ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:01289:01286

Extra

PDB:
ATOM 1 O3' G A1288 21.145 114.458 76.951 1.00 37.41 O
ATOM 2 P A A1289 21.094 115.794 76.061 1.00 36.73 P
ATOM 3 OP1 A A1289 21.803 116.853 76.822 1.00 35.59 O
ATOM 4 OP2 A A1289 19.690 116.009 75.666 1.00 37.69 O
ATOM 5 O5' A A1289 21.934 115.425 74.758 1.00 34.24 O
ATOM 6 C5' A A1289 23.366 115.487 74.770 1.00 33.04 C
ATOM 7 C4' A A1289 23.928 114.767 73.578 1.00 32.85 C
ATOM 8 O4' A A1289 23.358 113.441 73.556 1.00 33.73 O
ATOM 9 C3' A A1289 23.586 115.319 72.204 1.00 32.69 C
ATOM 10 O3' A A1289 24.488 116.328 71.804 1.00 31.34 O
ATOM 11 C2' A A1289 23.807 114.102 71.324 1.00 35.14 C
ATOM 12 O2' A A1289 25.176 113.839 71.095 1.00 37.87 O
ATOM 13 C1' A A1289 23.270 112.990 72.217 1.00 35.07 C
ATOM 14 N9 A A1289 21.883 112.652 71.924 1.00 35.25 N
ATOM 15 C8 A A1289 20.753 113.374 72.192 1.00 34.95 C
ATOM 16 N7 A A1289 19.651 112.786 71.803 1.00 37.03 N
ATOM 17 C5 A A1289 20.087 111.595 71.236 1.00 37.83 C
ATOM 18 C6 A A1289 19.401 110.514 70.633 1.00 38.83 C
ATOM 19 N6 A A1289 18.074 110.465 70.477 1.00 39.43 N
ATOM 20 N1 A A1289 20.139 109.475 70.185 1.00 38.85 N
ATOM 21 C2 A A1289 21.469 109.529 70.323 1.00 38.80 C
ATOM 22 N3 A A1289 22.223 110.487 70.859 1.00 39.07 N
ATOM 23 C4 A A1289 21.460 111.502 71.304 1.00 37.25 C
ATOM 24 P G A1290 24.108 117.866 72.003 1.00 36.25 P
ATOM 25 OP1 G A1290 25.210 118.646 71.395 1.00 36.67 O
ATOM 26 OP2 G A1290 23.781 118.063 73.422 1.00 37.56 O
ATOM 27 O5' G A1290 22.759 118.097 71.181 1.00 36.80 O
TER

ATOM 1 O3' C B1285 7.771 113.530 75.515 1.00 37.87 O
ATOM 2 P G B1286 8.427 112.521 76.574 1.00 39.95 P
ATOM 3 OP1 G B1286 7.627 111.264 76.521 1.00 37.14 O
ATOM 4 OP2 G B1286 8.613 113.228 77.861 1.00 38.63 O
ATOM 5 O5' G B1286 9.870 112.217 75.982 1.00 40.44 O
ATOM 6 C5' G B1286 10.018 111.332 74.866 1.00 42.47 C
ATOM 7 C4' G B1286 11.465 111.225 74.450 1.00 42.18 C
ATOM 8 O4' G B1286 11.946 112.510 73.980 1.00 42.18 O
ATOM 9 C3' G B1286 12.477 110.853 75.517 1.00 41.08 C
ATOM 10 O3' G B1286 12.466 109.466 75.800 1.00 41.22 O
ATOM 11 C2' G B1286 13.778 111.268 74.851 1.00 40.41 C
ATOM 12 O2' G B1286 14.199 110.311 73.900 1.00 40.87 O
ATOM 13 C1' G B1286 13.352 112.566 74.151 1.00 40.03 C
ATOM 14 N9 G B1286 13.676 113.725 74.966 1.00 36.83 N
ATOM 15 C8 G B1286 12.861 114.390 75.847 1.00 37.00 C
ATOM 16 N7 G B1286 13.481 115.331 76.503 1.00 37.68 N
ATOM 17 C5 G B1286 14.779 115.291 76.009 1.00 36.83 C
ATOM 18 C6 G B1286 15.924 116.053 76.355 1.00 35.11 C
ATOM 19 O6 G B1286 16.038 116.935 77.210 1.00 35.34 O
ATOM 20 N1 G B1286 17.022 115.692 75.592 1.00 34.31 N
ATOM 21 C2 G B1286 17.027 114.724 74.624 1.00 35.31 C
ATOM 22 N2 G B1286 18.181 114.539 73.978 1.00 36.64 N
ATOM 23 N3 G B1286 15.979 113.994 74.308 1.00 36.16 N
ATOM 24 C4 G B1286 14.898 114.327 75.036 1.00 36.71 C
ATOM 25 P A B1287 12.385 108.975 77.325 1.00 42.15 P
ATOM 26 OP1 A B1287 12.483 107.496 77.323 1.00 39.51 O
ATOM 27 OP2 A B1287 11.212 109.634 77.947 1.00 40.98 O
ATOM 28 O5' A B1287 13.691 109.596 77.992 1.00 41.08 O
TER

Atoms:
OP1: (21.803,116.853,76.822)
OP2: (19.690,116.009,75.666)
C3': (23.586,115.319,72.204)
C1': (23.270,112.990,72.217)
C5': (23.366,115.487,74.770)
O4': (23.358,113.441,73.556)
C8: (20.753,113.374,72.192)
O2': (25.176,113.839,71.095)
C6: (19.401,110.514,70.633)
C5: (20.087,111.595,71.236)
C4: (21.460,111.502,71.304)
P: (21.094,115.794,76.061)
C4': (23.928,114.767,73.578)
C2': (23.807,114.102,71.324)
C2: (21.469,109.529,70.323)
N1: (20.139,109.475,70.185)
N3: (22.223,110.487,70.859)
N6: (18.074,110.465,70.477)
N7: (19.651,112.786,71.803)
N9: (21.883,112.652,71.924)
O5': (21.934,115.425,74.758)
O3': (24.488,116.328,71.804)
OP1: (7.627,111.264,76.521)
OP2: (8.613,113.228,77.861)
C3': (12.477,110.853,75.517)
C1': (13.352,112.566,74.151)
C5': (10.018,111.332,74.866)
O6: (16.038,116.935,77.210)
O4': (11.946,112.510,73.980)
C8: (12.861,114.390,75.847)
C2: (17.027,114.724,74.624)
C6: (15.924,116.053,76.355)
C5: (14.779,115.291,76.009)
C4: (14.898,114.327,75.036)
P: (8.427,112.521,76.574)
C4': (11.465,111.225,74.450)
C2': (13.778,111.268,74.851)
O2': (14.199,110.311,73.900)
N1: (17.022,115.692,75.592)
N2: (18.181,114.539,73.978)
N3: (15.979,113.994,74.308)
N7: (13.481,115.331,76.503)
N9: (13.676,113.725,74.966)
O5': (9.870,112.217,75.982)
O3': (12.466,109.466,75.800)
Image (generated by PyMOL):
PyMOL image
show in jmol