Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12031:12028
Extra
PDB:
ATOM 1 O3' A A2030 26.543 -61.640 112.139 1.00 72.27 O
ATOM 2 P A A2031 25.542 -60.582 111.518 1.00 62.43 P
ATOM 3 OP1 A A2031 25.373 -59.507 112.533 1.00 62.38 O
ATOM 4 OP2 A A2031 24.346 -61.318 111.046 1.00 62.56 O
ATOM 5 O5' A A2031 26.372 -60.049 110.265 1.00 61.92 O
ATOM 6 C5' A A2031 27.373 -59.056 110.431 1.00 61.65 C
ATOM 7 C4' A A2031 28.334 -59.031 109.280 1.00 61.33 C
ATOM 8 O4' A A2031 28.687 -60.383 108.910 1.00 61.64 O
ATOM 9 C3' A A2031 27.818 -58.431 107.989 1.00 60.85 C
ATOM 10 O3' A A2031 27.833 -57.022 107.983 1.00 60.44 O
ATOM 11 C2' A A2031 28.764 -59.040 106.974 1.00 60.77 C
ATOM 12 O2' A A2031 30.048 -58.436 107.050 1.00 60.60 O
ATOM 13 C1' A A2031 28.884 -60.450 107.513 1.00 61.32 C
ATOM 14 N9 A A2031 27.865 -61.341 106.934 1.00 61.48 N
ATOM 15 C8 A A2031 26.608 -61.531 107.419 1.00 61.68 C
ATOM 16 N7 A A2031 25.943 -62.398 106.707 1.00 61.80 N
ATOM 17 C5 A A2031 26.810 -62.808 105.696 1.00 61.68 C
ATOM 18 C6 A A2031 26.680 -63.720 104.615 1.00 61.74 C
ATOM 19 N6 A A2031 25.577 -64.436 104.352 1.00 61.95 N
ATOM 20 N1 A A2031 27.746 -63.866 103.788 1.00 61.58 N
ATOM 21 C2 A A2031 28.856 -63.163 104.041 1.00 61.39 C
ATOM 22 N3 A A2031 29.074 -62.296 105.021 1.00 61.32 N
ATOM 23 C4 A A2031 28.007 -62.149 105.822 1.00 61.47 C
ATOM 24 P U A2032 26.468 -56.189 107.944 1.00 62.20 P
ATOM 25 OP1 U A2032 26.810 -54.805 107.532 1.00 61.71 O
ATOM 26 OP2 U A2032 25.800 -56.405 109.245 1.00 62.59 O
ATOM 27 O5' U A2032 25.640 -56.887 106.796 1.00 62.14 O
TER
ATOM 1 O3' A B2027 17.351 -70.464 107.851 1.00 67.26 O
ATOM 2 P G B2028 18.353 -71.146 108.914 1.00 72.34 P
ATOM 3 OP1 G B2028 18.454 -72.582 108.552 1.00 72.79 O
ATOM 4 OP2 G B2028 17.881 -70.772 110.275 1.00 72.56 O
ATOM 5 O5' G B2028 19.734 -70.424 108.607 1.00 71.93 O
ATOM 6 C5' G B2028 20.365 -70.574 107.339 1.00 71.66 C
ATOM 7 C4' G B2028 21.502 -69.614 107.165 1.00 71.22 C
ATOM 8 O4' G B2028 20.999 -68.258 107.159 1.00 70.76 O
ATOM 9 C3' G B2028 22.534 -69.589 108.268 1.00 71.43 C
ATOM 10 O3' G B2028 23.407 -70.688 108.233 1.00 71.79 O
ATOM 11 C2' G B2028 23.215 -68.261 108.017 1.00 70.87 C
ATOM 12 O2' G B2028 24.102 -68.352 106.905 1.00 70.61 O
ATOM 13 C1' G B2028 22.005 -67.385 107.627 1.00 70.52 C
ATOM 14 N9 G B2028 21.502 -66.645 108.798 1.00 70.56 N
ATOM 15 C8 G B2028 20.607 -67.063 109.743 1.00 70.97 C
ATOM 16 N7 G B2028 20.479 -66.207 110.724 1.00 70.93 N
ATOM 17 C5 G B2028 21.370 -65.183 110.431 1.00 70.47 C
ATOM 18 C6 G B2028 21.685 -63.992 111.129 1.00 70.24 C
ATOM 19 O6 G B2028 21.250 -63.536 112.176 1.00 70.39 O
ATOM 20 N1 G B2028 22.637 -63.253 110.478 1.00 69.80 N
ATOM 21 C2 G B2028 23.241 -63.602 109.297 1.00 69.60 C
ATOM 22 N2 G B2028 24.164 -62.723 108.856 1.00 69.18 N
ATOM 23 N3 G B2028 22.954 -64.709 108.620 1.00 69.81 N
ATOM 24 C4 G B2028 22.015 -65.450 109.247 1.00 70.24 C
ATOM 25 P A B2029 23.557 -71.633 109.521 1.00 68.30 P
ATOM 26 OP1 A B2029 24.489 -72.721 109.165 1.00 68.60 O
ATOM 27 OP2 A B2029 22.204 -71.985 109.977 1.00 68.59 O
ATOM 28 O5' A B2029 24.231 -70.682 110.576 1.00 68.19 O
TER
ATOM 2 P A A2031 25.542 -60.582 111.518 1.00 62.43 P
ATOM 3 OP1 A A2031 25.373 -59.507 112.533 1.00 62.38 O
ATOM 4 OP2 A A2031 24.346 -61.318 111.046 1.00 62.56 O
ATOM 5 O5' A A2031 26.372 -60.049 110.265 1.00 61.92 O
ATOM 6 C5' A A2031 27.373 -59.056 110.431 1.00 61.65 C
ATOM 7 C4' A A2031 28.334 -59.031 109.280 1.00 61.33 C
ATOM 8 O4' A A2031 28.687 -60.383 108.910 1.00 61.64 O
ATOM 9 C3' A A2031 27.818 -58.431 107.989 1.00 60.85 C
ATOM 10 O3' A A2031 27.833 -57.022 107.983 1.00 60.44 O
ATOM 11 C2' A A2031 28.764 -59.040 106.974 1.00 60.77 C
ATOM 12 O2' A A2031 30.048 -58.436 107.050 1.00 60.60 O
ATOM 13 C1' A A2031 28.884 -60.450 107.513 1.00 61.32 C
ATOM 14 N9 A A2031 27.865 -61.341 106.934 1.00 61.48 N
ATOM 15 C8 A A2031 26.608 -61.531 107.419 1.00 61.68 C
ATOM 16 N7 A A2031 25.943 -62.398 106.707 1.00 61.80 N
ATOM 17 C5 A A2031 26.810 -62.808 105.696 1.00 61.68 C
ATOM 18 C6 A A2031 26.680 -63.720 104.615 1.00 61.74 C
ATOM 19 N6 A A2031 25.577 -64.436 104.352 1.00 61.95 N
ATOM 20 N1 A A2031 27.746 -63.866 103.788 1.00 61.58 N
ATOM 21 C2 A A2031 28.856 -63.163 104.041 1.00 61.39 C
ATOM 22 N3 A A2031 29.074 -62.296 105.021 1.00 61.32 N
ATOM 23 C4 A A2031 28.007 -62.149 105.822 1.00 61.47 C
ATOM 24 P U A2032 26.468 -56.189 107.944 1.00 62.20 P
ATOM 25 OP1 U A2032 26.810 -54.805 107.532 1.00 61.71 O
ATOM 26 OP2 U A2032 25.800 -56.405 109.245 1.00 62.59 O
ATOM 27 O5' U A2032 25.640 -56.887 106.796 1.00 62.14 O
TER
ATOM 1 O3' A B2027 17.351 -70.464 107.851 1.00 67.26 O
ATOM 2 P G B2028 18.353 -71.146 108.914 1.00 72.34 P
ATOM 3 OP1 G B2028 18.454 -72.582 108.552 1.00 72.79 O
ATOM 4 OP2 G B2028 17.881 -70.772 110.275 1.00 72.56 O
ATOM 5 O5' G B2028 19.734 -70.424 108.607 1.00 71.93 O
ATOM 6 C5' G B2028 20.365 -70.574 107.339 1.00 71.66 C
ATOM 7 C4' G B2028 21.502 -69.614 107.165 1.00 71.22 C
ATOM 8 O4' G B2028 20.999 -68.258 107.159 1.00 70.76 O
ATOM 9 C3' G B2028 22.534 -69.589 108.268 1.00 71.43 C
ATOM 10 O3' G B2028 23.407 -70.688 108.233 1.00 71.79 O
ATOM 11 C2' G B2028 23.215 -68.261 108.017 1.00 70.87 C
ATOM 12 O2' G B2028 24.102 -68.352 106.905 1.00 70.61 O
ATOM 13 C1' G B2028 22.005 -67.385 107.627 1.00 70.52 C
ATOM 14 N9 G B2028 21.502 -66.645 108.798 1.00 70.56 N
ATOM 15 C8 G B2028 20.607 -67.063 109.743 1.00 70.97 C
ATOM 16 N7 G B2028 20.479 -66.207 110.724 1.00 70.93 N
ATOM 17 C5 G B2028 21.370 -65.183 110.431 1.00 70.47 C
ATOM 18 C6 G B2028 21.685 -63.992 111.129 1.00 70.24 C
ATOM 19 O6 G B2028 21.250 -63.536 112.176 1.00 70.39 O
ATOM 20 N1 G B2028 22.637 -63.253 110.478 1.00 69.80 N
ATOM 21 C2 G B2028 23.241 -63.602 109.297 1.00 69.60 C
ATOM 22 N2 G B2028 24.164 -62.723 108.856 1.00 69.18 N
ATOM 23 N3 G B2028 22.954 -64.709 108.620 1.00 69.81 N
ATOM 24 C4 G B2028 22.015 -65.450 109.247 1.00 70.24 C
ATOM 25 P A B2029 23.557 -71.633 109.521 1.00 68.30 P
ATOM 26 OP1 A B2029 24.489 -72.721 109.165 1.00 68.60 O
ATOM 27 OP2 A B2029 22.204 -71.985 109.977 1.00 68.59 O
ATOM 28 O5' A B2029 24.231 -70.682 110.576 1.00 68.19 O
TER
Atoms:
OP1: (25.373,-59.507,112.533)
OP2: (24.346,-61.318,111.046)
C3': (27.818,-58.431,107.989)
C1': (28.884,-60.450,107.513)
C5': (27.373,-59.056,110.431)
O4': (28.687,-60.383,108.910)
C8: (26.608,-61.531,107.419)
O2': (30.048,-58.436,107.050)
C6: (26.680,-63.720,104.615)
C5: (26.810,-62.808,105.696)
C4: (28.007,-62.149,105.822)
P: (25.542,-60.582,111.518)
C4': (28.334,-59.031,109.280)
C2': (28.764,-59.040,106.974)
C2: (28.856,-63.163,104.041)
N1: (27.746,-63.866,103.788)
N3: (29.074,-62.296,105.021)
N6: (25.577,-64.436,104.352)
N7: (25.943,-62.398,106.707)
N9: (27.865,-61.341,106.934)
O5': (26.372,-60.049,110.265)
O3': (27.833,-57.022,107.983)
OP2: (24.346,-61.318,111.046)
C3': (27.818,-58.431,107.989)
C1': (28.884,-60.450,107.513)
C5': (27.373,-59.056,110.431)
O4': (28.687,-60.383,108.910)
C8: (26.608,-61.531,107.419)
O2': (30.048,-58.436,107.050)
C6: (26.680,-63.720,104.615)
C5: (26.810,-62.808,105.696)
C4: (28.007,-62.149,105.822)
P: (25.542,-60.582,111.518)
C4': (28.334,-59.031,109.280)
C2': (28.764,-59.040,106.974)
C2: (28.856,-63.163,104.041)
N1: (27.746,-63.866,103.788)
N3: (29.074,-62.296,105.021)
N6: (25.577,-64.436,104.352)
N7: (25.943,-62.398,106.707)
N9: (27.865,-61.341,106.934)
O5': (26.372,-60.049,110.265)
O3': (27.833,-57.022,107.983)
OP1: (18.454,-72.582,108.552)
OP2: (17.881,-70.772,110.275)
C3': (22.534,-69.589,108.268)
C1': (22.005,-67.385,107.627)
C5': (20.365,-70.574,107.339)
O6: (21.250,-63.536,112.176)
O4': (20.999,-68.258,107.159)
C8: (20.607,-67.063,109.743)
C2: (23.241,-63.602,109.297)
C6: (21.685,-63.992,111.129)
C5: (21.370,-65.183,110.431)
C4: (22.015,-65.450,109.247)
P: (18.353,-71.146,108.914)
C4': (21.502,-69.614,107.165)
C2': (23.215,-68.261,108.017)
O2': (24.102,-68.352,106.905)
N1: (22.637,-63.253,110.478)
N2: (24.164,-62.723,108.856)
N3: (22.954,-64.709,108.620)
N7: (20.479,-66.207,110.724)
N9: (21.502,-66.645,108.798)
O5': (19.734,-70.424,108.607)
O3': (23.407,-70.688,108.233)
OP2: (17.881,-70.772,110.275)
C3': (22.534,-69.589,108.268)
C1': (22.005,-67.385,107.627)
C5': (20.365,-70.574,107.339)
O6: (21.250,-63.536,112.176)
O4': (20.999,-68.258,107.159)
C8: (20.607,-67.063,109.743)
C2: (23.241,-63.602,109.297)
C6: (21.685,-63.992,111.129)
C5: (21.370,-65.183,110.431)
C4: (22.015,-65.450,109.247)
P: (18.353,-71.146,108.914)
C4': (21.502,-69.614,107.165)
C2': (23.215,-68.261,108.017)
O2': (24.102,-68.352,106.905)
N1: (22.637,-63.253,110.478)
N2: (24.164,-62.723,108.856)
N3: (22.954,-64.709,108.620)
N7: (20.479,-66.207,110.724)
N9: (21.502,-66.645,108.798)
O5': (19.734,-70.424,108.607)
O3': (23.407,-70.688,108.233)
Image (generated by PyMOL):