Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12554:12555
Extra
PDB:
ATOM 1 O3' A A2553 29.713 -36.745 79.846 1.00 38.21 O
ATOM 2 P A A2554 28.527 -37.733 80.303 1.00 42.79 P
ATOM 3 OP1 A A2554 29.128 -38.806 81.154 1.00 43.01 O
ATOM 4 OP2 A A2554 27.781 -38.114 79.077 1.00 42.80 O
ATOM 5 O5' A A2554 27.640 -36.784 81.183 1.00 42.73 O
ATOM 6 C5' A A2554 26.300 -37.088 81.454 1.00 42.87 C
ATOM 7 C4' A A2554 25.610 -35.914 82.057 1.00 42.77 C
ATOM 8 O4' A A2554 25.987 -35.802 83.450 1.00 42.85 O
ATOM 9 C3' A A2554 25.925 -34.561 81.415 1.00 42.49 C
ATOM 10 O3' A A2554 24.742 -33.806 81.346 1.00 42.44 O
ATOM 11 C2' A A2554 26.828 -33.903 82.435 1.00 42.43 C
ATOM 12 O2' A A2554 26.782 -32.502 82.413 1.00 42.23 O
ATOM 13 C1' A A2554 26.268 -34.457 83.727 1.00 42.65 C
ATOM 14 N9 A A2554 27.177 -34.392 84.860 1.00 42.71 N
ATOM 15 C8 A A2554 28.536 -34.445 84.890 1.00 42.66 C
ATOM 16 N7 A A2554 29.069 -34.379 86.107 1.00 42.76 N
ATOM 17 C5 A A2554 27.957 -34.266 86.931 1.00 42.88 C
ATOM 18 C6 A A2554 27.800 -34.137 88.335 1.00 43.04 C
ATOM 19 N6 A A2554 28.794 -34.097 89.209 1.00 43.11 N
ATOM 20 N1 A A2554 26.567 -34.047 88.845 1.00 43.15 N
ATOM 21 C2 A A2554 25.537 -34.091 87.987 1.00 43.10 C
ATOM 22 N3 A A2554 25.540 -34.183 86.653 1.00 42.96 N
ATOM 23 C4 A A2554 26.799 -34.262 86.166 1.00 42.85 C
ATOM 24 P A A2555 24.345 -32.994 80.025 1.00 48.46 P
ATOM 25 OP1 A A2555 23.351 -33.827 79.301 1.00 48.60 O
ATOM 26 OP2 A A2555 25.596 -32.582 79.312 1.00 48.28 O
ATOM 27 O5' A A2555 23.642 -31.732 80.641 1.00 48.38 O
TER
ATOM 1 O3' A B2554 24.742 -33.806 81.346 1.00 42.44 O
ATOM 2 P A B2555 24.345 -32.994 80.025 1.00 48.46 P
ATOM 3 OP1 A B2555 23.351 -33.827 79.301 1.00 48.60 O
ATOM 4 OP2 A B2555 25.596 -32.582 79.312 1.00 48.28 O
ATOM 5 O5' A B2555 23.642 -31.732 80.641 1.00 48.38 O
ATOM 6 C5' A B2555 22.352 -31.818 81.209 1.00 48.52 C
ATOM 7 C4' A B2555 21.948 -30.500 81.775 1.00 48.43 C
ATOM 8 O4' A B2555 22.878 -30.184 82.845 1.00 48.41 O
ATOM 9 C3' A B2555 22.021 -29.334 80.777 1.00 48.21 C
ATOM 10 O3' A B2555 20.951 -28.411 80.992 1.00 48.20 O
ATOM 11 C2' A B2555 23.357 -28.684 81.106 1.00 48.06 C
ATOM 12 O2' A B2555 23.437 -27.318 80.805 1.00 47.88 O
ATOM 13 C1' A B2555 23.465 -28.924 82.603 1.00 48.20 C
ATOM 14 N9 A B2555 24.834 -28.927 83.075 1.00 48.16 N
ATOM 15 C8 A B2555 25.894 -29.493 82.456 1.00 48.11 C
ATOM 16 N7 A B2555 27.025 -29.286 83.077 1.00 48.08 N
ATOM 17 C5 A B2555 26.671 -28.505 84.151 1.00 48.11 C
ATOM 18 C6 A B2555 27.425 -27.930 85.169 1.00 48.11 C
ATOM 19 N6 A B2555 28.745 -28.080 85.216 1.00 48.08 N
ATOM 20 N1 A B2555 26.782 -27.192 86.106 1.00 48.17 N
ATOM 21 C2 A B2555 25.465 -27.043 85.991 1.00 48.21 C
ATOM 22 N3 A B2555 24.634 -27.523 85.071 1.00 48.21 N
ATOM 23 C4 A B2555 25.314 -28.251 84.158 1.00 48.16 C
ATOM 24 P A B2556 19.533 -28.661 80.252 1.00 32.99 P
ATOM 25 OP1 A B2556 18.887 -29.831 80.918 1.00 33.23 O
ATOM 26 OP2 A B2556 19.797 -28.723 78.820 1.00 32.88 O
ATOM 27 O5' A B2556 18.675 -27.374 80.578 1.00 32.96 O
TER
ATOM 2 P A A2554 28.527 -37.733 80.303 1.00 42.79 P
ATOM 3 OP1 A A2554 29.128 -38.806 81.154 1.00 43.01 O
ATOM 4 OP2 A A2554 27.781 -38.114 79.077 1.00 42.80 O
ATOM 5 O5' A A2554 27.640 -36.784 81.183 1.00 42.73 O
ATOM 6 C5' A A2554 26.300 -37.088 81.454 1.00 42.87 C
ATOM 7 C4' A A2554 25.610 -35.914 82.057 1.00 42.77 C
ATOM 8 O4' A A2554 25.987 -35.802 83.450 1.00 42.85 O
ATOM 9 C3' A A2554 25.925 -34.561 81.415 1.00 42.49 C
ATOM 10 O3' A A2554 24.742 -33.806 81.346 1.00 42.44 O
ATOM 11 C2' A A2554 26.828 -33.903 82.435 1.00 42.43 C
ATOM 12 O2' A A2554 26.782 -32.502 82.413 1.00 42.23 O
ATOM 13 C1' A A2554 26.268 -34.457 83.727 1.00 42.65 C
ATOM 14 N9 A A2554 27.177 -34.392 84.860 1.00 42.71 N
ATOM 15 C8 A A2554 28.536 -34.445 84.890 1.00 42.66 C
ATOM 16 N7 A A2554 29.069 -34.379 86.107 1.00 42.76 N
ATOM 17 C5 A A2554 27.957 -34.266 86.931 1.00 42.88 C
ATOM 18 C6 A A2554 27.800 -34.137 88.335 1.00 43.04 C
ATOM 19 N6 A A2554 28.794 -34.097 89.209 1.00 43.11 N
ATOM 20 N1 A A2554 26.567 -34.047 88.845 1.00 43.15 N
ATOM 21 C2 A A2554 25.537 -34.091 87.987 1.00 43.10 C
ATOM 22 N3 A A2554 25.540 -34.183 86.653 1.00 42.96 N
ATOM 23 C4 A A2554 26.799 -34.262 86.166 1.00 42.85 C
ATOM 24 P A A2555 24.345 -32.994 80.025 1.00 48.46 P
ATOM 25 OP1 A A2555 23.351 -33.827 79.301 1.00 48.60 O
ATOM 26 OP2 A A2555 25.596 -32.582 79.312 1.00 48.28 O
ATOM 27 O5' A A2555 23.642 -31.732 80.641 1.00 48.38 O
TER
ATOM 1 O3' A B2554 24.742 -33.806 81.346 1.00 42.44 O
ATOM 2 P A B2555 24.345 -32.994 80.025 1.00 48.46 P
ATOM 3 OP1 A B2555 23.351 -33.827 79.301 1.00 48.60 O
ATOM 4 OP2 A B2555 25.596 -32.582 79.312 1.00 48.28 O
ATOM 5 O5' A B2555 23.642 -31.732 80.641 1.00 48.38 O
ATOM 6 C5' A B2555 22.352 -31.818 81.209 1.00 48.52 C
ATOM 7 C4' A B2555 21.948 -30.500 81.775 1.00 48.43 C
ATOM 8 O4' A B2555 22.878 -30.184 82.845 1.00 48.41 O
ATOM 9 C3' A B2555 22.021 -29.334 80.777 1.00 48.21 C
ATOM 10 O3' A B2555 20.951 -28.411 80.992 1.00 48.20 O
ATOM 11 C2' A B2555 23.357 -28.684 81.106 1.00 48.06 C
ATOM 12 O2' A B2555 23.437 -27.318 80.805 1.00 47.88 O
ATOM 13 C1' A B2555 23.465 -28.924 82.603 1.00 48.20 C
ATOM 14 N9 A B2555 24.834 -28.927 83.075 1.00 48.16 N
ATOM 15 C8 A B2555 25.894 -29.493 82.456 1.00 48.11 C
ATOM 16 N7 A B2555 27.025 -29.286 83.077 1.00 48.08 N
ATOM 17 C5 A B2555 26.671 -28.505 84.151 1.00 48.11 C
ATOM 18 C6 A B2555 27.425 -27.930 85.169 1.00 48.11 C
ATOM 19 N6 A B2555 28.745 -28.080 85.216 1.00 48.08 N
ATOM 20 N1 A B2555 26.782 -27.192 86.106 1.00 48.17 N
ATOM 21 C2 A B2555 25.465 -27.043 85.991 1.00 48.21 C
ATOM 22 N3 A B2555 24.634 -27.523 85.071 1.00 48.21 N
ATOM 23 C4 A B2555 25.314 -28.251 84.158 1.00 48.16 C
ATOM 24 P A B2556 19.533 -28.661 80.252 1.00 32.99 P
ATOM 25 OP1 A B2556 18.887 -29.831 80.918 1.00 33.23 O
ATOM 26 OP2 A B2556 19.797 -28.723 78.820 1.00 32.88 O
ATOM 27 O5' A B2556 18.675 -27.374 80.578 1.00 32.96 O
TER
Atoms:
OP1: (29.128,-38.806,81.154)
OP2: (27.781,-38.114,79.077)
C3': (25.925,-34.561,81.415)
C1': (26.268,-34.457,83.727)
C5': (26.300,-37.088,81.454)
O4': (25.987,-35.802,83.450)
C8: (28.536,-34.445,84.890)
O2': (26.782,-32.502,82.413)
C6: (27.800,-34.137,88.335)
C5: (27.957,-34.266,86.931)
C4: (26.799,-34.262,86.166)
P: (28.527,-37.733,80.303)
C4': (25.610,-35.914,82.057)
C2': (26.828,-33.903,82.435)
C2: (25.537,-34.091,87.987)
N1: (26.567,-34.047,88.845)
N3: (25.540,-34.183,86.653)
N6: (28.794,-34.097,89.209)
N7: (29.069,-34.379,86.107)
N9: (27.177,-34.392,84.860)
O5': (27.640,-36.784,81.183)
O3': (24.742,-33.806,81.346)
OP2: (27.781,-38.114,79.077)
C3': (25.925,-34.561,81.415)
C1': (26.268,-34.457,83.727)
C5': (26.300,-37.088,81.454)
O4': (25.987,-35.802,83.450)
C8: (28.536,-34.445,84.890)
O2': (26.782,-32.502,82.413)
C6: (27.800,-34.137,88.335)
C5: (27.957,-34.266,86.931)
C4: (26.799,-34.262,86.166)
P: (28.527,-37.733,80.303)
C4': (25.610,-35.914,82.057)
C2': (26.828,-33.903,82.435)
C2: (25.537,-34.091,87.987)
N1: (26.567,-34.047,88.845)
N3: (25.540,-34.183,86.653)
N6: (28.794,-34.097,89.209)
N7: (29.069,-34.379,86.107)
N9: (27.177,-34.392,84.860)
O5': (27.640,-36.784,81.183)
O3': (24.742,-33.806,81.346)
OP1: (23.351,-33.827,79.301)
OP2: (25.596,-32.582,79.312)
C3': (22.021,-29.334,80.777)
C1': (23.465,-28.924,82.603)
C5': (22.352,-31.818,81.209)
O4': (22.878,-30.184,82.845)
C8: (25.894,-29.493,82.456)
O2': (23.437,-27.318,80.805)
C6: (27.425,-27.930,85.169)
C5: (26.671,-28.505,84.151)
C4: (25.314,-28.251,84.158)
P: (24.345,-32.994,80.025)
C4': (21.948,-30.500,81.775)
C2': (23.357,-28.684,81.106)
C2: (25.465,-27.043,85.991)
N1: (26.782,-27.192,86.106)
N3: (24.634,-27.523,85.071)
N6: (28.745,-28.080,85.216)
N7: (27.025,-29.286,83.077)
N9: (24.834,-28.927,83.075)
O5': (23.642,-31.732,80.641)
O3': (20.951,-28.411,80.992)
OP2: (25.596,-32.582,79.312)
C3': (22.021,-29.334,80.777)
C1': (23.465,-28.924,82.603)
C5': (22.352,-31.818,81.209)
O4': (22.878,-30.184,82.845)
C8: (25.894,-29.493,82.456)
O2': (23.437,-27.318,80.805)
C6: (27.425,-27.930,85.169)
C5: (26.671,-28.505,84.151)
C4: (25.314,-28.251,84.158)
P: (24.345,-32.994,80.025)
C4': (21.948,-30.500,81.775)
C2': (23.357,-28.684,81.106)
C2: (25.465,-27.043,85.991)
N1: (26.782,-27.192,86.106)
N3: (24.634,-27.523,85.071)
N6: (28.745,-28.080,85.216)
N7: (27.025,-29.286,83.077)
N9: (24.834,-28.927,83.075)
O5': (23.642,-31.732,80.641)
O3': (20.951,-28.411,80.992)
Image (generated by PyMOL):