Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A721:A722
Extra
PDB:
ATOM 1 O3' U A 720 67.925 61.717 52.037 1.00 78.10 O
ATOM 2 P U A 721 68.673 60.312 51.790 1.00 82.25 P
ATOM 3 OP1 U A 721 70.127 60.536 52.044 1.00 81.97 O
ATOM 4 OP2 U A 721 68.236 59.801 50.467 1.00 81.32 O
ATOM 5 O5' U A 721 68.069 59.358 52.923 1.00 87.10 O
ATOM 6 C5' U A 721 68.275 57.931 52.858 1.00 96.08 C
ATOM 7 C4' U A 721 67.014 57.169 53.238 1.00102.40 C
ATOM 8 O4' U A 721 65.822 57.794 52.655 1.00103.97 O
ATOM 9 C3' U A 721 67.000 55.758 52.665 1.00105.79 C
ATOM 10 O3' U A 721 67.834 54.854 53.379 1.00110.05 O
ATOM 11 C2' U A 721 65.511 55.431 52.623 1.00105.38 C
ATOM 12 O2' U A 721 64.958 55.047 53.871 1.00105.38 O
ATOM 13 C1' U A 721 64.929 56.781 52.176 1.00104.34 C
ATOM 14 N1 U A 721 64.758 56.940 50.711 1.00102.82 N
ATOM 15 C2 U A 721 63.651 56.344 50.104 1.00102.05 C
ATOM 16 O2 U A 721 62.849 55.647 50.713 1.00101.62 O
ATOM 17 N3 U A 721 63.521 56.591 48.756 1.00101.32 N
ATOM 18 C4 U A 721 64.363 57.340 47.962 1.00101.25 C
ATOM 19 O4 U A 721 64.067 57.531 46.779 1.00101.48 O
ATOM 20 C5 U A 721 65.496 57.890 48.648 1.00101.06 C
ATOM 21 C6 U A 721 65.650 57.677 49.959 1.00101.92 C
ATOM 22 P C A 722 69.063 54.131 52.617 1.00113.78 P
ATOM 23 OP1 C A 722 70.034 53.785 53.692 1.00113.65 O
ATOM 24 OP2 C A 722 69.534 54.907 51.426 1.00113.86 O
ATOM 25 O5' C A 722 68.430 52.787 52.050 1.00114.95 O
TER
ATOM 1 O3' U B 721 67.834 54.854 53.379 1.00110.05 O
ATOM 2 P C B 722 69.063 54.131 52.617 1.00113.78 P
ATOM 3 OP1 C B 722 70.034 53.785 53.692 1.00113.65 O
ATOM 4 OP2 C B 722 69.534 54.907 51.426 1.00113.86 O
ATOM 5 O5' C B 722 68.430 52.787 52.050 1.00114.95 O
ATOM 6 C5' C B 722 68.697 52.355 50.700 1.00117.92 C
ATOM 7 C4' C B 722 68.730 50.849 50.655 1.00120.60 C
ATOM 8 O4' C B 722 69.874 50.374 51.427 1.00122.01 O
ATOM 9 C3' C B 722 67.515 50.218 51.318 1.00121.46 C
ATOM 10 O3' C B 722 66.397 50.185 50.395 1.00121.41 O
ATOM 11 C2' C B 722 68.063 48.863 51.790 1.00122.20 C
ATOM 12 O2' C B 722 68.117 47.874 50.774 1.00122.24 O
ATOM 13 C1' C B 722 69.510 49.223 52.181 1.00123.06 C
ATOM 14 N1 C B 722 69.810 49.481 53.624 1.00124.39 N
ATOM 15 C2 C B 722 70.375 48.437 54.445 1.00124.93 C
ATOM 16 O2 C B 722 70.626 47.319 53.946 1.00124.73 O
ATOM 17 N3 C B 722 70.631 48.696 55.760 1.00124.79 N
ATOM 18 C4 C B 722 70.368 49.909 56.267 1.00124.51 C
ATOM 19 N4 C B 722 70.631 50.118 57.566 1.00123.93 N
ATOM 20 C5 C B 722 69.819 50.967 55.467 1.00124.26 C
ATOM 21 C6 C B 722 69.557 50.711 54.172 1.00124.22 C
ATOM 22 P A B 723 64.998 50.942 50.757 1.00121.45 P
ATOM 23 OP1 A B 723 63.988 50.451 49.770 1.00121.07 O
ATOM 24 OP2 A B 723 65.206 52.410 50.909 1.00120.65 O
ATOM 25 O5' A B 723 64.580 50.312 52.161 1.00119.99 O
TER
ATOM 2 P U A 721 68.673 60.312 51.790 1.00 82.25 P
ATOM 3 OP1 U A 721 70.127 60.536 52.044 1.00 81.97 O
ATOM 4 OP2 U A 721 68.236 59.801 50.467 1.00 81.32 O
ATOM 5 O5' U A 721 68.069 59.358 52.923 1.00 87.10 O
ATOM 6 C5' U A 721 68.275 57.931 52.858 1.00 96.08 C
ATOM 7 C4' U A 721 67.014 57.169 53.238 1.00102.40 C
ATOM 8 O4' U A 721 65.822 57.794 52.655 1.00103.97 O
ATOM 9 C3' U A 721 67.000 55.758 52.665 1.00105.79 C
ATOM 10 O3' U A 721 67.834 54.854 53.379 1.00110.05 O
ATOM 11 C2' U A 721 65.511 55.431 52.623 1.00105.38 C
ATOM 12 O2' U A 721 64.958 55.047 53.871 1.00105.38 O
ATOM 13 C1' U A 721 64.929 56.781 52.176 1.00104.34 C
ATOM 14 N1 U A 721 64.758 56.940 50.711 1.00102.82 N
ATOM 15 C2 U A 721 63.651 56.344 50.104 1.00102.05 C
ATOM 16 O2 U A 721 62.849 55.647 50.713 1.00101.62 O
ATOM 17 N3 U A 721 63.521 56.591 48.756 1.00101.32 N
ATOM 18 C4 U A 721 64.363 57.340 47.962 1.00101.25 C
ATOM 19 O4 U A 721 64.067 57.531 46.779 1.00101.48 O
ATOM 20 C5 U A 721 65.496 57.890 48.648 1.00101.06 C
ATOM 21 C6 U A 721 65.650 57.677 49.959 1.00101.92 C
ATOM 22 P C A 722 69.063 54.131 52.617 1.00113.78 P
ATOM 23 OP1 C A 722 70.034 53.785 53.692 1.00113.65 O
ATOM 24 OP2 C A 722 69.534 54.907 51.426 1.00113.86 O
ATOM 25 O5' C A 722 68.430 52.787 52.050 1.00114.95 O
TER
ATOM 1 O3' U B 721 67.834 54.854 53.379 1.00110.05 O
ATOM 2 P C B 722 69.063 54.131 52.617 1.00113.78 P
ATOM 3 OP1 C B 722 70.034 53.785 53.692 1.00113.65 O
ATOM 4 OP2 C B 722 69.534 54.907 51.426 1.00113.86 O
ATOM 5 O5' C B 722 68.430 52.787 52.050 1.00114.95 O
ATOM 6 C5' C B 722 68.697 52.355 50.700 1.00117.92 C
ATOM 7 C4' C B 722 68.730 50.849 50.655 1.00120.60 C
ATOM 8 O4' C B 722 69.874 50.374 51.427 1.00122.01 O
ATOM 9 C3' C B 722 67.515 50.218 51.318 1.00121.46 C
ATOM 10 O3' C B 722 66.397 50.185 50.395 1.00121.41 O
ATOM 11 C2' C B 722 68.063 48.863 51.790 1.00122.20 C
ATOM 12 O2' C B 722 68.117 47.874 50.774 1.00122.24 O
ATOM 13 C1' C B 722 69.510 49.223 52.181 1.00123.06 C
ATOM 14 N1 C B 722 69.810 49.481 53.624 1.00124.39 N
ATOM 15 C2 C B 722 70.375 48.437 54.445 1.00124.93 C
ATOM 16 O2 C B 722 70.626 47.319 53.946 1.00124.73 O
ATOM 17 N3 C B 722 70.631 48.696 55.760 1.00124.79 N
ATOM 18 C4 C B 722 70.368 49.909 56.267 1.00124.51 C
ATOM 19 N4 C B 722 70.631 50.118 57.566 1.00123.93 N
ATOM 20 C5 C B 722 69.819 50.967 55.467 1.00124.26 C
ATOM 21 C6 C B 722 69.557 50.711 54.172 1.00124.22 C
ATOM 22 P A B 723 64.998 50.942 50.757 1.00121.45 P
ATOM 23 OP1 A B 723 63.988 50.451 49.770 1.00121.07 O
ATOM 24 OP2 A B 723 65.206 52.410 50.909 1.00120.65 O
ATOM 25 O5' A B 723 64.580 50.312 52.161 1.00119.99 O
TER
Atoms:
C4: (64.363,57.340,47.962)
N3: (63.521,56.591,48.756)
OP1: (70.127,60.536,52.044)
OP2: (68.236,59.801,50.467)
C2: (63.651,56.344,50.104)
C1': (64.929,56.781,52.176)
C3': (67.000,55.758,52.665)
O5': (68.069,59.358,52.923)
O4': (65.822,57.794,52.655)
C5': (68.275,57.931,52.858)
P: (68.673,60.312,51.790)
C4': (67.014,57.169,53.238)
C2': (65.511,55.431,52.623)
O2': (64.958,55.047,53.871)
N1: (64.758,56.940,50.711)
O4: (64.067,57.531,46.779)
O2: (62.849,55.647,50.713)
C6: (65.650,57.677,49.959)
C5: (65.496,57.890,48.648)
O3': (67.834,54.854,53.379)
N3: (63.521,56.591,48.756)
OP1: (70.127,60.536,52.044)
OP2: (68.236,59.801,50.467)
C2: (63.651,56.344,50.104)
C1': (64.929,56.781,52.176)
C3': (67.000,55.758,52.665)
O5': (68.069,59.358,52.923)
O4': (65.822,57.794,52.655)
C5': (68.275,57.931,52.858)
P: (68.673,60.312,51.790)
C4': (67.014,57.169,53.238)
C2': (65.511,55.431,52.623)
O2': (64.958,55.047,53.871)
N1: (64.758,56.940,50.711)
O4: (64.067,57.531,46.779)
O2: (62.849,55.647,50.713)
C6: (65.650,57.677,49.959)
C5: (65.496,57.890,48.648)
O3': (67.834,54.854,53.379)
C2: (70.375,48.437,54.445)
OP1: (70.034,53.785,53.692)
OP2: (69.534,54.907,51.426)
C4: (70.368,49.909,56.267)
O5': (68.430,52.787,52.050)
C3': (67.515,50.218,51.318)
C1': (69.510,49.223,52.181)
O4': (69.874,50.374,51.427)
C5': (68.697,52.355,50.700)
P: (69.063,54.131,52.617)
O2: (70.626,47.319,53.946)
C4': (68.730,50.849,50.655)
C2': (68.063,48.863,51.790)
O2': (68.117,47.874,50.774)
N1: (69.810,49.481,53.624)
N3: (70.631,48.696,55.760)
N4: (70.631,50.118,57.566)
C6: (69.557,50.711,54.172)
C5: (69.819,50.967,55.467)
O3': (66.397,50.185,50.395)
OP1: (70.034,53.785,53.692)
OP2: (69.534,54.907,51.426)
C4: (70.368,49.909,56.267)
O5': (68.430,52.787,52.050)
C3': (67.515,50.218,51.318)
C1': (69.510,49.223,52.181)
O4': (69.874,50.374,51.427)
C5': (68.697,52.355,50.700)
P: (69.063,54.131,52.617)
O2: (70.626,47.319,53.946)
C4': (68.730,50.849,50.655)
C2': (68.063,48.863,51.790)
O2': (68.117,47.874,50.774)
N1: (69.810,49.481,53.624)
N3: (70.631,48.696,55.760)
N4: (70.631,50.118,57.566)
C6: (69.557,50.711,54.172)
C5: (69.819,50.967,55.467)
O3': (66.397,50.185,50.395)
Image (generated by PyMOL):