4.697,14.403,2.600)
N2: (-4.532,13.513,0.475)
N3: (-3.082,15.205,1.050)
N7: (-2.659,17.105,4.062)
N9: (-1.758,16.956,2.026)
O5': (0.500,20.439,2.502)
O3': (-1.065,20.447,-0.839)
Image (generated by PyMOL):