ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1NYI:B13:B10

Extra

PDB:
ATOM 1 O3' A A 12 32.540 -9.093 8.491 1.00 42.60 O
ATOM 2 P A A 13 32.196 -9.440 10.003 1.00 42.72 P
ATOM 3 OP1 A A 13 31.047 -10.369 9.951 1.00 43.52 O
ATOM 4 OP2 A A 13 32.231 -8.164 10.753 1.00 42.99 O
ATOM 5 O5' A A 13 33.378 -10.356 10.506 1.00 41.90 O
ATOM 6 C5' A A 13 33.346 -11.694 10.052 1.00 41.31 C
ATOM 7 C4' A A 13 34.608 -12.355 10.534 1.00 41.05 C
ATOM 8 O4' A A 13 35.723 -11.610 10.011 1.00 41.59 O
ATOM 9 C3' A A 13 34.783 -12.234 12.028 1.00 39.66 C
ATOM 10 O3' A A 13 34.007 -13.253 12.623 1.00 37.70 O
ATOM 11 C2' A A 13 36.287 -12.404 12.156 1.00 40.41 C
ATOM 12 O2' A A 13 36.688 -13.754 12.032 1.00 41.66 O
ATOM 13 C1' A A 13 36.791 -11.657 10.930 1.00 40.56 C
ATOM 14 N9 A A 13 37.249 -10.289 11.137 1.00 39.80 N
ATOM 15 C8 A A 13 36.512 -9.211 11.499 1.00 40.90 C
ATOM 16 N7 A A 13 37.206 -8.095 11.571 1.00 41.57 N
ATOM 17 C5 A A 13 38.495 -8.465 11.232 1.00 39.33 C
ATOM 18 C6 A A 13 39.717 -7.760 11.122 1.00 38.22 C
ATOM 19 N6 A A 13 39.908 -6.467 11.353 1.00 37.08 N
ATOM 20 N1 A A 13 40.798 -8.438 10.750 1.00 38.70 N
ATOM 21 C2 A A 13 40.669 -9.742 10.498 1.00 39.96 C
ATOM 22 N3 A A 13 39.592 -10.520 10.571 1.00 40.26 N
ATOM 23 C4 A A 13 38.522 -9.813 10.951 1.00 39.64 C
ATOM 24 P G A 14 33.294 -13.017 14.040 1.00 37.20 P
ATOM 25 OP1 G A 14 32.650 -14.313 14.362 1.00 37.11 O
ATOM 26 OP2 G A 14 32.523 -11.752 14.036 1.00 37.51 O
ATOM 27 O5' G A 14 34.510 -12.793 15.048 1.00 35.93 O
TER

ATOM 1 O3' C B 9 36.631 3.472 11.913 1.00 42.44 O
ATOM 2 P G B 10 36.266 3.418 10.356 1.00 42.64 P
ATOM 3 OP1 G B 10 37.298 4.192 9.637 1.00 42.23 O
ATOM 4 OP2 G B 10 34.826 3.728 10.207 1.00 41.59 O
ATOM 5 O5' G B 10 36.503 1.878 10.059 1.00 41.59 O
ATOM 6 C5' G B 10 37.821 1.409 10.187 1.00 40.64 C
ATOM 7 C4' G B 10 37.780 -0.096 10.285 1.00 41.10 C
ATOM 8 O4' G B 10 37.056 -0.587 11.447 1.00 41.16 O
ATOM 9 C3' G B 10 37.079 -0.793 9.142 1.00 40.76 C
ATOM 10 O3' G B 10 37.905 -0.635 8.030 1.00 42.78 O
ATOM 11 C2' G B 10 37.161 -2.192 9.736 1.00 40.22 C
ATOM 12 O2' G B 10 38.469 -2.758 9.599 1.00 39.65 O
ATOM 13 C1' G B 10 36.709 -1.936 11.195 1.00 39.37 C
ATOM 14 N9 G B 10 35.255 -2.120 11.243 1.00 37.67 N
ATOM 15 C8 G B 10 34.277 -1.149 11.140 1.00 36.86 C
ATOM 16 N7 G B 10 33.063 -1.626 11.160 1.00 35.94 N
ATOM 17 C5 G B 10 33.251 -3.002 11.278 1.00 36.19 C
ATOM 18 C6 G B 10 32.306 -4.052 11.343 1.00 36.27 C
ATOM 19 O6 G B 10 31.076 -3.926 11.314 1.00 37.61 O
ATOM 20 N1 G B 10 32.886 -5.320 11.463 1.00 35.33 N
ATOM 21 C2 G B 10 34.250 -5.544 11.517 1.00 36.78 C
ATOM 22 N2 G B 10 34.693 -6.822 11.631 1.00 35.20 N
ATOM 23 N3 G B 10 35.140 -4.553 11.459 1.00 37.15 N
ATOM 24 C4 G B 10 34.583 -3.321 11.327 1.00 36.41 C
ATOM 25 P U B 11 37.424 -0.237 6.561 1.00 44.49 P
ATOM 26 OP1 U B 11 38.625 -0.557 5.749 1.00 45.29 O
ATOM 27 OP2 U B 11 36.829 1.124 6.569 1.00 43.36 O
ATOM 28 O5' U B 11 36.291 -1.309 6.183 1.00 44.47 O
TER

Atoms:
OP1: (31.047,-10.369,9.951)
OP2: (32.231,-8.164,10.753)
C3': (34.783,-12.234,12.028)
C1': (36.791,-11.657,10.930)
C5': (33.346,-11.694,10.052)
O4': (35.723,-11.610,10.011)
C8: (36.512,-9.211,11.499)
O2': (36.688,-13.754,12.032)
C6: (39.717,-7.760,11.122)
C5: (38.495,-8.465,11.232)
C4: (38.522,-9.813,10.951)
P: (32.196,-9.440,10.003)
C4': (34.608,-12.355,10.534)
C2': (36.287,-12.404,12.156)
C2: (40.669,-9.742,10.498)
N1: (40.798,-8.438,10.750)
N3: (39.592,-10.520,10.571)
N6: (39.908,-6.467,11.353)
N7: (37.206,-8.095,11.571)
N9: (37.249,-10.289,11.137)
O5': (33.378,-10.356,10.506)
O3': (34.007,-13.253,12.623)
OP1: (37.298,4.192,9.637)
OP2: (34.826,3.728,10.207)
C3': (37.079,-0.793,9.142)
C1': (36.709,-1.936,11.195)
C5': (37.821,1.409,10.187)
O6: (31.076,-3.926,11.314)
O4': (37.056,-0.587,11.447)
C8: (34.277,-1.149,11.140)
C2: (34.250,-5.544,11.517)
C6: (32.306,-4.052,11.343)
C5: (33.251,-3.002,11.278)
C4: (34.583,-3.321,11.327)
P: (36.266,3.418,10.356)
C4': (37.780,-0.096,10.285)
C2': (37.161,-2.192,9.736)
O2': (38.469,-2.758,9.599)
N1: (32.886,-5.320,11.463)
N2: (34.693,-6.822,11.631)
N3: (35.140,-4.553,11.459)
N7: (33.063,-1.626,11.160)
N9: (35.255,-2.120,11.243)
O5': (36.503,1.878,10.059)
O3': (37.905,-0.635,8.030)
Image (generated by PyMOL):
PyMOL image
show in jmol