ClaRNA

Doublet info:

Details

Nucleotide types: GG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJ9:0939:0940

Extra

PDB:
ATOM 1 O3' A A 938 52.208 58.802 96.328 1.00 47.25 O
ATOM 2 P G A 939 52.886 58.740 97.778 1.00 49.47 P
ATOM 3 OP1 G A 939 54.348 58.477 97.618 1.00 49.30 O
ATOM 4 OP2 G A 939 52.062 57.854 98.642 1.00 46.10 O
ATOM 5 O5' G A 939 52.714 60.226 98.307 1.00 49.35 O
ATOM 6 C5' G A 939 53.244 61.321 97.555 1.00 50.18 C
ATOM 7 C4' G A 939 53.155 62.584 98.356 1.00 49.38 C
ATOM 8 O4' G A 939 51.752 62.905 98.544 1.00 50.60 O
ATOM 9 C3' G A 939 53.777 62.520 99.748 1.00 49.75 C
ATOM 10 O3' G A 939 54.464 63.711 100.035 1.00 50.31 O
ATOM 11 C2' G A 939 52.572 62.397 100.671 1.00 49.46 C
ATOM 12 O2' G A 939 52.772 62.977 101.945 1.00 48.65 O
ATOM 13 C1' G A 939 51.508 63.172 99.905 1.00 49.92 C
ATOM 14 N9 G A 939 50.174 62.691 100.246 1.00 51.60 N
ATOM 15 C8 G A 939 49.751 61.383 100.291 1.00 50.97 C
ATOM 16 N7 G A 939 48.538 61.255 100.754 1.00 52.02 N
ATOM 17 C5 G A 939 48.124 62.556 101.003 1.00 52.13 C
ATOM 18 C6 G A 939 46.918 63.038 101.542 1.00 52.45 C
ATOM 19 O6 G A 939 45.949 62.391 101.955 1.00 54.41 O
ATOM 20 N1 G A 939 46.904 64.426 101.602 1.00 51.92 N
ATOM 21 C2 G A 939 47.931 65.242 101.208 1.00 50.85 C
ATOM 22 N2 G A 939 47.720 66.555 101.330 1.00 51.20 N
ATOM 23 N3 G A 939 49.076 64.803 100.728 1.00 50.02 N
ATOM 24 C4 G A 939 49.106 63.458 100.655 1.00 51.59 C
ATOM 25 P G A 940 56.043 63.664 100.261 1.00 50.19 P
ATOM 26 OP1 G A 940 56.678 64.023 98.963 1.00 50.18 O
ATOM 27 OP2 G A 940 56.373 62.371 100.915 1.00 48.36 O
ATOM 28 O5' G A 940 56.292 64.859 101.275 1.00 50.84 O
TER

ATOM 1 O3' G B 939 54.464 63.711 100.035 1.00 50.31 O
ATOM 2 P G B 940 56.043 63.664 100.261 1.00 50.19 P
ATOM 3 OP1 G B 940 56.678 64.023 98.963 1.00 50.18 O
ATOM 4 OP2 G B 940 56.373 62.371 100.915 1.00 48.36 O
ATOM 5 O5' G B 940 56.292 64.859 101.275 1.00 50.84 O
ATOM 6 C5' G B 940 57.167 64.708 102.386 1.00 53.29 C
ATOM 7 C4' G B 940 56.474 65.152 103.644 1.00 53.52 C
ATOM 8 O4' G B 940 55.218 64.437 103.771 1.00 54.16 O
ATOM 9 C3' G B 940 57.250 64.880 104.922 1.00 53.61 C
ATOM 10 O3' G B 940 56.911 65.875 105.871 1.00 52.70 O
ATOM 11 C2' G B 940 56.688 63.536 105.359 1.00 54.47 C
ATOM 12 O2' G B 940 56.822 63.327 106.745 1.00 57.48 O
ATOM 13 C1' G B 940 55.220 63.689 104.969 1.00 55.71 C
ATOM 14 N9 G B 940 54.546 62.421 104.715 1.00 57.33 N
ATOM 15 C8 G B 940 54.921 61.461 103.809 1.00 58.74 C
ATOM 16 N7 G B 940 54.138 60.419 103.815 1.00 60.37 N
ATOM 17 C5 G B 940 53.185 60.707 104.784 1.00 60.32 C
ATOM 18 C6 G B 940 52.076 59.939 105.246 1.00 60.83 C
ATOM 19 O6 G B 940 51.718 58.803 104.895 1.00 61.96 O
ATOM 20 N1 G B 940 51.361 60.617 106.225 1.00 60.30 N
ATOM 21 C2 G B 940 51.673 61.857 106.710 1.00 58.84 C
ATOM 22 N2 G B 940 50.859 62.331 107.654 1.00 58.58 N
ATOM 23 N3 G B 940 52.706 62.577 106.301 1.00 58.61 N
ATOM 24 C4 G B 940 53.414 61.944 105.341 1.00 58.66 C
ATOM 25 P U B 941 57.718 67.261 105.893 1.00 53.09 P
ATOM 26 OP1 U B 941 57.946 67.682 104.486 1.00 50.92 O
ATOM 27 OP2 U B 941 58.871 67.142 106.820 1.00 52.61 O
ATOM 28 O5' U B 941 56.686 68.273 106.547 1.00 49.34 O
TER

Atoms:
OP1: (54.348,58.477,97.618)
OP2: (52.062,57.854,98.642)
C3': (53.777,62.520,99.748)
C1': (51.508,63.172,99.905)
C5': (53.244,61.321,97.555)
O6: (45.949,62.391,101.955)
O4': (51.752,62.905,98.544)
C8: (49.751,61.383,100.291)
C2: (47.931,65.242,101.208)
C6: (46.918,63.038,101.542)
C5: (48.124,62.556,101.003)
C4: (49.106,63.458,100.655)
P: (52.886,58.740,97.778)
C4': (53.155,62.584,98.356)
C2': (52.572,62.397,100.671)
O2': (52.772,62.977,101.945)
N1: (46.904,64.426,101.602)
N2: (47.720,66.555,101.330)
N3: (49.076,64.803,100.728)
N7: (48.538,61.255,100.754)
N9: (50.174,62.691,100.246)
O5': (52.714,60.226,98.307)
O3': (54.464,63.711,100.035)
OP1: (56.678,64.023,98.963)
OP2: (56.373,62.371,100.915)
C3': (57.250,64.880,104.922)
C1': (55.220,63.689,104.969)
C5': (57.167,64.708,102.386)
O6: (51.718,58.803,104.895)
O4': (55.218,64.437,103.771)
C8: (54.921,61.461,103.809)
C2: (51.673,61.857,106.710)
C6: (52.076,59.939,105.246)
C5: (53.185,60.707,104.784)
C4: (53.414,61.944,105.341)
P: (56.043,63.664,100.261)
C4': (56.474,65.152,103.644)
C2': (56.688,63.536,105.359)
O2': (56.822,63.327,106.745)
N1: (51.361,60.617,106.225)
N2: (50.859,62.331,107.654)
N3: (52.706,62.577,106.301)
N7: (54.138,60.419,103.815)
N9: (54.546,62.421,104.715)
O5': (56.292,64.859,101.275)
O3': (56.911,65.875,105.871)
Image (generated by PyMOL):
PyMOL image
show in jmol