Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:013:0506
Extra
PDB:
ATOM 1 O3' U A 12 34.304 148.456 73.884 1.00 33.22 O
ATOM 2 P G A 13 34.777 148.090 72.395 1.00 32.68 P
ATOM 3 OP1 G A 13 36.161 148.587 72.231 1.00 33.61 O
ATOM 4 OP2 G A 13 33.716 148.555 71.467 1.00 36.49 O
ATOM 5 O5' G A 13 34.813 146.498 72.354 1.00 34.80 O
ATOM 6 C5' G A 13 35.762 145.739 73.130 1.00 32.21 C
ATOM 7 C4' G A 13 35.410 144.270 73.069 1.00 34.75 C
ATOM 8 O4' G A 13 34.123 144.060 73.710 1.00 35.91 O
ATOM 9 C3' G A 13 35.240 143.710 71.664 1.00 33.23 C
ATOM 10 O3' G A 13 36.494 143.293 71.139 1.00 31.43 O
ATOM 11 C2' G A 13 34.287 142.543 71.884 1.00 33.92 C
ATOM 12 O2' G A 13 34.956 141.417 72.393 1.00 33.76 O
ATOM 13 C1' G A 13 33.373 143.098 72.982 1.00 34.95 C
ATOM 14 N9 G A 13 32.169 143.761 72.492 1.00 36.41 N
ATOM 15 C8 G A 13 32.081 145.036 71.988 1.00 35.16 C
ATOM 16 N7 G A 13 30.865 145.376 71.665 1.00 36.22 N
ATOM 17 C5 G A 13 30.103 144.257 71.963 1.00 36.15 C
ATOM 18 C6 G A 13 28.711 144.034 71.827 1.00 35.91 C
ATOM 19 O6 G A 13 27.845 144.812 71.417 1.00 36.97 O
ATOM 20 N1 G A 13 28.355 142.753 72.233 1.00 35.74 N
ATOM 21 C2 G A 13 29.223 141.812 72.716 1.00 35.46 C
ATOM 22 N2 G A 13 28.686 140.637 73.053 1.00 35.82 N
ATOM 23 N3 G A 13 30.524 142.009 72.858 1.00 37.28 N
ATOM 24 C4 G A 13 30.893 143.245 72.463 1.00 37.20 C
ATOM 25 P G A 14 36.840 143.541 69.587 1.00 33.26 P
ATOM 26 OP1 G A 14 38.312 143.507 69.420 1.00 31.73 O
ATOM 27 OP2 G A 14 36.085 144.740 69.143 1.00 34.96 O
ATOM 28 O5' G A 14 36.224 142.280 68.839 1.00 30.04 O
TER
ATOM 1 O3' U B 505 21.028 141.478 64.772 1.00 29.91 O
ATOM 2 P G B 506 20.795 142.196 66.188 1.00 34.01 P
ATOM 3 OP1 G B 506 19.663 141.477 66.841 1.00 31.83 O
ATOM 4 OP2 G B 506 20.727 143.672 66.003 1.00 31.57 O
ATOM 5 O5' G B 506 22.118 141.877 67.010 1.00 34.18 O
ATOM 6 C5' G B 506 22.601 140.533 67.120 1.00 34.94 C
ATOM 7 C4' G B 506 24.006 140.531 67.659 1.00 35.17 C
ATOM 8 O4' G B 506 24.916 141.116 66.673 1.00 35.53 O
ATOM 9 C3' G B 506 24.199 141.340 68.942 1.00 33.63 C
ATOM 10 O3' G B 506 25.050 140.617 69.812 1.00 33.64 O
ATOM 11 C2' G B 506 24.927 142.585 68.445 1.00 33.00 C
ATOM 12 O2' G B 506 25.758 143.209 69.398 1.00 32.95 O
ATOM 13 C1' G B 506 25.789 141.981 67.347 1.00 34.00 C
ATOM 14 N9 G B 506 26.362 142.964 66.437 1.00 34.16 N
ATOM 15 C8 G B 506 25.797 144.138 65.994 1.00 34.27 C
ATOM 16 N7 G B 506 26.637 144.893 65.340 1.00 34.29 N
ATOM 17 C5 G B 506 27.812 144.154 65.315 1.00 37.41 C
ATOM 18 C6 G B 506 29.089 144.467 64.775 1.00 38.22 C
ATOM 19 O6 G B 506 29.451 145.499 64.202 1.00 40.64 O
ATOM 20 N1 G B 506 29.995 143.428 64.968 1.00 37.93 N
ATOM 21 C2 G B 506 29.713 142.240 65.599 1.00 38.11 C
ATOM 22 N2 G B 506 30.717 141.354 65.680 1.00 37.73 N
ATOM 23 N3 G B 506 28.532 141.941 66.113 1.00 37.35 N
ATOM 24 C4 G B 506 27.638 142.939 65.943 1.00 36.63 C
ATOM 25 P A B 507 24.806 140.678 71.394 1.00 34.40 P
ATOM 26 OP1 A B 507 23.375 140.974 71.658 1.00 32.93 O
ATOM 27 OP2 A B 507 25.855 141.558 71.982 1.00 31.84 O
ATOM 28 O5' A B 507 25.095 139.183 71.849 1.00 34.19 O
TER
ATOM 2 P G A 13 34.777 148.090 72.395 1.00 32.68 P
ATOM 3 OP1 G A 13 36.161 148.587 72.231 1.00 33.61 O
ATOM 4 OP2 G A 13 33.716 148.555 71.467 1.00 36.49 O
ATOM 5 O5' G A 13 34.813 146.498 72.354 1.00 34.80 O
ATOM 6 C5' G A 13 35.762 145.739 73.130 1.00 32.21 C
ATOM 7 C4' G A 13 35.410 144.270 73.069 1.00 34.75 C
ATOM 8 O4' G A 13 34.123 144.060 73.710 1.00 35.91 O
ATOM 9 C3' G A 13 35.240 143.710 71.664 1.00 33.23 C
ATOM 10 O3' G A 13 36.494 143.293 71.139 1.00 31.43 O
ATOM 11 C2' G A 13 34.287 142.543 71.884 1.00 33.92 C
ATOM 12 O2' G A 13 34.956 141.417 72.393 1.00 33.76 O
ATOM 13 C1' G A 13 33.373 143.098 72.982 1.00 34.95 C
ATOM 14 N9 G A 13 32.169 143.761 72.492 1.00 36.41 N
ATOM 15 C8 G A 13 32.081 145.036 71.988 1.00 35.16 C
ATOM 16 N7 G A 13 30.865 145.376 71.665 1.00 36.22 N
ATOM 17 C5 G A 13 30.103 144.257 71.963 1.00 36.15 C
ATOM 18 C6 G A 13 28.711 144.034 71.827 1.00 35.91 C
ATOM 19 O6 G A 13 27.845 144.812 71.417 1.00 36.97 O
ATOM 20 N1 G A 13 28.355 142.753 72.233 1.00 35.74 N
ATOM 21 C2 G A 13 29.223 141.812 72.716 1.00 35.46 C
ATOM 22 N2 G A 13 28.686 140.637 73.053 1.00 35.82 N
ATOM 23 N3 G A 13 30.524 142.009 72.858 1.00 37.28 N
ATOM 24 C4 G A 13 30.893 143.245 72.463 1.00 37.20 C
ATOM 25 P G A 14 36.840 143.541 69.587 1.00 33.26 P
ATOM 26 OP1 G A 14 38.312 143.507 69.420 1.00 31.73 O
ATOM 27 OP2 G A 14 36.085 144.740 69.143 1.00 34.96 O
ATOM 28 O5' G A 14 36.224 142.280 68.839 1.00 30.04 O
TER
ATOM 1 O3' U B 505 21.028 141.478 64.772 1.00 29.91 O
ATOM 2 P G B 506 20.795 142.196 66.188 1.00 34.01 P
ATOM 3 OP1 G B 506 19.663 141.477 66.841 1.00 31.83 O
ATOM 4 OP2 G B 506 20.727 143.672 66.003 1.00 31.57 O
ATOM 5 O5' G B 506 22.118 141.877 67.010 1.00 34.18 O
ATOM 6 C5' G B 506 22.601 140.533 67.120 1.00 34.94 C
ATOM 7 C4' G B 506 24.006 140.531 67.659 1.00 35.17 C
ATOM 8 O4' G B 506 24.916 141.116 66.673 1.00 35.53 O
ATOM 9 C3' G B 506 24.199 141.340 68.942 1.00 33.63 C
ATOM 10 O3' G B 506 25.050 140.617 69.812 1.00 33.64 O
ATOM 11 C2' G B 506 24.927 142.585 68.445 1.00 33.00 C
ATOM 12 O2' G B 506 25.758 143.209 69.398 1.00 32.95 O
ATOM 13 C1' G B 506 25.789 141.981 67.347 1.00 34.00 C
ATOM 14 N9 G B 506 26.362 142.964 66.437 1.00 34.16 N
ATOM 15 C8 G B 506 25.797 144.138 65.994 1.00 34.27 C
ATOM 16 N7 G B 506 26.637 144.893 65.340 1.00 34.29 N
ATOM 17 C5 G B 506 27.812 144.154 65.315 1.00 37.41 C
ATOM 18 C6 G B 506 29.089 144.467 64.775 1.00 38.22 C
ATOM 19 O6 G B 506 29.451 145.499 64.202 1.00 40.64 O
ATOM 20 N1 G B 506 29.995 143.428 64.968 1.00 37.93 N
ATOM 21 C2 G B 506 29.713 142.240 65.599 1.00 38.11 C
ATOM 22 N2 G B 506 30.717 141.354 65.680 1.00 37.73 N
ATOM 23 N3 G B 506 28.532 141.941 66.113 1.00 37.35 N
ATOM 24 C4 G B 506 27.638 142.939 65.943 1.00 36.63 C
ATOM 25 P A B 507 24.806 140.678 71.394 1.00 34.40 P
ATOM 26 OP1 A B 507 23.375 140.974 71.658 1.00 32.93 O
ATOM 27 OP2 A B 507 25.855 141.558 71.982 1.00 31.84 O
ATOM 28 O5' A B 507 25.095 139.183 71.849 1.00 34.19 O
TER
Atoms:
OP1: (36.161,148.587,72.231)
OP2: (33.716,148.555,71.467)
C3': (35.240,143.710,71.664)
C1': (33.373,143.098,72.982)
C5': (35.762,145.739,73.130)
O6: (27.845,144.812,71.417)
O4': (34.123,144.060,73.710)
C8: (32.081,145.036,71.988)
C2: (29.223,141.812,72.716)
C6: (28.711,144.034,71.827)
C5: (30.103,144.257,71.963)
C4: (30.893,143.245,72.463)
P: (34.777,148.090,72.395)
C4': (35.410,144.270,73.069)
C2': (34.287,142.543,71.884)
O2': (34.956,141.417,72.393)
N1: (28.355,142.753,72.233)
N2: (28.686,140.637,73.053)
N3: (30.524,142.009,72.858)
N7: (30.865,145.376,71.665)
N9: (32.169,143.761,72.492)
O5': (34.813,146.498,72.354)
O3': (36.494,143.293,71.139)
OP2: (33.716,148.555,71.467)
C3': (35.240,143.710,71.664)
C1': (33.373,143.098,72.982)
C5': (35.762,145.739,73.130)
O6: (27.845,144.812,71.417)
O4': (34.123,144.060,73.710)
C8: (32.081,145.036,71.988)
C2: (29.223,141.812,72.716)
C6: (28.711,144.034,71.827)
C5: (30.103,144.257,71.963)
C4: (30.893,143.245,72.463)
P: (34.777,148.090,72.395)
C4': (35.410,144.270,73.069)
C2': (34.287,142.543,71.884)
O2': (34.956,141.417,72.393)
N1: (28.355,142.753,72.233)
N2: (28.686,140.637,73.053)
N3: (30.524,142.009,72.858)
N7: (30.865,145.376,71.665)
N9: (32.169,143.761,72.492)
O5': (34.813,146.498,72.354)
O3': (36.494,143.293,71.139)
OP1: (19.663,141.477,66.841)
OP2: (20.727,143.672,66.003)
C3': (24.199,141.340,68.942)
C1': (25.789,141.981,67.347)
C5': (22.601,140.533,67.120)
O6: (29.451,145.499,64.202)
O4': (24.916,141.116,66.673)
C8: (25.797,144.138,65.994)
C2: (29.713,142.240,65.599)
C6: (29.089,144.467,64.775)
C5: (27.812,144.154,65.315)
C4: (27.638,142.939,65.943)
P: (20.795,142.196,66.188)
C4': (24.006,140.531,67.659)
C2': (24.927,142.585,68.445)
O2': (25.758,143.209,69.398)
N1: (29.995,143.428,64.968)
N2: (30.717,141.354,65.680)
N3: (28.532,141.941,66.113)
N7: (26.637,144.893,65.340)
N9: (26.362,142.964,66.437)
O5': (22.118,141.877,67.010)
O3': (25.050,140.617,69.812)
OP2: (20.727,143.672,66.003)
C3': (24.199,141.340,68.942)
C1': (25.789,141.981,67.347)
C5': (22.601,140.533,67.120)
O6: (29.451,145.499,64.202)
O4': (24.916,141.116,66.673)
C8: (25.797,144.138,65.994)
C2: (29.713,142.240,65.599)
C6: (29.089,144.467,64.775)
C5: (27.812,144.154,65.315)
C4: (27.638,142.939,65.943)
P: (20.795,142.196,66.188)
C4': (24.006,140.531,67.659)
C2': (24.927,142.585,68.445)
O2': (25.758,143.209,69.398)
N1: (29.995,143.428,64.968)
N2: (30.717,141.354,65.680)
N3: (28.532,141.941,66.113)
N7: (26.637,144.893,65.340)
N9: (26.362,142.964,66.437)
O5': (22.118,141.877,67.010)
O3': (25.050,140.617,69.812)
Image (generated by PyMOL):