Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12871:12872
Extra
PDB:
ATOM 1 O3' C A2870 13.946 17.428 -8.372 1.00 71.89 O
ATOM 2 P U A2871 14.309 18.622 -7.375 1.00 65.49 P
ATOM 3 OP1 U A2871 13.052 19.307 -7.049 1.00 65.69 O
ATOM 4 OP2 U A2871 15.429 19.424 -7.985 1.00 65.69 O
ATOM 5 O5' U A2871 14.823 17.832 -6.111 1.00 64.68 O
ATOM 6 C5' U A2871 15.064 18.473 -4.885 1.00 64.17 C
ATOM 7 C4' U A2871 15.939 17.626 -4.031 1.00 63.49 C
ATOM 8 O4' U A2871 16.577 16.624 -4.857 1.00 63.60 O
ATOM 9 C3' U A2871 17.082 18.346 -3.370 1.00 63.10 C
ATOM 10 O3' U A2871 16.689 18.968 -2.179 1.00 62.74 O
ATOM 11 C2' U A2871 18.101 17.245 -3.173 1.00 62.67 C
ATOM 12 O2' U A2871 17.720 16.436 -2.082 1.00 62.13 O
ATOM 13 C1' U A2871 17.911 16.443 -4.460 1.00 63.16 C
ATOM 14 N1 U A2871 18.778 16.939 -5.550 1.00 63.58 N
ATOM 15 C2 U A2871 20.138 16.703 -5.452 1.00 63.27 C
ATOM 16 O2 U A2871 20.657 16.102 -4.551 1.00 62.69 O
ATOM 17 N3 U A2871 20.932 17.187 -6.424 1.00 63.66 N
ATOM 18 C4 U A2871 20.490 17.888 -7.476 1.00 64.32 C
ATOM 19 O4 U A2871 21.368 18.232 -8.238 1.00 64.59 O
ATOM 20 C5 U A2871 19.068 18.129 -7.560 1.00 64.64 C
ATOM 21 C6 U A2871 18.262 17.657 -6.613 1.00 64.26 C
ATOM 22 P C A2872 16.154 20.462 -2.233 1.00 56.24 P
ATOM 23 OP1 C A2872 14.862 20.516 -1.493 1.00 56.16 O
ATOM 24 OP2 C A2872 16.189 20.864 -3.629 1.00 56.92 O
ATOM 25 O5' C A2872 17.253 21.243 -1.434 1.00 55.83 O
TER
ATOM 1 O3' U B2871 16.689 18.968 -2.179 1.00 62.74 O
ATOM 2 P C B2872 16.154 20.462 -2.233 1.00 56.24 P
ATOM 3 OP1 C B2872 14.862 20.516 -1.493 1.00 56.16 O
ATOM 4 OP2 C B2872 16.189 20.864 -3.629 1.00 56.92 O
ATOM 5 O5' C B2872 17.253 21.243 -1.434 1.00 55.83 O
ATOM 6 C5' C B2872 18.525 21.435 -1.980 1.00 55.88 C
ATOM 7 C4' C B2872 19.518 21.630 -0.898 1.00 55.28 C
ATOM 8 O4' C B2872 19.007 22.584 0.055 1.00 55.13 O
ATOM 9 C3' C B2872 19.834 20.404 -0.074 1.00 54.66 C
ATOM 10 O3' C B2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 11 C2' C B2872 20.356 21.030 1.217 1.00 54.15 C
ATOM 12 O2' C B2872 21.687 21.467 1.046 1.00 54.09 O
ATOM 13 C1' C B2872 19.496 22.286 1.327 1.00 54.47 C
ATOM 14 N1 C B2872 18.359 22.141 2.246 1.00 54.25 N
ATOM 15 C2 C B2872 18.584 21.997 3.621 1.00 53.63 C
ATOM 16 O2 C B2872 19.729 21.937 4.087 1.00 53.25 O
ATOM 17 N3 C B2872 17.534 21.921 4.447 1.00 53.47 N
ATOM 18 C4 C B2872 16.287 22.005 3.946 1.00 53.90 C
ATOM 19 N4 C B2872 15.262 21.919 4.818 1.00 53.72 N
ATOM 20 C5 C B2872 16.059 22.171 2.547 1.00 54.54 C
ATOM 21 C6 C B2872 17.108 22.257 1.743 1.00 54.69 C
ATOM 22 P U B2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 23 OP1 U B2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 24 OP2 U B2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 25 O5' U B2873 21.791 17.661 0.532 1.00 51.50 O
TER
ATOM 2 P U A2871 14.309 18.622 -7.375 1.00 65.49 P
ATOM 3 OP1 U A2871 13.052 19.307 -7.049 1.00 65.69 O
ATOM 4 OP2 U A2871 15.429 19.424 -7.985 1.00 65.69 O
ATOM 5 O5' U A2871 14.823 17.832 -6.111 1.00 64.68 O
ATOM 6 C5' U A2871 15.064 18.473 -4.885 1.00 64.17 C
ATOM 7 C4' U A2871 15.939 17.626 -4.031 1.00 63.49 C
ATOM 8 O4' U A2871 16.577 16.624 -4.857 1.00 63.60 O
ATOM 9 C3' U A2871 17.082 18.346 -3.370 1.00 63.10 C
ATOM 10 O3' U A2871 16.689 18.968 -2.179 1.00 62.74 O
ATOM 11 C2' U A2871 18.101 17.245 -3.173 1.00 62.67 C
ATOM 12 O2' U A2871 17.720 16.436 -2.082 1.00 62.13 O
ATOM 13 C1' U A2871 17.911 16.443 -4.460 1.00 63.16 C
ATOM 14 N1 U A2871 18.778 16.939 -5.550 1.00 63.58 N
ATOM 15 C2 U A2871 20.138 16.703 -5.452 1.00 63.27 C
ATOM 16 O2 U A2871 20.657 16.102 -4.551 1.00 62.69 O
ATOM 17 N3 U A2871 20.932 17.187 -6.424 1.00 63.66 N
ATOM 18 C4 U A2871 20.490 17.888 -7.476 1.00 64.32 C
ATOM 19 O4 U A2871 21.368 18.232 -8.238 1.00 64.59 O
ATOM 20 C5 U A2871 19.068 18.129 -7.560 1.00 64.64 C
ATOM 21 C6 U A2871 18.262 17.657 -6.613 1.00 64.26 C
ATOM 22 P C A2872 16.154 20.462 -2.233 1.00 56.24 P
ATOM 23 OP1 C A2872 14.862 20.516 -1.493 1.00 56.16 O
ATOM 24 OP2 C A2872 16.189 20.864 -3.629 1.00 56.92 O
ATOM 25 O5' C A2872 17.253 21.243 -1.434 1.00 55.83 O
TER
ATOM 1 O3' U B2871 16.689 18.968 -2.179 1.00 62.74 O
ATOM 2 P C B2872 16.154 20.462 -2.233 1.00 56.24 P
ATOM 3 OP1 C B2872 14.862 20.516 -1.493 1.00 56.16 O
ATOM 4 OP2 C B2872 16.189 20.864 -3.629 1.00 56.92 O
ATOM 5 O5' C B2872 17.253 21.243 -1.434 1.00 55.83 O
ATOM 6 C5' C B2872 18.525 21.435 -1.980 1.00 55.88 C
ATOM 7 C4' C B2872 19.518 21.630 -0.898 1.00 55.28 C
ATOM 8 O4' C B2872 19.007 22.584 0.055 1.00 55.13 O
ATOM 9 C3' C B2872 19.834 20.404 -0.074 1.00 54.66 C
ATOM 10 O3' C B2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 11 C2' C B2872 20.356 21.030 1.217 1.00 54.15 C
ATOM 12 O2' C B2872 21.687 21.467 1.046 1.00 54.09 O
ATOM 13 C1' C B2872 19.496 22.286 1.327 1.00 54.47 C
ATOM 14 N1 C B2872 18.359 22.141 2.246 1.00 54.25 N
ATOM 15 C2 C B2872 18.584 21.997 3.621 1.00 53.63 C
ATOM 16 O2 C B2872 19.729 21.937 4.087 1.00 53.25 O
ATOM 17 N3 C B2872 17.534 21.921 4.447 1.00 53.47 N
ATOM 18 C4 C B2872 16.287 22.005 3.946 1.00 53.90 C
ATOM 19 N4 C B2872 15.262 21.919 4.818 1.00 53.72 N
ATOM 20 C5 C B2872 16.059 22.171 2.547 1.00 54.54 C
ATOM 21 C6 C B2872 17.108 22.257 1.743 1.00 54.69 C
ATOM 22 P U B2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 23 OP1 U B2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 24 OP2 U B2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 25 O5' U B2873 21.791 17.661 0.532 1.00 51.50 O
TER
Atoms:
C4: (20.490,17.888,-7.476)
N3: (20.932,17.187,-6.424)
OP1: (13.052,19.307,-7.049)
OP2: (15.429,19.424,-7.985)
C2: (20.138,16.703,-5.452)
C1': (17.911,16.443,-4.460)
C3': (17.082,18.346,-3.370)
O5': (14.823,17.832,-6.111)
O4': (16.577,16.624,-4.857)
C5': (15.064,18.473,-4.885)
P: (14.309,18.622,-7.375)
C4': (15.939,17.626,-4.031)
C2': (18.101,17.245,-3.173)
O2': (17.720,16.436,-2.082)
N1: (18.778,16.939,-5.550)
O4: (21.368,18.232,-8.238)
O2: (20.657,16.102,-4.551)
C6: (18.262,17.657,-6.613)
C5: (19.068,18.129,-7.560)
O3': (16.689,18.968,-2.179)
N3: (20.932,17.187,-6.424)
OP1: (13.052,19.307,-7.049)
OP2: (15.429,19.424,-7.985)
C2: (20.138,16.703,-5.452)
C1': (17.911,16.443,-4.460)
C3': (17.082,18.346,-3.370)
O5': (14.823,17.832,-6.111)
O4': (16.577,16.624,-4.857)
C5': (15.064,18.473,-4.885)
P: (14.309,18.622,-7.375)
C4': (15.939,17.626,-4.031)
C2': (18.101,17.245,-3.173)
O2': (17.720,16.436,-2.082)
N1: (18.778,16.939,-5.550)
O4: (21.368,18.232,-8.238)
O2: (20.657,16.102,-4.551)
C6: (18.262,17.657,-6.613)
C5: (19.068,18.129,-7.560)
O3': (16.689,18.968,-2.179)
C2: (18.584,21.997,3.621)
OP1: (14.862,20.516,-1.493)
OP2: (16.189,20.864,-3.629)
C4: (16.287,22.005,3.946)
O5': (17.253,21.243,-1.434)
C3': (19.834,20.404,-0.074)
C1': (19.496,22.286,1.327)
O4': (19.007,22.584,0.055)
C5': (18.525,21.435,-1.980)
P: (16.154,20.462,-2.233)
O2: (19.729,21.937,4.087)
C4': (19.518,21.630,-0.898)
C2': (20.356,21.030,1.217)
O2': (21.687,21.467,1.046)
N1: (18.359,22.141,2.246)
N3: (17.534,21.921,4.447)
N4: (15.262,21.919,4.818)
C6: (17.108,22.257,1.743)
C5: (16.059,22.171,2.547)
O3': (20.779,19.566,-0.733)
OP1: (14.862,20.516,-1.493)
OP2: (16.189,20.864,-3.629)
C4: (16.287,22.005,3.946)
O5': (17.253,21.243,-1.434)
C3': (19.834,20.404,-0.074)
C1': (19.496,22.286,1.327)
O4': (19.007,22.584,0.055)
C5': (18.525,21.435,-1.980)
P: (16.154,20.462,-2.233)
O2: (19.729,21.937,4.087)
C4': (19.518,21.630,-0.898)
C2': (20.356,21.030,1.217)
O2': (21.687,21.467,1.046)
N1: (18.359,22.141,2.246)
N3: (17.534,21.921,4.447)
N4: (15.262,21.919,4.818)
C6: (17.108,22.257,1.743)
C5: (16.059,22.171,2.547)
O3': (20.779,19.566,-0.733)
Image (generated by PyMOL):