Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3G9C:P111:P108
Extra
PDB:
ATOM 1 O3' G A 110 -11.510 -11.900 14.394 1.00 49.32 O
ATOM 2 P A A 111 -12.303 -13.286 14.549 1.00 49.33 P
ATOM 3 OP1 A A 111 -13.420 -13.277 13.577 1.00 49.34 O
ATOM 4 OP2 A A 111 -12.603 -13.512 15.983 1.00 48.71 O
ATOM 5 O5' A A 111 -11.217 -14.353 14.050 1.00 48.77 O
ATOM 6 C5' A A 111 -10.879 -14.423 12.663 1.00 48.11 C
ATOM 7 C4' A A 111 -9.591 -15.188 12.420 1.00 47.59 C
ATOM 8 O4' A A 111 -8.495 -14.595 13.162 1.00 46.86 O
ATOM 9 C3' A A 111 -9.597 -16.639 12.877 1.00 47.67 C
ATOM 10 O3' A A 111 -10.250 -17.456 11.911 1.00 48.60 O
ATOM 11 C2' A A 111 -8.101 -16.927 12.993 1.00 46.92 C
ATOM 12 O2' A A 111 -7.498 -17.228 11.746 1.00 47.03 O
ATOM 13 C1' A A 111 -7.558 -15.599 13.518 1.00 45.62 C
ATOM 14 N9 A A 111 -7.337 -15.521 14.962 1.00 43.60 N
ATOM 15 C8 A A 111 -8.278 -15.333 15.933 1.00 43.15 C
ATOM 16 N7 A A 111 -7.793 -15.291 17.152 1.00 42.54 N
ATOM 17 C5 A A 111 -6.432 -15.452 16.974 1.00 42.03 C
ATOM 18 C6 A A 111 -5.348 -15.500 17.880 1.00 41.50 C
ATOM 19 N6 A A 111 -5.474 -15.383 19.205 1.00 41.35 N
ATOM 20 N1 A A 111 -4.111 -15.677 17.372 1.00 41.32 N
ATOM 21 C2 A A 111 -3.971 -15.795 16.046 1.00 41.83 C
ATOM 22 N3 A A 111 -4.910 -15.771 15.098 1.00 42.45 N
ATOM 23 C4 A A 111 -6.134 -15.594 15.629 1.00 42.73 C
ATOM 24 P C A 112 -11.255 -18.615 12.377 1.00 50.19 P
ATOM 25 OP1 C A 112 -11.804 -19.242 11.154 1.00 49.97 O
ATOM 26 OP2 C A 112 -12.187 -18.079 13.400 1.00 50.06 O
ATOM 27 O5' C A 112 -10.263 -19.663 13.069 1.00 49.97 O
TER
ATOM 1 O3' G B 107 -10.819 -11.948 28.152 1.00 51.87 O
ATOM 2 P G B 108 -10.784 -10.512 27.445 1.00 51.97 P
ATOM 3 OP1 G B 108 -9.957 -9.620 28.289 1.00 52.43 O
ATOM 4 OP2 G B 108 -12.170 -10.133 27.085 1.00 51.64 O
ATOM 5 O5' G B 108 -10.005 -10.797 26.080 1.00 51.68 O
ATOM 6 C5' G B 108 -8.682 -11.343 26.079 1.00 51.04 C
ATOM 7 C4' G B 108 -8.235 -11.611 24.655 1.00 50.55 C
ATOM 8 O4' G B 108 -8.978 -12.730 24.105 1.00 50.18 O
ATOM 9 C3' G B 108 -8.538 -10.493 23.669 1.00 50.26 C
ATOM 10 O3' G B 108 -7.629 -9.405 23.800 1.00 50.72 O
ATOM 11 C2' G B 108 -8.417 -11.244 22.349 1.00 49.84 C
ATOM 12 O2' G B 108 -7.079 -11.468 21.949 1.00 49.76 O
ATOM 13 C1' G B 108 -9.120 -12.557 22.703 1.00 49.56 C
ATOM 14 N9 G B 108 -10.533 -12.514 22.318 1.00 48.88 N
ATOM 15 C8 G B 108 -11.611 -12.138 23.087 1.00 48.52 C
ATOM 16 N7 G B 108 -12.751 -12.184 22.453 1.00 48.06 N
ATOM 17 C5 G B 108 -12.413 -12.609 21.175 1.00 48.19 C
ATOM 18 C6 G B 108 -13.227 -12.845 20.035 1.00 48.22 C
ATOM 19 O6 G B 108 -14.457 -12.725 19.924 1.00 48.51 O
ATOM 20 N1 G B 108 -12.484 -13.271 18.936 1.00 47.98 N
ATOM 21 C2 G B 108 -11.121 -13.449 18.937 1.00 48.13 C
ATOM 22 N2 G B 108 -10.577 -13.865 17.787 1.00 48.05 N
ATOM 23 N3 G B 108 -10.345 -13.231 19.994 1.00 48.46 N
ATOM 24 C4 G B 108 -11.052 -12.815 21.077 1.00 48.47 C
ATOM 25 P U B 109 -8.178 -7.897 23.739 1.00 51.22 P
ATOM 26 OP1 U B 109 -7.026 -7.001 23.979 1.00 51.53 O
ATOM 27 OP2 U B 109 -9.383 -7.790 24.592 1.00 51.55 O
ATOM 28 O5' U B 109 -8.635 -7.749 22.215 1.00 51.42 O
TER
ATOM 2 P A A 111 -12.303 -13.286 14.549 1.00 49.33 P
ATOM 3 OP1 A A 111 -13.420 -13.277 13.577 1.00 49.34 O
ATOM 4 OP2 A A 111 -12.603 -13.512 15.983 1.00 48.71 O
ATOM 5 O5' A A 111 -11.217 -14.353 14.050 1.00 48.77 O
ATOM 6 C5' A A 111 -10.879 -14.423 12.663 1.00 48.11 C
ATOM 7 C4' A A 111 -9.591 -15.188 12.420 1.00 47.59 C
ATOM 8 O4' A A 111 -8.495 -14.595 13.162 1.00 46.86 O
ATOM 9 C3' A A 111 -9.597 -16.639 12.877 1.00 47.67 C
ATOM 10 O3' A A 111 -10.250 -17.456 11.911 1.00 48.60 O
ATOM 11 C2' A A 111 -8.101 -16.927 12.993 1.00 46.92 C
ATOM 12 O2' A A 111 -7.498 -17.228 11.746 1.00 47.03 O
ATOM 13 C1' A A 111 -7.558 -15.599 13.518 1.00 45.62 C
ATOM 14 N9 A A 111 -7.337 -15.521 14.962 1.00 43.60 N
ATOM 15 C8 A A 111 -8.278 -15.333 15.933 1.00 43.15 C
ATOM 16 N7 A A 111 -7.793 -15.291 17.152 1.00 42.54 N
ATOM 17 C5 A A 111 -6.432 -15.452 16.974 1.00 42.03 C
ATOM 18 C6 A A 111 -5.348 -15.500 17.880 1.00 41.50 C
ATOM 19 N6 A A 111 -5.474 -15.383 19.205 1.00 41.35 N
ATOM 20 N1 A A 111 -4.111 -15.677 17.372 1.00 41.32 N
ATOM 21 C2 A A 111 -3.971 -15.795 16.046 1.00 41.83 C
ATOM 22 N3 A A 111 -4.910 -15.771 15.098 1.00 42.45 N
ATOM 23 C4 A A 111 -6.134 -15.594 15.629 1.00 42.73 C
ATOM 24 P C A 112 -11.255 -18.615 12.377 1.00 50.19 P
ATOM 25 OP1 C A 112 -11.804 -19.242 11.154 1.00 49.97 O
ATOM 26 OP2 C A 112 -12.187 -18.079 13.400 1.00 50.06 O
ATOM 27 O5' C A 112 -10.263 -19.663 13.069 1.00 49.97 O
TER
ATOM 1 O3' G B 107 -10.819 -11.948 28.152 1.00 51.87 O
ATOM 2 P G B 108 -10.784 -10.512 27.445 1.00 51.97 P
ATOM 3 OP1 G B 108 -9.957 -9.620 28.289 1.00 52.43 O
ATOM 4 OP2 G B 108 -12.170 -10.133 27.085 1.00 51.64 O
ATOM 5 O5' G B 108 -10.005 -10.797 26.080 1.00 51.68 O
ATOM 6 C5' G B 108 -8.682 -11.343 26.079 1.00 51.04 C
ATOM 7 C4' G B 108 -8.235 -11.611 24.655 1.00 50.55 C
ATOM 8 O4' G B 108 -8.978 -12.730 24.105 1.00 50.18 O
ATOM 9 C3' G B 108 -8.538 -10.493 23.669 1.00 50.26 C
ATOM 10 O3' G B 108 -7.629 -9.405 23.800 1.00 50.72 O
ATOM 11 C2' G B 108 -8.417 -11.244 22.349 1.00 49.84 C
ATOM 12 O2' G B 108 -7.079 -11.468 21.949 1.00 49.76 O
ATOM 13 C1' G B 108 -9.120 -12.557 22.703 1.00 49.56 C
ATOM 14 N9 G B 108 -10.533 -12.514 22.318 1.00 48.88 N
ATOM 15 C8 G B 108 -11.611 -12.138 23.087 1.00 48.52 C
ATOM 16 N7 G B 108 -12.751 -12.184 22.453 1.00 48.06 N
ATOM 17 C5 G B 108 -12.413 -12.609 21.175 1.00 48.19 C
ATOM 18 C6 G B 108 -13.227 -12.845 20.035 1.00 48.22 C
ATOM 19 O6 G B 108 -14.457 -12.725 19.924 1.00 48.51 O
ATOM 20 N1 G B 108 -12.484 -13.271 18.936 1.00 47.98 N
ATOM 21 C2 G B 108 -11.121 -13.449 18.937 1.00 48.13 C
ATOM 22 N2 G B 108 -10.577 -13.865 17.787 1.00 48.05 N
ATOM 23 N3 G B 108 -10.345 -13.231 19.994 1.00 48.46 N
ATOM 24 C4 G B 108 -11.052 -12.815 21.077 1.00 48.47 C
ATOM 25 P U B 109 -8.178 -7.897 23.739 1.00 51.22 P
ATOM 26 OP1 U B 109 -7.026 -7.001 23.979 1.00 51.53 O
ATOM 27 OP2 U B 109 -9.383 -7.790 24.592 1.00 51.55 O
ATOM 28 O5' U B 109 -8.635 -7.749 22.215 1.00 51.42 O
TER
Atoms:
OP1: (-13.420,-13.277,13.577)
OP2: (-12.603,-13.512,15.983)
C3': (-9.597,-16.639,12.877)
C1': (-7.558,-15.599,13.518)
C5': (-10.879,-14.423,12.663)
O4': (-8.495,-14.595,13.162)
C8: (-8.278,-15.333,15.933)
O2': (-7.498,-17.228,11.746)
C6: (-5.348,-15.500,17.880)
C5: (-6.432,-15.452,16.974)
C4: (-6.134,-15.594,15.629)
P: (-12.303,-13.286,14.549)
C4': (-9.591,-15.188,12.420)
C2': (-8.101,-16.927,12.993)
C2: (-3.971,-15.795,16.046)
N1: (-4.111,-15.677,17.372)
N3: (-4.910,-15.771,15.098)
N6: (-5.474,-15.383,19.205)
N7: (-7.793,-15.291,17.152)
N9: (-7.337,-15.521,14.962)
O5': (-11.217,-14.353,14.050)
O3': (-10.250,-17.456,11.911)
OP2: (-12.603,-13.512,15.983)
C3': (-9.597,-16.639,12.877)
C1': (-7.558,-15.599,13.518)
C5': (-10.879,-14.423,12.663)
O4': (-8.495,-14.595,13.162)
C8: (-8.278,-15.333,15.933)
O2': (-7.498,-17.228,11.746)
C6: (-5.348,-15.500,17.880)
C5: (-6.432,-15.452,16.974)
C4: (-6.134,-15.594,15.629)
P: (-12.303,-13.286,14.549)
C4': (-9.591,-15.188,12.420)
C2': (-8.101,-16.927,12.993)
C2: (-3.971,-15.795,16.046)
N1: (-4.111,-15.677,17.372)
N3: (-4.910,-15.771,15.098)
N6: (-5.474,-15.383,19.205)
N7: (-7.793,-15.291,17.152)
N9: (-7.337,-15.521,14.962)
O5': (-11.217,-14.353,14.050)
O3': (-10.250,-17.456,11.911)
OP1: (-9.957,-9.620,28.289)
OP2: (-12.170,-10.133,27.085)
C3': (-8.538,-10.493,23.669)
C1': (-9.120,-12.557,22.703)
C5': (-8.682,-11.343,26.079)
O6: (-14.457,-12.725,19.924)
O4': (-8.978,-12.730,24.105)
C8: (-11.611,-12.138,23.087)
C2: (-11.121,-13.449,18.937)
C6: (-13.227,-12.845,20.035)
C5: (-12.413,-12.609,21.175)
C4: (-11.052,-12.815,21.077)
P: (-10.784,-10.512,27.445)
C4': (-8.235,-11.611,24.655)
C2': (-8.417,-11.244,22.349)
O2': (-7.079,-11.468,21.949)
N1: (-12.484,-13.271,18.936)
N2: (-10.577,-13.865,17.787)
N3: (-10.345,-13.231,19.994)
N7: (-12.751,-12.184,22.453)
N9: (-10.533,-12.514,22.318)
O5': (-10.005,-10.797,26.080)
O3': (-7.629,-9.405,23.800)
OP2: (-12.170,-10.133,27.085)
C3': (-8.538,-10.493,23.669)
C1': (-9.120,-12.557,22.703)
C5': (-8.682,-11.343,26.079)
O6: (-14.457,-12.725,19.924)
O4': (-8.978,-12.730,24.105)
C8: (-11.611,-12.138,23.087)
C2: (-11.121,-13.449,18.937)
C6: (-13.227,-12.845,20.035)
C5: (-12.413,-12.609,21.175)
C4: (-11.052,-12.815,21.077)
P: (-10.784,-10.512,27.445)
C4': (-8.235,-11.611,24.655)
C2': (-8.417,-11.244,22.349)
O2': (-7.079,-11.468,21.949)
N1: (-12.484,-13.271,18.936)
N2: (-10.577,-13.865,17.787)
N3: (-10.345,-13.231,19.994)
N7: (-12.751,-12.184,22.453)
N9: (-10.533,-12.514,22.318)
O5': (-10.005,-10.797,26.080)
O3': (-7.629,-9.405,23.800)
Image (generated by PyMOL):