Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A61:A58
Extra
PDB:
ATOM 1 O3' G A 60 -20.799 13.894 0.301 1.00 22.60 O
ATOM 2 P A A 61 -20.170 12.606 1.026 1.00 27.19 P
ATOM 3 OP1 A A 61 -21.171 12.132 2.015 1.00 29.06 O
ATOM 4 OP2 A A 61 -18.820 12.986 1.507 1.00 22.14 O
ATOM 5 O5' A A 61 -20.045 11.556 -0.162 1.00 21.33 O
ATOM 6 C5' A A 61 -21.200 10.996 -0.767 1.00 23.09 C
ATOM 7 C4' A A 61 -20.826 10.069 -1.894 1.00 25.35 C
ATOM 8 O4' A A 61 -20.276 10.838 -2.995 1.00 24.30 O
ATOM 9 C3' A A 61 -19.746 9.048 -1.572 1.00 26.30 C
ATOM 10 O3' A A 61 -20.252 7.900 -0.917 1.00 29.49 O
ATOM 11 C2' A A 61 -19.136 8.755 -2.935 1.00 25.54 C
ATOM 12 O2' A A 61 -19.949 7.846 -3.662 1.00 31.01 O
ATOM 13 C1' A A 61 -19.223 10.124 -3.607 1.00 24.27 C
ATOM 14 N9 A A 61 -17.982 10.906 -3.448 1.00 23.27 N
ATOM 15 C8 A A 61 -17.548 11.586 -2.334 1.00 22.62 C
ATOM 16 N7 A A 61 -16.404 12.208 -2.503 1.00 19.49 N
ATOM 17 C5 A A 61 -16.068 11.926 -3.821 1.00 20.98 C
ATOM 18 C6 A A 61 -14.968 12.294 -4.615 1.00 22.17 C
ATOM 19 N6 A A 61 -13.959 13.059 -4.181 1.00 20.57 N
ATOM 20 N1 A A 61 -14.940 11.842 -5.890 1.00 22.73 N
ATOM 21 C2 A A 61 -15.948 11.076 -6.326 1.00 23.69 C
ATOM 22 N3 A A 61 -17.035 10.664 -5.674 1.00 26.02 N
ATOM 23 C4 A A 61 -17.034 11.129 -4.414 1.00 22.36 C
ATOM 24 P G A 62 -19.292 7.022 0.022 1.00 34.22 P
ATOM 25 OP1 G A 62 -20.003 5.752 0.307 1.00 37.87 O
ATOM 26 OP2 G A 62 -18.885 7.884 1.162 1.00 27.72 O
ATOM 27 O5' G A 62 -18.041 6.747 -0.924 1.00 33.45 O
TER
ATOM 1 O3' C B 57 -9.603 20.284 3.979 1.00 21.08 O
ATOM 2 P G B 58 -10.799 21.277 3.583 1.00 21.66 P
ATOM 3 OP1 G B 58 -10.178 22.518 3.055 1.00 24.92 O
ATOM 4 OP2 G B 58 -11.696 21.373 4.762 1.00 19.57 O
ATOM 5 O5' G B 58 -11.532 20.490 2.405 1.00 18.58 O
ATOM 6 C5' G B 58 -10.810 20.064 1.260 1.00 18.28 C
ATOM 7 C4' G B 58 -11.613 19.108 0.410 1.00 16.79 C
ATOM 8 O4' G B 58 -11.739 17.828 1.079 1.00 19.51 O
ATOM 9 C3' G B 58 -13.051 19.504 0.121 1.00 18.67 C
ATOM 10 O3' G B 58 -13.163 20.491 -0.890 1.00 21.20 O
ATOM 11 C2' G B 58 -13.685 18.167 -0.251 1.00 20.11 C
ATOM 12 O2' G B 58 -13.374 17.814 -1.590 1.00 24.02 O
ATOM 13 C1' G B 58 -12.948 17.207 0.689 1.00 19.71 C
ATOM 14 N9 G B 58 -13.747 16.907 1.890 1.00 17.76 N
ATOM 15 C8 G B 58 -13.707 17.493 3.133 1.00 16.39 C
ATOM 16 N7 G B 58 -14.594 16.989 3.951 1.00 17.04 N
ATOM 17 C5 G B 58 -15.260 16.029 3.199 1.00 16.85 C
ATOM 18 C6 G B 58 -16.324 15.152 3.535 1.00 20.58 C
ATOM 19 O6 G B 58 -16.919 15.038 4.613 1.00 25.81 O
ATOM 20 N1 G B 58 -16.687 14.347 2.460 1.00 17.35 N
ATOM 21 C2 G B 58 -16.105 14.373 1.217 1.00 18.40 C
ATOM 22 N2 G B 58 -16.592 13.519 0.303 1.00 18.92 N
ATOM 23 N3 G B 58 -15.115 15.182 0.894 1.00 17.01 N
ATOM 24 C4 G B 58 -14.748 15.971 1.926 1.00 17.60 C
ATOM 25 P A B 59 -14.061 21.805 -0.646 1.00 26.37 P
ATOM 26 OP1 A B 59 -14.030 22.592 -1.902 1.00 23.76 O
ATOM 27 OP2 A B 59 -13.580 22.440 0.604 1.00 18.80 O
ATOM 28 O5' A B 59 -15.517 21.200 -0.421 1.00 25.11 O
TER
ATOM 2 P A A 61 -20.170 12.606 1.026 1.00 27.19 P
ATOM 3 OP1 A A 61 -21.171 12.132 2.015 1.00 29.06 O
ATOM 4 OP2 A A 61 -18.820 12.986 1.507 1.00 22.14 O
ATOM 5 O5' A A 61 -20.045 11.556 -0.162 1.00 21.33 O
ATOM 6 C5' A A 61 -21.200 10.996 -0.767 1.00 23.09 C
ATOM 7 C4' A A 61 -20.826 10.069 -1.894 1.00 25.35 C
ATOM 8 O4' A A 61 -20.276 10.838 -2.995 1.00 24.30 O
ATOM 9 C3' A A 61 -19.746 9.048 -1.572 1.00 26.30 C
ATOM 10 O3' A A 61 -20.252 7.900 -0.917 1.00 29.49 O
ATOM 11 C2' A A 61 -19.136 8.755 -2.935 1.00 25.54 C
ATOM 12 O2' A A 61 -19.949 7.846 -3.662 1.00 31.01 O
ATOM 13 C1' A A 61 -19.223 10.124 -3.607 1.00 24.27 C
ATOM 14 N9 A A 61 -17.982 10.906 -3.448 1.00 23.27 N
ATOM 15 C8 A A 61 -17.548 11.586 -2.334 1.00 22.62 C
ATOM 16 N7 A A 61 -16.404 12.208 -2.503 1.00 19.49 N
ATOM 17 C5 A A 61 -16.068 11.926 -3.821 1.00 20.98 C
ATOM 18 C6 A A 61 -14.968 12.294 -4.615 1.00 22.17 C
ATOM 19 N6 A A 61 -13.959 13.059 -4.181 1.00 20.57 N
ATOM 20 N1 A A 61 -14.940 11.842 -5.890 1.00 22.73 N
ATOM 21 C2 A A 61 -15.948 11.076 -6.326 1.00 23.69 C
ATOM 22 N3 A A 61 -17.035 10.664 -5.674 1.00 26.02 N
ATOM 23 C4 A A 61 -17.034 11.129 -4.414 1.00 22.36 C
ATOM 24 P G A 62 -19.292 7.022 0.022 1.00 34.22 P
ATOM 25 OP1 G A 62 -20.003 5.752 0.307 1.00 37.87 O
ATOM 26 OP2 G A 62 -18.885 7.884 1.162 1.00 27.72 O
ATOM 27 O5' G A 62 -18.041 6.747 -0.924 1.00 33.45 O
TER
ATOM 1 O3' C B 57 -9.603 20.284 3.979 1.00 21.08 O
ATOM 2 P G B 58 -10.799 21.277 3.583 1.00 21.66 P
ATOM 3 OP1 G B 58 -10.178 22.518 3.055 1.00 24.92 O
ATOM 4 OP2 G B 58 -11.696 21.373 4.762 1.00 19.57 O
ATOM 5 O5' G B 58 -11.532 20.490 2.405 1.00 18.58 O
ATOM 6 C5' G B 58 -10.810 20.064 1.260 1.00 18.28 C
ATOM 7 C4' G B 58 -11.613 19.108 0.410 1.00 16.79 C
ATOM 8 O4' G B 58 -11.739 17.828 1.079 1.00 19.51 O
ATOM 9 C3' G B 58 -13.051 19.504 0.121 1.00 18.67 C
ATOM 10 O3' G B 58 -13.163 20.491 -0.890 1.00 21.20 O
ATOM 11 C2' G B 58 -13.685 18.167 -0.251 1.00 20.11 C
ATOM 12 O2' G B 58 -13.374 17.814 -1.590 1.00 24.02 O
ATOM 13 C1' G B 58 -12.948 17.207 0.689 1.00 19.71 C
ATOM 14 N9 G B 58 -13.747 16.907 1.890 1.00 17.76 N
ATOM 15 C8 G B 58 -13.707 17.493 3.133 1.00 16.39 C
ATOM 16 N7 G B 58 -14.594 16.989 3.951 1.00 17.04 N
ATOM 17 C5 G B 58 -15.260 16.029 3.199 1.00 16.85 C
ATOM 18 C6 G B 58 -16.324 15.152 3.535 1.00 20.58 C
ATOM 19 O6 G B 58 -16.919 15.038 4.613 1.00 25.81 O
ATOM 20 N1 G B 58 -16.687 14.347 2.460 1.00 17.35 N
ATOM 21 C2 G B 58 -16.105 14.373 1.217 1.00 18.40 C
ATOM 22 N2 G B 58 -16.592 13.519 0.303 1.00 18.92 N
ATOM 23 N3 G B 58 -15.115 15.182 0.894 1.00 17.01 N
ATOM 24 C4 G B 58 -14.748 15.971 1.926 1.00 17.60 C
ATOM 25 P A B 59 -14.061 21.805 -0.646 1.00 26.37 P
ATOM 26 OP1 A B 59 -14.030 22.592 -1.902 1.00 23.76 O
ATOM 27 OP2 A B 59 -13.580 22.440 0.604 1.00 18.80 O
ATOM 28 O5' A B 59 -15.517 21.200 -0.421 1.00 25.11 O
TER
Atoms:
OP1: (-21.171,12.132,2.015)
OP2: (-18.820,12.986,1.507)
C3': (-19.746,9.048,-1.572)
C1': (-19.223,10.124,-3.607)
C5': (-21.200,10.996,-0.767)
O4': (-20.276,10.838,-2.995)
C8: (-17.548,11.586,-2.334)
O2': (-19.949,7.846,-3.662)
C6: (-14.968,12.294,-4.615)
C5: (-16.068,11.926,-3.821)
C4: (-17.034,11.129,-4.414)
P: (-20.170,12.606,1.026)
C4': (-20.826,10.069,-1.894)
C2': (-19.136,8.755,-2.935)
C2: (-15.948,11.076,-6.326)
N1: (-14.940,11.842,-5.890)
N3: (-17.035,10.664,-5.674)
N6: (-13.959,13.059,-4.181)
N7: (-16.404,12.208,-2.503)
N9: (-17.982,10.906,-3.448)
O5': (-20.045,11.556,-0.162)
O3': (-20.252,7.900,-0.917)
OP2: (-18.820,12.986,1.507)
C3': (-19.746,9.048,-1.572)
C1': (-19.223,10.124,-3.607)
C5': (-21.200,10.996,-0.767)
O4': (-20.276,10.838,-2.995)
C8: (-17.548,11.586,-2.334)
O2': (-19.949,7.846,-3.662)
C6: (-14.968,12.294,-4.615)
C5: (-16.068,11.926,-3.821)
C4: (-17.034,11.129,-4.414)
P: (-20.170,12.606,1.026)
C4': (-20.826,10.069,-1.894)
C2': (-19.136,8.755,-2.935)
C2: (-15.948,11.076,-6.326)
N1: (-14.940,11.842,-5.890)
N3: (-17.035,10.664,-5.674)
N6: (-13.959,13.059,-4.181)
N7: (-16.404,12.208,-2.503)
N9: (-17.982,10.906,-3.448)
O5': (-20.045,11.556,-0.162)
O3': (-20.252,7.900,-0.917)
OP1: (-10.178,22.518,3.055)
OP2: (-11.696,21.373,4.762)
C3': (-13.051,19.504,0.121)
C1': (-12.948,17.207,0.689)
C5': (-10.810,20.064,1.260)
O6: (-16.919,15.038,4.613)
O4': (-11.739,17.828,1.079)
C8: (-13.707,17.493,3.133)
C2: (-16.105,14.373,1.217)
C6: (-16.324,15.152,3.535)
C5: (-15.260,16.029,3.199)
C4: (-14.748,15.971,1.926)
P: (-10.799,21.277,3.583)
C4': (-11.613,19.108,0.410)
C2': (-13.685,18.167,-0.251)
O2': (-13.374,17.814,-1.590)
N1: (-16.687,14.347,2.460)
N2: (-16.592,13.519,0.303)
N3: (-15.115,15.182,0.894)
N7: (-14.594,16.989,3.951)
N9: (-13.747,16.907,1.890)
O5': (-11.532,20.490,2.405)
O3': (-13.163,20.491,-0.890)
OP2: (-11.696,21.373,4.762)
C3': (-13.051,19.504,0.121)
C1': (-12.948,17.207,0.689)
C5': (-10.810,20.064,1.260)
O6: (-16.919,15.038,4.613)
O4': (-11.739,17.828,1.079)
C8: (-13.707,17.493,3.133)
C2: (-16.105,14.373,1.217)
C6: (-16.324,15.152,3.535)
C5: (-15.260,16.029,3.199)
C4: (-14.748,15.971,1.926)
P: (-10.799,21.277,3.583)
C4': (-11.613,19.108,0.410)
C2': (-13.685,18.167,-0.251)
O2': (-13.374,17.814,-1.590)
N1: (-16.687,14.347,2.460)
N2: (-16.592,13.519,0.303)
N3: (-15.115,15.182,0.894)
N7: (-14.594,16.989,3.951)
N9: (-13.747,16.907,1.890)
O5': (-11.532,20.490,2.405)
O3': (-13.163,20.491,-0.890)
Image (generated by PyMOL):