ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:1358:1355

Extra

PDB:
ATOM 1 O3' G A 357 43.585 5.513 109.970 1.00 41.97 O
ATOM 2 P A A 358 45.003 5.001 109.459 1.00 40.63 P
ATOM 3 OP1 A A 358 45.914 4.873 110.638 1.00 41.00 O
ATOM 4 OP2 A A 358 45.396 5.907 108.330 1.00 40.42 O
ATOM 5 O5' A A 358 44.674 3.554 108.898 1.00 40.32 O
ATOM 6 C5' A A 358 44.197 2.548 109.756 1.00 40.46 C
ATOM 7 C4' A A 358 43.716 1.369 108.976 1.00 40.12 C
ATOM 8 O4' A A 358 42.623 1.743 108.126 1.00 39.89 O
ATOM 9 C3' A A 358 44.709 0.744 108.047 1.00 39.86 C
ATOM 10 O3' A A 358 45.533 -0.118 108.767 1.00 40.03 O
ATOM 11 C2' A A 358 43.805 -0.002 107.106 1.00 39.52 C
ATOM 12 O2' A A 358 43.352 -1.163 107.768 1.00 39.60 O
ATOM 13 C1' A A 358 42.617 0.949 106.986 1.00 39.52 C
ATOM 14 N9 A A 358 42.677 1.866 105.850 1.00 39.29 N
ATOM 15 C8 A A 358 43.505 2.934 105.788 1.00 39.39 C
ATOM 16 N7 A A 358 43.293 3.681 104.749 1.00 39.18 N
ATOM 17 C5 A A 358 42.200 3.132 104.127 1.00 38.95 C
ATOM 18 C6 A A 358 41.466 3.463 102.976 1.00 38.68 C
ATOM 19 N6 A A 358 41.718 4.470 102.205 1.00 38.59 N
ATOM 20 N1 A A 358 40.427 2.724 102.599 1.00 38.51 N
ATOM 21 C2 A A 358 40.133 1.689 103.370 1.00 38.61 C
ATOM 22 N3 A A 358 40.770 1.279 104.484 1.00 38.86 N
ATOM 23 C4 A A 358 41.799 2.041 104.831 1.00 39.02 C
ATOM 24 P U A 359 47.081 -0.311 108.439 1.00 35.56 P
ATOM 25 OP1 U A 359 47.541 -1.334 109.382 1.00 35.78 O
ATOM 26 OP2 U A 359 47.726 1.023 108.452 1.00 35.69 O
ATOM 27 O5' U A 359 47.063 -0.906 106.980 1.00 35.12 O
TER

ATOM 1 O3' A B 354 45.674 14.464 99.986 1.00 36.26 O
ATOM 2 P G B 355 44.762 15.072 101.136 1.00 42.33 P
ATOM 3 OP1 G B 355 43.785 16.042 100.480 1.00 42.31 O
ATOM 4 OP2 G B 355 45.669 15.560 102.174 1.00 42.68 O
ATOM 5 O5' G B 355 43.987 13.820 101.662 1.00 42.23 O
ATOM 6 C5' G B 355 43.218 13.053 100.770 1.00 41.89 C
ATOM 7 C4' G B 355 42.973 11.704 101.311 1.00 41.82 C
ATOM 8 O4' G B 355 44.219 11.007 101.485 1.00 41.79 O
ATOM 9 C3' G B 355 42.341 11.644 102.676 1.00 42.12 C
ATOM 10 O3' G B 355 40.969 11.915 102.624 1.00 42.13 O
ATOM 11 C2' G B 355 42.640 10.214 103.058 1.00 42.03 C
ATOM 12 O2' G B 355 41.734 9.342 102.394 1.00 41.74 O
ATOM 13 C1' G B 355 44.050 10.012 102.455 1.00 41.89 C
ATOM 14 N9 G B 355 45.067 10.164 103.481 1.00 42.19 N
ATOM 15 C8 G B 355 45.718 11.295 103.830 1.00 42.45 C
ATOM 16 N7 G B 355 46.437 11.155 104.918 1.00 42.74 N
ATOM 17 C5 G B 355 46.234 9.852 105.294 1.00 42.65 C
ATOM 18 C6 G B 355 46.775 9.143 106.382 1.00 42.87 C
ATOM 19 O6 G B 355 47.576 9.580 107.235 1.00 43.20 O
ATOM 20 N1 G B 355 46.325 7.826 106.433 1.00 42.71 N
ATOM 21 C2 G B 355 45.461 7.290 105.528 1.00 42.37 C
ATOM 22 N2 G B 355 45.135 6.017 105.732 1.00 42.28 N
ATOM 23 N3 G B 355 44.953 7.952 104.491 1.00 42.17 N
ATOM 24 C4 G B 355 45.375 9.234 104.436 1.00 42.32 C
ATOM 25 P U B 356 40.270 12.977 103.597 1.00 40.89 P
ATOM 26 OP1 U B 356 38.809 12.814 103.444 1.00 40.81 O
ATOM 27 OP2 U B 356 40.833 14.270 103.304 1.00 41.02 O
ATOM 28 O5' U B 356 40.716 12.479 105.035 1.00 41.18 O
TER

Atoms:
OP1: (45.914,4.873,110.638)
OP2: (45.396,5.907,108.330)
C3': (44.709,0.744,108.047)
C1': (42.617,0.949,106.986)
C5': (44.197,2.548,109.756)
O4': (42.623,1.743,108.126)
C8: (43.505,2.934,105.788)
O2': (43.352,-1.163,107.768)
C6: (41.466,3.463,102.976)
C5: (42.200,3.132,104.127)
C4: (41.799,2.041,104.831)
P: (45.003,5.001,109.459)
C4': (43.716,1.369,108.976)
C2': (43.805,-0.002,107.106)
C2: (40.133,1.689,103.370)
N1: (40.427,2.724,102.599)
N3: (40.770,1.279,104.484)
N6: (41.718,4.470,102.205)
N7: (43.293,3.681,104.749)
N9: (42.677,1.866,105.850)
O5': (44.674,3.554,108.898)
O3': (45.533,-0.118,108.767)
OP1: (43.785,16.042,100.480)
OP2: (45.669,15.560,102.174)
C3': (42.341,11.644,102.676)
C1': (44.050,10.012,102.455)
C5': (43.218,13.053,100.770)
O6: (47.576,9.580,107.235)
O4': (44.219,11.007,101.485)
C8: (45.718,11.295,103.830)
C2: (45.461,7.290,105.528)
C6: (46.775,9.143,106.382)
C5: (46.234,9.852,105.294)
C4: (45.375,9.234,104.436)
P: (44.762,15.072,101.136)
C4': (42.973,11.704,101.311)
C2': (42.640,10.214,103.058)
O2': (41.734,9.342,102.394)
N1: (46.325,7.826,106.433)
N2: (45.135,6.017,105.732)
N3: (44.953,7.952,104.491)
N7: (46.437,11.155,104.918)
N9: (45.067,10.164,103.481)
O5': (43.987,13.820,101.662)
O3': (40.969,11.915,102.624)
Image (generated by PyMOL):
PyMOL image
show in jmol