Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0721:0722
Extra
PDB:
ATOM 1 O3' U A 720 67.968 61.909 51.761 1.00 66.17 O
ATOM 2 P U A 721 68.770 60.566 51.413 1.00 67.69 P
ATOM 3 OP1 U A 721 70.229 60.806 51.552 1.00 67.27 O
ATOM 4 OP2 U A 721 68.233 60.042 50.134 1.00 67.04 O
ATOM 5 O5' U A 721 68.319 59.575 52.570 1.00 73.34 O
ATOM 6 C5' U A 721 68.467 58.170 52.406 1.00 81.88 C
ATOM 7 C4' U A 721 67.241 57.443 52.903 1.00 87.66 C
ATOM 8 O4' U A 721 66.023 58.075 52.414 1.00 88.51 O
ATOM 9 C3' U A 721 67.163 56.026 52.368 1.00 91.37 C
ATOM 10 O3' U A 721 68.017 55.153 53.093 1.00 95.58 O
ATOM 11 C2' U A 721 65.676 55.715 52.458 1.00 90.74 C
ATOM 12 O2' U A 721 65.263 55.345 53.757 1.00 91.44 O
ATOM 13 C1' U A 721 65.066 57.072 52.083 1.00 89.12 C
ATOM 14 N1 U A 721 64.712 57.201 50.655 1.00 87.70 N
ATOM 15 C2 U A 721 63.619 56.485 50.194 1.00 87.17 C
ATOM 16 O2 U A 721 62.966 55.737 50.899 1.00 88.82 O
ATOM 17 N3 U A 721 63.318 56.674 48.871 1.00 86.12 N
ATOM 18 C4 U A 721 63.977 57.480 47.976 1.00 85.74 C
ATOM 19 O4 U A 721 63.510 57.627 46.848 1.00 85.68 O
ATOM 20 C5 U A 721 65.109 58.167 48.513 1.00 85.97 C
ATOM 21 C6 U A 721 65.429 58.010 49.799 1.00 87.00 C
ATOM 22 P C A 722 69.197 54.384 52.319 1.00100.05 P
ATOM 23 OP1 C A 722 70.230 54.009 53.326 1.00 99.18 O
ATOM 24 OP2 C A 722 69.596 55.195 51.128 1.00 99.65 O
ATOM 25 O5' C A 722 68.475 53.062 51.799 1.00101.62 O
TER
ATOM 1 O3' U B 721 68.017 55.153 53.093 1.00 95.58 O
ATOM 2 P C B 722 69.197 54.384 52.319 1.00100.05 P
ATOM 3 OP1 C B 722 70.230 54.009 53.326 1.00 99.18 O
ATOM 4 OP2 C B 722 69.596 55.195 51.128 1.00 99.65 O
ATOM 5 O5' C B 722 68.475 53.062 51.799 1.00101.62 O
ATOM 6 C5' C B 722 68.488 52.692 50.406 1.00105.24 C
ATOM 7 C4' C B 722 68.351 51.196 50.281 1.00108.11 C
ATOM 8 O4' C B 722 69.491 50.571 50.930 1.00109.73 O
ATOM 9 C3' C B 722 67.134 50.616 50.988 1.00108.78 C
ATOM 10 O3' C B 722 65.992 50.639 50.132 1.00108.17 O
ATOM 11 C2' C B 722 67.581 49.195 51.315 1.00110.37 C
ATOM 12 O2' C B 722 67.445 48.309 50.219 1.00110.22 O
ATOM 13 C1' C B 722 69.070 49.405 51.620 1.00111.59 C
ATOM 14 N1 C B 722 69.420 49.560 53.051 1.00113.97 N
ATOM 15 C2 C B 722 69.902 48.436 53.769 1.00115.28 C
ATOM 16 O2 C B 722 69.993 47.330 53.191 1.00115.32 O
ATOM 17 N3 C B 722 70.254 48.591 55.072 1.00115.92 N
ATOM 18 C4 C B 722 70.143 49.789 55.659 1.00115.61 C
ATOM 19 N4 C B 722 70.519 49.896 56.939 1.00115.40 N
ATOM 20 C5 C B 722 69.646 50.932 54.961 1.00114.66 C
ATOM 21 C6 C B 722 69.297 50.773 53.676 1.00113.97 C
ATOM 22 P A B 723 64.619 51.303 50.641 1.00108.29 P
ATOM 23 OP1 A B 723 63.547 50.926 49.679 1.00108.17 O
ATOM 24 OP2 A B 723 64.862 52.739 50.943 1.00108.68 O
ATOM 25 O5' A B 723 64.325 50.555 52.010 1.00106.06 O
TER
ATOM 2 P U A 721 68.770 60.566 51.413 1.00 67.69 P
ATOM 3 OP1 U A 721 70.229 60.806 51.552 1.00 67.27 O
ATOM 4 OP2 U A 721 68.233 60.042 50.134 1.00 67.04 O
ATOM 5 O5' U A 721 68.319 59.575 52.570 1.00 73.34 O
ATOM 6 C5' U A 721 68.467 58.170 52.406 1.00 81.88 C
ATOM 7 C4' U A 721 67.241 57.443 52.903 1.00 87.66 C
ATOM 8 O4' U A 721 66.023 58.075 52.414 1.00 88.51 O
ATOM 9 C3' U A 721 67.163 56.026 52.368 1.00 91.37 C
ATOM 10 O3' U A 721 68.017 55.153 53.093 1.00 95.58 O
ATOM 11 C2' U A 721 65.676 55.715 52.458 1.00 90.74 C
ATOM 12 O2' U A 721 65.263 55.345 53.757 1.00 91.44 O
ATOM 13 C1' U A 721 65.066 57.072 52.083 1.00 89.12 C
ATOM 14 N1 U A 721 64.712 57.201 50.655 1.00 87.70 N
ATOM 15 C2 U A 721 63.619 56.485 50.194 1.00 87.17 C
ATOM 16 O2 U A 721 62.966 55.737 50.899 1.00 88.82 O
ATOM 17 N3 U A 721 63.318 56.674 48.871 1.00 86.12 N
ATOM 18 C4 U A 721 63.977 57.480 47.976 1.00 85.74 C
ATOM 19 O4 U A 721 63.510 57.627 46.848 1.00 85.68 O
ATOM 20 C5 U A 721 65.109 58.167 48.513 1.00 85.97 C
ATOM 21 C6 U A 721 65.429 58.010 49.799 1.00 87.00 C
ATOM 22 P C A 722 69.197 54.384 52.319 1.00100.05 P
ATOM 23 OP1 C A 722 70.230 54.009 53.326 1.00 99.18 O
ATOM 24 OP2 C A 722 69.596 55.195 51.128 1.00 99.65 O
ATOM 25 O5' C A 722 68.475 53.062 51.799 1.00101.62 O
TER
ATOM 1 O3' U B 721 68.017 55.153 53.093 1.00 95.58 O
ATOM 2 P C B 722 69.197 54.384 52.319 1.00100.05 P
ATOM 3 OP1 C B 722 70.230 54.009 53.326 1.00 99.18 O
ATOM 4 OP2 C B 722 69.596 55.195 51.128 1.00 99.65 O
ATOM 5 O5' C B 722 68.475 53.062 51.799 1.00101.62 O
ATOM 6 C5' C B 722 68.488 52.692 50.406 1.00105.24 C
ATOM 7 C4' C B 722 68.351 51.196 50.281 1.00108.11 C
ATOM 8 O4' C B 722 69.491 50.571 50.930 1.00109.73 O
ATOM 9 C3' C B 722 67.134 50.616 50.988 1.00108.78 C
ATOM 10 O3' C B 722 65.992 50.639 50.132 1.00108.17 O
ATOM 11 C2' C B 722 67.581 49.195 51.315 1.00110.37 C
ATOM 12 O2' C B 722 67.445 48.309 50.219 1.00110.22 O
ATOM 13 C1' C B 722 69.070 49.405 51.620 1.00111.59 C
ATOM 14 N1 C B 722 69.420 49.560 53.051 1.00113.97 N
ATOM 15 C2 C B 722 69.902 48.436 53.769 1.00115.28 C
ATOM 16 O2 C B 722 69.993 47.330 53.191 1.00115.32 O
ATOM 17 N3 C B 722 70.254 48.591 55.072 1.00115.92 N
ATOM 18 C4 C B 722 70.143 49.789 55.659 1.00115.61 C
ATOM 19 N4 C B 722 70.519 49.896 56.939 1.00115.40 N
ATOM 20 C5 C B 722 69.646 50.932 54.961 1.00114.66 C
ATOM 21 C6 C B 722 69.297 50.773 53.676 1.00113.97 C
ATOM 22 P A B 723 64.619 51.303 50.641 1.00108.29 P
ATOM 23 OP1 A B 723 63.547 50.926 49.679 1.00108.17 O
ATOM 24 OP2 A B 723 64.862 52.739 50.943 1.00108.68 O
ATOM 25 O5' A B 723 64.325 50.555 52.010 1.00106.06 O
TER
Atoms:
C4: (63.977,57.480,47.976)
N3: (63.318,56.674,48.871)
OP1: (70.229,60.806,51.552)
OP2: (68.233,60.042,50.134)
C2: (63.619,56.485,50.194)
C1': (65.066,57.072,52.083)
C3': (67.163,56.026,52.368)
O5': (68.319,59.575,52.570)
O4': (66.023,58.075,52.414)
C5': (68.467,58.170,52.406)
P: (68.770,60.566,51.413)
C4': (67.241,57.443,52.903)
C2': (65.676,55.715,52.458)
O2': (65.263,55.345,53.757)
N1: (64.712,57.201,50.655)
O4: (63.510,57.627,46.848)
O2: (62.966,55.737,50.899)
C6: (65.429,58.010,49.799)
C5: (65.109,58.167,48.513)
O3': (68.017,55.153,53.093)
N3: (63.318,56.674,48.871)
OP1: (70.229,60.806,51.552)
OP2: (68.233,60.042,50.134)
C2: (63.619,56.485,50.194)
C1': (65.066,57.072,52.083)
C3': (67.163,56.026,52.368)
O5': (68.319,59.575,52.570)
O4': (66.023,58.075,52.414)
C5': (68.467,58.170,52.406)
P: (68.770,60.566,51.413)
C4': (67.241,57.443,52.903)
C2': (65.676,55.715,52.458)
O2': (65.263,55.345,53.757)
N1: (64.712,57.201,50.655)
O4: (63.510,57.627,46.848)
O2: (62.966,55.737,50.899)
C6: (65.429,58.010,49.799)
C5: (65.109,58.167,48.513)
O3': (68.017,55.153,53.093)
C2: (69.902,48.436,53.769)
OP1: (70.230,54.009,53.326)
OP2: (69.596,55.195,51.128)
C4: (70.143,49.789,55.659)
O5': (68.475,53.062,51.799)
C3': (67.134,50.616,50.988)
C1': (69.070,49.405,51.620)
O4': (69.491,50.571,50.930)
C5': (68.488,52.692,50.406)
P: (69.197,54.384,52.319)
O2: (69.993,47.330,53.191)
C4': (68.351,51.196,50.281)
C2': (67.581,49.195,51.315)
O2': (67.445,48.309,50.219)
N1: (69.420,49.560,53.051)
N3: (70.254,48.591,55.072)
N4: (70.519,49.896,56.939)
C6: (69.297,50.773,53.676)
C5: (69.646,50.932,54.961)
O3': (65.992,50.639,50.132)
OP1: (70.230,54.009,53.326)
OP2: (69.596,55.195,51.128)
C4: (70.143,49.789,55.659)
O5': (68.475,53.062,51.799)
C3': (67.134,50.616,50.988)
C1': (69.070,49.405,51.620)
O4': (69.491,50.571,50.930)
C5': (68.488,52.692,50.406)
P: (69.197,54.384,52.319)
O2: (69.993,47.330,53.191)
C4': (68.351,51.196,50.281)
C2': (67.581,49.195,51.315)
O2': (67.445,48.309,50.219)
N1: (69.420,49.560,53.051)
N3: (70.254,48.591,55.072)
N4: (70.519,49.896,56.939)
C6: (69.297,50.773,53.676)
C5: (69.646,50.932,54.961)
O3': (65.992,50.639,50.132)
Image (generated by PyMOL):