Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11252:11253
Extra
PDB:
ATOM 1 O3' G A1251 37.605 13.422 33.137 1.00 36.09 O
ATOM 2 P A A1252 38.562 12.307 32.495 1.00 33.00 P
ATOM 3 OP1 A A1252 38.393 11.057 33.236 1.00 32.71 O
ATOM 4 OP2 A A1252 39.796 12.884 32.487 1.00 33.02 O
ATOM 5 O5' A A1252 38.102 12.141 31.001 1.00 33.32 O
ATOM 6 C5' A A1252 38.661 11.083 30.229 1.00 33.33 C
ATOM 7 C4' A A1252 39.842 11.473 29.336 1.00 33.52 C
ATOM 8 O4' A A1252 40.604 12.578 29.880 1.00 33.49 O
ATOM 9 C3' A A1252 40.849 10.366 29.128 1.00 33.40 C
ATOM 10 O3' A A1252 41.333 10.439 27.794 1.00 33.69 O
ATOM 11 C2' A A1252 41.976 10.705 30.116 1.00 33.17 C
ATOM 12 O2' A A1252 43.222 10.157 29.769 1.00 33.15 O
ATOM 13 C1' A A1252 41.993 12.202 30.024 1.00 33.36 C
ATOM 14 N9 A A1252 42.535 12.919 31.191 1.00 33.18 N
ATOM 15 C8 A A1252 42.130 12.842 32.467 1.00 32.92 C
ATOM 16 N7 A A1252 42.535 13.678 33.350 1.00 32.84 N
ATOM 17 C5 A A1252 43.410 14.410 32.604 1.00 33.06 C
ATOM 18 C6 A A1252 44.262 15.447 32.995 1.00 33.10 C
ATOM 19 N6 A A1252 44.371 15.908 34.243 1.00 32.92 N
ATOM 20 N1 A A1252 45.030 15.951 32.044 1.00 33.34 N
ATOM 21 C2 A A1252 44.957 15.420 30.842 1.00 33.51 C
ATOM 22 N3 A A1252 44.216 14.464 30.354 1.00 33.50 N
ATOM 23 C4 A A1252 43.425 13.971 31.287 1.00 33.27 C
ATOM 24 P U A1253 41.008 9.238 26.763 1.00 44.81 P
ATOM 25 OP1 U A1253 39.952 9.722 25.832 1.00 45.14 O
ATOM 26 OP2 U A1253 40.745 8.003 27.588 1.00 44.51 O
ATOM 27 O5' U A1253 42.386 9.088 25.986 1.00 44.93 O
TER
ATOM 1 O3' A B1252 41.333 10.439 27.794 1.00 33.69 O
ATOM 2 P U B1253 41.008 9.238 26.763 1.00 44.81 P
ATOM 3 OP1 U B1253 39.952 9.722 25.832 1.00 45.14 O
ATOM 4 OP2 U B1253 40.745 8.003 27.588 1.00 44.51 O
ATOM 5 O5' U B1253 42.386 9.088 25.986 1.00 44.93 O
ATOM 6 C5' U B1253 43.346 8.129 26.403 1.00 44.71 C
ATOM 7 C4' U B1253 43.453 7.010 25.413 1.00 44.84 C
ATOM 8 O4' U B1253 43.440 7.542 24.083 1.00 45.23 O
ATOM 9 C3' U B1253 44.714 6.202 25.454 1.00 44.73 C
ATOM 10 O3' U B1253 44.741 5.264 26.518 1.00 44.40 O
ATOM 11 C2' U B1253 44.719 5.578 24.076 1.00 45.03 C
ATOM 12 O2' U B1253 43.819 4.496 24.022 1.00 44.99 O
ATOM 13 C1' U B1253 44.147 6.706 23.235 1.00 45.35 C
ATOM 14 N1 U B1253 45.169 7.506 22.598 1.00 45.56 N
ATOM 15 C2 U B1253 45.869 7.034 21.535 1.00 45.78 C
ATOM 16 O2 U B1253 45.637 5.916 21.155 1.00 45.80 O
ATOM 17 N3 U B1253 46.797 7.889 20.982 1.00 45.99 N
ATOM 18 C4 U B1253 47.049 9.170 21.432 1.00 45.98 C
ATOM 19 O4 U B1253 47.888 9.909 20.928 1.00 46.17 O
ATOM 20 C5 U B1253 46.283 9.586 22.546 1.00 45.74 C
ATOM 21 C6 U B1253 45.374 8.768 23.070 1.00 45.54 C
ATOM 22 P G B1254 46.145 4.743 27.075 1.00 34.89 P
ATOM 23 OP1 G B1254 46.974 4.438 25.903 1.00 35.13 O
ATOM 24 OP2 G B1254 45.875 3.667 28.060 1.00 34.59 O
ATOM 25 O5' G B1254 46.736 6.025 27.835 1.00 34.80 O
TER
ATOM 2 P A A1252 38.562 12.307 32.495 1.00 33.00 P
ATOM 3 OP1 A A1252 38.393 11.057 33.236 1.00 32.71 O
ATOM 4 OP2 A A1252 39.796 12.884 32.487 1.00 33.02 O
ATOM 5 O5' A A1252 38.102 12.141 31.001 1.00 33.32 O
ATOM 6 C5' A A1252 38.661 11.083 30.229 1.00 33.33 C
ATOM 7 C4' A A1252 39.842 11.473 29.336 1.00 33.52 C
ATOM 8 O4' A A1252 40.604 12.578 29.880 1.00 33.49 O
ATOM 9 C3' A A1252 40.849 10.366 29.128 1.00 33.40 C
ATOM 10 O3' A A1252 41.333 10.439 27.794 1.00 33.69 O
ATOM 11 C2' A A1252 41.976 10.705 30.116 1.00 33.17 C
ATOM 12 O2' A A1252 43.222 10.157 29.769 1.00 33.15 O
ATOM 13 C1' A A1252 41.993 12.202 30.024 1.00 33.36 C
ATOM 14 N9 A A1252 42.535 12.919 31.191 1.00 33.18 N
ATOM 15 C8 A A1252 42.130 12.842 32.467 1.00 32.92 C
ATOM 16 N7 A A1252 42.535 13.678 33.350 1.00 32.84 N
ATOM 17 C5 A A1252 43.410 14.410 32.604 1.00 33.06 C
ATOM 18 C6 A A1252 44.262 15.447 32.995 1.00 33.10 C
ATOM 19 N6 A A1252 44.371 15.908 34.243 1.00 32.92 N
ATOM 20 N1 A A1252 45.030 15.951 32.044 1.00 33.34 N
ATOM 21 C2 A A1252 44.957 15.420 30.842 1.00 33.51 C
ATOM 22 N3 A A1252 44.216 14.464 30.354 1.00 33.50 N
ATOM 23 C4 A A1252 43.425 13.971 31.287 1.00 33.27 C
ATOM 24 P U A1253 41.008 9.238 26.763 1.00 44.81 P
ATOM 25 OP1 U A1253 39.952 9.722 25.832 1.00 45.14 O
ATOM 26 OP2 U A1253 40.745 8.003 27.588 1.00 44.51 O
ATOM 27 O5' U A1253 42.386 9.088 25.986 1.00 44.93 O
TER
ATOM 1 O3' A B1252 41.333 10.439 27.794 1.00 33.69 O
ATOM 2 P U B1253 41.008 9.238 26.763 1.00 44.81 P
ATOM 3 OP1 U B1253 39.952 9.722 25.832 1.00 45.14 O
ATOM 4 OP2 U B1253 40.745 8.003 27.588 1.00 44.51 O
ATOM 5 O5' U B1253 42.386 9.088 25.986 1.00 44.93 O
ATOM 6 C5' U B1253 43.346 8.129 26.403 1.00 44.71 C
ATOM 7 C4' U B1253 43.453 7.010 25.413 1.00 44.84 C
ATOM 8 O4' U B1253 43.440 7.542 24.083 1.00 45.23 O
ATOM 9 C3' U B1253 44.714 6.202 25.454 1.00 44.73 C
ATOM 10 O3' U B1253 44.741 5.264 26.518 1.00 44.40 O
ATOM 11 C2' U B1253 44.719 5.578 24.076 1.00 45.03 C
ATOM 12 O2' U B1253 43.819 4.496 24.022 1.00 44.99 O
ATOM 13 C1' U B1253 44.147 6.706 23.235 1.00 45.35 C
ATOM 14 N1 U B1253 45.169 7.506 22.598 1.00 45.56 N
ATOM 15 C2 U B1253 45.869 7.034 21.535 1.00 45.78 C
ATOM 16 O2 U B1253 45.637 5.916 21.155 1.00 45.80 O
ATOM 17 N3 U B1253 46.797 7.889 20.982 1.00 45.99 N
ATOM 18 C4 U B1253 47.049 9.170 21.432 1.00 45.98 C
ATOM 19 O4 U B1253 47.888 9.909 20.928 1.00 46.17 O
ATOM 20 C5 U B1253 46.283 9.586 22.546 1.00 45.74 C
ATOM 21 C6 U B1253 45.374 8.768 23.070 1.00 45.54 C
ATOM 22 P G B1254 46.145 4.743 27.075 1.00 34.89 P
ATOM 23 OP1 G B1254 46.974 4.438 25.903 1.00 35.13 O
ATOM 24 OP2 G B1254 45.875 3.667 28.060 1.00 34.59 O
ATOM 25 O5' G B1254 46.736 6.025 27.835 1.00 34.80 O
TER
Atoms:
OP1: (38.393,11.057,33.236)
OP2: (39.796,12.884,32.487)
C3': (40.849,10.366,29.128)
C1': (41.993,12.202,30.024)
C5': (38.661,11.083,30.229)
O4': (40.604,12.578,29.880)
C8: (42.130,12.842,32.467)
O2': (43.222,10.157,29.769)
C6: (44.262,15.447,32.995)
C5: (43.410,14.410,32.604)
C4: (43.425,13.971,31.287)
P: (38.562,12.307,32.495)
C4': (39.842,11.473,29.336)
C2': (41.976,10.705,30.116)
C2: (44.957,15.420,30.842)
N1: (45.030,15.951,32.044)
N3: (44.216,14.464,30.354)
N6: (44.371,15.908,34.243)
N7: (42.535,13.678,33.350)
N9: (42.535,12.919,31.191)
O5': (38.102,12.141,31.001)
O3': (41.333,10.439,27.794)
OP2: (39.796,12.884,32.487)
C3': (40.849,10.366,29.128)
C1': (41.993,12.202,30.024)
C5': (38.661,11.083,30.229)
O4': (40.604,12.578,29.880)
C8: (42.130,12.842,32.467)
O2': (43.222,10.157,29.769)
C6: (44.262,15.447,32.995)
C5: (43.410,14.410,32.604)
C4: (43.425,13.971,31.287)
P: (38.562,12.307,32.495)
C4': (39.842,11.473,29.336)
C2': (41.976,10.705,30.116)
C2: (44.957,15.420,30.842)
N1: (45.030,15.951,32.044)
N3: (44.216,14.464,30.354)
N6: (44.371,15.908,34.243)
N7: (42.535,13.678,33.350)
N9: (42.535,12.919,31.191)
O5': (38.102,12.141,31.001)
O3': (41.333,10.439,27.794)
C4: (47.049,9.170,21.432)
N3: (46.797,7.889,20.982)
OP1: (39.952,9.722,25.832)
OP2: (40.745,8.003,27.588)
C2: (45.869,7.034,21.535)
C1': (44.147,6.706,23.235)
C3': (44.714,6.202,25.454)
O5': (42.386,9.088,25.986)
O4': (43.440,7.542,24.083)
C5': (43.346,8.129,26.403)
P: (41.008,9.238,26.763)
C4': (43.453,7.010,25.413)
C2': (44.719,5.578,24.076)
O2': (43.819,4.496,24.022)
N1: (45.169,7.506,22.598)
O4: (47.888,9.909,20.928)
O2: (45.637,5.916,21.155)
C6: (45.374,8.768,23.070)
C5: (46.283,9.586,22.546)
O3': (44.741,5.264,26.518)
N3: (46.797,7.889,20.982)
OP1: (39.952,9.722,25.832)
OP2: (40.745,8.003,27.588)
C2: (45.869,7.034,21.535)
C1': (44.147,6.706,23.235)
C3': (44.714,6.202,25.454)
O5': (42.386,9.088,25.986)
O4': (43.440,7.542,24.083)
C5': (43.346,8.129,26.403)
P: (41.008,9.238,26.763)
C4': (43.453,7.010,25.413)
C2': (44.719,5.578,24.076)
O2': (43.819,4.496,24.022)
N1: (45.169,7.506,22.598)
O4: (47.888,9.909,20.928)
O2: (45.637,5.916,21.155)
C6: (45.374,8.768,23.070)
C5: (46.283,9.586,22.546)
O3': (44.741,5.264,26.518)
Image (generated by PyMOL):