Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0880:0881
Extra
PDB:
ATOM 1 O3' G A 879 65.250 117.729 54.827 1.00 28.90 O
ATOM 2 P C A 880 64.042 116.943 55.536 1.00 29.28 P
ATOM 3 OP1 C A 880 64.624 115.955 56.475 1.00 29.86 O
ATOM 4 OP2 C A 880 63.157 116.493 54.437 1.00 30.11 O
ATOM 5 O5' C A 880 63.269 118.042 56.383 1.00 27.34 O
ATOM 6 C5' C A 880 61.902 117.856 56.753 1.00 26.44 C
ATOM 7 C4' C A 880 61.533 118.812 57.862 1.00 28.32 C
ATOM 8 O4' C A 880 62.210 118.424 59.088 1.00 27.18 O
ATOM 9 C3' C A 880 61.891 120.273 57.623 1.00 27.67 C
ATOM 10 O3' C A 880 60.939 121.092 58.295 1.00 29.78 O
ATOM 11 C2' C A 880 63.246 120.390 58.323 1.00 28.63 C
ATOM 12 O2' C A 880 63.532 121.701 58.772 1.00 29.96 O
ATOM 13 C1' C A 880 63.040 119.476 59.530 1.00 27.40 C
ATOM 14 N1 C A 880 64.267 118.886 60.105 1.00 26.76 N
ATOM 15 C2 C A 880 64.792 119.434 61.275 1.00 28.36 C
ATOM 16 O2 C A 880 64.270 120.455 61.750 1.00 32.84 O
ATOM 17 N3 C A 880 65.860 118.849 61.860 1.00 28.18 N
ATOM 18 C4 C A 880 66.413 117.770 61.307 1.00 28.51 C
ATOM 19 N4 C A 880 67.447 117.207 61.937 1.00 28.08 N
ATOM 20 C5 C A 880 65.929 117.218 60.090 1.00 27.67 C
ATOM 21 C6 C A 880 64.865 117.802 59.527 1.00 27.06 C
ATOM 22 P A A 881 59.405 121.107 57.815 1.00 28.82 P
ATOM 23 OP1 A A 881 59.297 120.415 56.510 1.00 28.08 O
ATOM 24 OP2 A A 881 58.924 122.501 57.952 1.00 28.21 O
ATOM 25 O5' A A 881 58.664 120.219 58.903 1.00 26.61 O
TER
ATOM 1 O3' C B 880 60.939 121.092 58.295 1.00 29.78 O
ATOM 2 P A B 881 59.405 121.107 57.815 1.00 28.82 P
ATOM 3 OP1 A B 881 59.297 120.415 56.510 1.00 28.08 O
ATOM 4 OP2 A B 881 58.924 122.501 57.952 1.00 28.21 O
ATOM 5 O5' A B 881 58.664 120.219 58.903 1.00 26.61 O
ATOM 6 C5' A B 881 58.629 120.619 60.288 1.00 26.29 C
ATOM 7 C4' A B 881 58.267 119.438 61.162 1.00 25.90 C
ATOM 8 O4' A B 881 56.891 119.044 60.903 1.00 26.63 O
ATOM 9 C3' A B 881 59.113 118.193 60.935 1.00 24.06 C
ATOM 10 O3' A B 881 59.211 117.475 62.147 1.00 23.70 O
ATOM 11 C2' A B 881 58.292 117.420 59.911 1.00 25.18 C
ATOM 12 O2' A B 881 58.535 116.032 59.933 1.00 22.93 O
ATOM 13 C1' A B 881 56.861 117.743 60.346 1.00 26.75 C
ATOM 14 N9 A B 881 55.921 117.775 59.226 1.00 30.62 N
ATOM 15 C8 A B 881 56.111 118.365 58.002 1.00 31.77 C
ATOM 16 N7 A B 881 55.088 118.250 57.195 1.00 35.18 N
ATOM 17 C5 A B 881 54.159 117.531 57.933 1.00 33.88 C
ATOM 18 C6 A B 881 52.867 117.077 57.636 1.00 33.67 C
ATOM 19 N6 A B 881 52.261 117.279 56.461 1.00 31.15 N
ATOM 20 N1 A B 881 52.210 116.392 58.594 1.00 34.46 N
ATOM 21 C2 A B 881 52.822 116.172 59.760 1.00 32.71 C
ATOM 22 N3 A B 881 54.031 116.540 60.156 1.00 34.04 N
ATOM 23 C4 A B 881 54.659 117.228 59.185 1.00 33.49 C
ATOM 24 P A B 882 60.463 117.719 63.117 1.00 27.76 P
ATOM 25 OP1 A B 882 59.937 117.693 64.512 1.00 27.40 O
ATOM 26 OP2 A B 882 61.213 118.908 62.644 1.00 28.22 O
ATOM 27 O5' A B 882 61.375 116.429 62.940 1.00 23.53 O
TER
ATOM 2 P C A 880 64.042 116.943 55.536 1.00 29.28 P
ATOM 3 OP1 C A 880 64.624 115.955 56.475 1.00 29.86 O
ATOM 4 OP2 C A 880 63.157 116.493 54.437 1.00 30.11 O
ATOM 5 O5' C A 880 63.269 118.042 56.383 1.00 27.34 O
ATOM 6 C5' C A 880 61.902 117.856 56.753 1.00 26.44 C
ATOM 7 C4' C A 880 61.533 118.812 57.862 1.00 28.32 C
ATOM 8 O4' C A 880 62.210 118.424 59.088 1.00 27.18 O
ATOM 9 C3' C A 880 61.891 120.273 57.623 1.00 27.67 C
ATOM 10 O3' C A 880 60.939 121.092 58.295 1.00 29.78 O
ATOM 11 C2' C A 880 63.246 120.390 58.323 1.00 28.63 C
ATOM 12 O2' C A 880 63.532 121.701 58.772 1.00 29.96 O
ATOM 13 C1' C A 880 63.040 119.476 59.530 1.00 27.40 C
ATOM 14 N1 C A 880 64.267 118.886 60.105 1.00 26.76 N
ATOM 15 C2 C A 880 64.792 119.434 61.275 1.00 28.36 C
ATOM 16 O2 C A 880 64.270 120.455 61.750 1.00 32.84 O
ATOM 17 N3 C A 880 65.860 118.849 61.860 1.00 28.18 N
ATOM 18 C4 C A 880 66.413 117.770 61.307 1.00 28.51 C
ATOM 19 N4 C A 880 67.447 117.207 61.937 1.00 28.08 N
ATOM 20 C5 C A 880 65.929 117.218 60.090 1.00 27.67 C
ATOM 21 C6 C A 880 64.865 117.802 59.527 1.00 27.06 C
ATOM 22 P A A 881 59.405 121.107 57.815 1.00 28.82 P
ATOM 23 OP1 A A 881 59.297 120.415 56.510 1.00 28.08 O
ATOM 24 OP2 A A 881 58.924 122.501 57.952 1.00 28.21 O
ATOM 25 O5' A A 881 58.664 120.219 58.903 1.00 26.61 O
TER
ATOM 1 O3' C B 880 60.939 121.092 58.295 1.00 29.78 O
ATOM 2 P A B 881 59.405 121.107 57.815 1.00 28.82 P
ATOM 3 OP1 A B 881 59.297 120.415 56.510 1.00 28.08 O
ATOM 4 OP2 A B 881 58.924 122.501 57.952 1.00 28.21 O
ATOM 5 O5' A B 881 58.664 120.219 58.903 1.00 26.61 O
ATOM 6 C5' A B 881 58.629 120.619 60.288 1.00 26.29 C
ATOM 7 C4' A B 881 58.267 119.438 61.162 1.00 25.90 C
ATOM 8 O4' A B 881 56.891 119.044 60.903 1.00 26.63 O
ATOM 9 C3' A B 881 59.113 118.193 60.935 1.00 24.06 C
ATOM 10 O3' A B 881 59.211 117.475 62.147 1.00 23.70 O
ATOM 11 C2' A B 881 58.292 117.420 59.911 1.00 25.18 C
ATOM 12 O2' A B 881 58.535 116.032 59.933 1.00 22.93 O
ATOM 13 C1' A B 881 56.861 117.743 60.346 1.00 26.75 C
ATOM 14 N9 A B 881 55.921 117.775 59.226 1.00 30.62 N
ATOM 15 C8 A B 881 56.111 118.365 58.002 1.00 31.77 C
ATOM 16 N7 A B 881 55.088 118.250 57.195 1.00 35.18 N
ATOM 17 C5 A B 881 54.159 117.531 57.933 1.00 33.88 C
ATOM 18 C6 A B 881 52.867 117.077 57.636 1.00 33.67 C
ATOM 19 N6 A B 881 52.261 117.279 56.461 1.00 31.15 N
ATOM 20 N1 A B 881 52.210 116.392 58.594 1.00 34.46 N
ATOM 21 C2 A B 881 52.822 116.172 59.760 1.00 32.71 C
ATOM 22 N3 A B 881 54.031 116.540 60.156 1.00 34.04 N
ATOM 23 C4 A B 881 54.659 117.228 59.185 1.00 33.49 C
ATOM 24 P A B 882 60.463 117.719 63.117 1.00 27.76 P
ATOM 25 OP1 A B 882 59.937 117.693 64.512 1.00 27.40 O
ATOM 26 OP2 A B 882 61.213 118.908 62.644 1.00 28.22 O
ATOM 27 O5' A B 882 61.375 116.429 62.940 1.00 23.53 O
TER
Atoms:
C2: (64.792,119.434,61.275)
OP1: (64.624,115.955,56.475)
OP2: (63.157,116.493,54.437)
C4: (66.413,117.770,61.307)
O5': (63.269,118.042,56.383)
C3': (61.891,120.273,57.623)
C1': (63.040,119.476,59.530)
O4': (62.210,118.424,59.088)
C5': (61.902,117.856,56.753)
P: (64.042,116.943,55.536)
O2: (64.270,120.455,61.750)
C4': (61.533,118.812,57.862)
C2': (63.246,120.390,58.323)
O2': (63.532,121.701,58.772)
N1: (64.267,118.886,60.105)
N3: (65.860,118.849,61.860)
N4: (67.447,117.207,61.937)
C6: (64.865,117.802,59.527)
C5: (65.929,117.218,60.090)
O3': (60.939,121.092,58.295)
OP1: (64.624,115.955,56.475)
OP2: (63.157,116.493,54.437)
C4: (66.413,117.770,61.307)
O5': (63.269,118.042,56.383)
C3': (61.891,120.273,57.623)
C1': (63.040,119.476,59.530)
O4': (62.210,118.424,59.088)
C5': (61.902,117.856,56.753)
P: (64.042,116.943,55.536)
O2: (64.270,120.455,61.750)
C4': (61.533,118.812,57.862)
C2': (63.246,120.390,58.323)
O2': (63.532,121.701,58.772)
N1: (64.267,118.886,60.105)
N3: (65.860,118.849,61.860)
N4: (67.447,117.207,61.937)
C6: (64.865,117.802,59.527)
C5: (65.929,117.218,60.090)
O3': (60.939,121.092,58.295)
OP1: (59.297,120.415,56.510)
OP2: (58.924,122.501,57.952)
C3': (59.113,118.193,60.935)
C1': (56.861,117.743,60.346)
C5': (58.629,120.619,60.288)
O4': (56.891,119.044,60.903)
C8: (56.111,118.365,58.002)
O2': (58.535,116.032,59.933)
C6: (52.867,117.077,57.636)
C5: (54.159,117.531,57.933)
C4: (54.659,117.228,59.185)
P: (59.405,121.107,57.815)
C4': (58.267,119.438,61.162)
C2': (58.292,117.420,59.911)
C2: (52.822,116.172,59.760)
N1: (52.210,116.392,58.594)
N3: (54.031,116.540,60.156)
N6: (52.261,117.279,56.461)
N7: (55.088,118.250,57.195)
N9: (55.921,117.775,59.226)
O5': (58.664,120.219,58.903)
O3': (59.211,117.475,62.147)
OP2: (58.924,122.501,57.952)
C3': (59.113,118.193,60.935)
C1': (56.861,117.743,60.346)
C5': (58.629,120.619,60.288)
O4': (56.891,119.044,60.903)
C8: (56.111,118.365,58.002)
O2': (58.535,116.032,59.933)
C6: (52.867,117.077,57.636)
C5: (54.159,117.531,57.933)
C4: (54.659,117.228,59.185)
P: (59.405,121.107,57.815)
C4': (58.267,119.438,61.162)
C2': (58.292,117.420,59.911)
C2: (52.822,116.172,59.760)
N1: (52.210,116.392,58.594)
N3: (54.031,116.540,60.156)
N6: (52.261,117.279,56.461)
N7: (55.088,118.250,57.195)
N9: (55.921,117.775,59.226)
O5': (58.664,120.219,58.903)
O3': (59.211,117.475,62.147)
Image (generated by PyMOL):