Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A19:A56
Extra
PDB:
ATOM 1 O3' G A 18 -14.871 9.424 18.330 1.00 25.03 O
ATOM 2 P U A 19 -15.471 10.810 17.780 1.00 25.10 P
ATOM 3 OP1 U A 19 -15.930 11.578 18.959 1.00 34.70 O
ATOM 4 OP2 U A 19 -16.455 10.479 16.717 1.00 22.99 O
ATOM 5 O5' U A 19 -14.198 11.514 17.135 1.00 28.87 O
ATOM 6 C5' U A 19 -13.015 11.713 17.891 1.00 27.50 C
ATOM 7 C4' U A 19 -11.855 12.092 17.006 1.00 29.37 C
ATOM 8 O4' U A 19 -11.465 10.958 16.191 1.00 30.93 O
ATOM 9 C3' U A 19 -12.122 13.197 15.996 1.00 28.48 C
ATOM 10 O3' U A 19 -12.046 14.493 16.565 1.00 26.75 O
ATOM 11 C2' U A 19 -11.065 12.933 14.928 1.00 27.14 C
ATOM 12 O2' U A 19 -9.803 13.435 15.340 1.00 26.97 O
ATOM 13 C1' U A 19 -10.996 11.405 14.936 1.00 23.92 C
ATOM 14 N1 U A 19 -11.825 10.796 13.877 1.00 22.69 N
ATOM 15 C2 U A 19 -11.227 10.562 12.653 1.00 23.13 C
ATOM 16 O2 U A 19 -10.069 10.859 12.410 1.00 21.48 O
ATOM 17 N3 U A 19 -12.038 9.979 11.712 1.00 21.25 N
ATOM 18 C4 U A 19 -13.355 9.604 11.870 1.00 20.52 C
ATOM 19 O4 U A 19 -13.954 9.089 10.924 1.00 19.96 O
ATOM 20 C5 U A 19 -13.896 9.871 13.167 1.00 20.57 C
ATOM 21 C6 U A 19 -13.130 10.437 14.106 1.00 22.10 C
ATOM 22 P U A 20 -13.141 15.610 16.190 1.00 33.64 P
ATOM 23 OP1 U A 20 -14.035 15.024 15.161 1.00 29.36 O
ATOM 24 OP2 U A 20 -12.398 16.852 15.863 1.00 42.90 O
ATOM 25 O5' U A 20 -13.938 15.799 17.555 1.00 37.06 O
TER
ATOM 1 O3' A B 55 -6.100 14.348 13.698 1.00 25.00 O
ATOM 2 P G B 56 -6.965 15.378 14.571 1.00 27.30 P
ATOM 3 OP1 G B 56 -6.504 15.255 15.974 1.00 31.35 O
ATOM 4 OP2 G B 56 -8.389 15.121 14.263 1.00 27.94 O
ATOM 5 O5' G B 56 -6.535 16.791 13.984 1.00 29.86 O
ATOM 6 C5' G B 56 -7.324 17.440 12.999 1.00 27.92 C
ATOM 7 C4' G B 56 -6.697 17.336 11.632 1.00 23.70 C
ATOM 8 O4' G B 56 -6.627 15.943 11.227 1.00 26.67 O
ATOM 9 C3' G B 56 -7.456 18.007 10.504 1.00 22.01 C
ATOM 10 O3' G B 56 -7.233 19.402 10.437 1.00 24.13 O
ATOM 11 C2' G B 56 -6.963 17.251 9.282 1.00 23.16 C
ATOM 12 O2' G B 56 -5.656 17.678 8.926 1.00 24.14 O
ATOM 13 C1' G B 56 -6.867 15.834 9.838 1.00 23.62 C
ATOM 14 N9 G B 56 -8.120 15.080 9.643 1.00 19.89 N
ATOM 15 C8 G B 56 -9.105 14.897 10.581 1.00 19.84 C
ATOM 16 N7 G B 56 -10.101 14.182 10.141 1.00 19.16 N
ATOM 17 C5 G B 56 -9.754 13.867 8.838 1.00 17.08 C
ATOM 18 C6 G B 56 -10.451 13.106 7.863 1.00 18.49 C
ATOM 19 O6 G B 56 -11.549 12.540 7.958 1.00 20.06 O
ATOM 20 N1 G B 56 -9.739 13.034 6.672 1.00 17.40 N
ATOM 21 C2 G B 56 -8.518 13.622 6.446 1.00 17.43 C
ATOM 22 N2 G B 56 -7.992 13.439 5.225 1.00 16.62 N
ATOM 23 N3 G B 56 -7.861 14.330 7.349 1.00 17.90 N
ATOM 24 C4 G B 56 -8.531 14.413 8.514 1.00 17.73 C
ATOM 25 P C B 57 -8.211 20.326 9.563 1.00 25.29 P
ATOM 26 OP1 C B 57 -7.636 21.693 9.558 1.00 25.05 O
ATOM 27 OP2 C B 57 -9.584 20.129 10.089 1.00 28.23 O
ATOM 28 O5' C B 57 -8.086 19.679 8.116 1.00 27.05 O
TER
ATOM 2 P U A 19 -15.471 10.810 17.780 1.00 25.10 P
ATOM 3 OP1 U A 19 -15.930 11.578 18.959 1.00 34.70 O
ATOM 4 OP2 U A 19 -16.455 10.479 16.717 1.00 22.99 O
ATOM 5 O5' U A 19 -14.198 11.514 17.135 1.00 28.87 O
ATOM 6 C5' U A 19 -13.015 11.713 17.891 1.00 27.50 C
ATOM 7 C4' U A 19 -11.855 12.092 17.006 1.00 29.37 C
ATOM 8 O4' U A 19 -11.465 10.958 16.191 1.00 30.93 O
ATOM 9 C3' U A 19 -12.122 13.197 15.996 1.00 28.48 C
ATOM 10 O3' U A 19 -12.046 14.493 16.565 1.00 26.75 O
ATOM 11 C2' U A 19 -11.065 12.933 14.928 1.00 27.14 C
ATOM 12 O2' U A 19 -9.803 13.435 15.340 1.00 26.97 O
ATOM 13 C1' U A 19 -10.996 11.405 14.936 1.00 23.92 C
ATOM 14 N1 U A 19 -11.825 10.796 13.877 1.00 22.69 N
ATOM 15 C2 U A 19 -11.227 10.562 12.653 1.00 23.13 C
ATOM 16 O2 U A 19 -10.069 10.859 12.410 1.00 21.48 O
ATOM 17 N3 U A 19 -12.038 9.979 11.712 1.00 21.25 N
ATOM 18 C4 U A 19 -13.355 9.604 11.870 1.00 20.52 C
ATOM 19 O4 U A 19 -13.954 9.089 10.924 1.00 19.96 O
ATOM 20 C5 U A 19 -13.896 9.871 13.167 1.00 20.57 C
ATOM 21 C6 U A 19 -13.130 10.437 14.106 1.00 22.10 C
ATOM 22 P U A 20 -13.141 15.610 16.190 1.00 33.64 P
ATOM 23 OP1 U A 20 -14.035 15.024 15.161 1.00 29.36 O
ATOM 24 OP2 U A 20 -12.398 16.852 15.863 1.00 42.90 O
ATOM 25 O5' U A 20 -13.938 15.799 17.555 1.00 37.06 O
TER
ATOM 1 O3' A B 55 -6.100 14.348 13.698 1.00 25.00 O
ATOM 2 P G B 56 -6.965 15.378 14.571 1.00 27.30 P
ATOM 3 OP1 G B 56 -6.504 15.255 15.974 1.00 31.35 O
ATOM 4 OP2 G B 56 -8.389 15.121 14.263 1.00 27.94 O
ATOM 5 O5' G B 56 -6.535 16.791 13.984 1.00 29.86 O
ATOM 6 C5' G B 56 -7.324 17.440 12.999 1.00 27.92 C
ATOM 7 C4' G B 56 -6.697 17.336 11.632 1.00 23.70 C
ATOM 8 O4' G B 56 -6.627 15.943 11.227 1.00 26.67 O
ATOM 9 C3' G B 56 -7.456 18.007 10.504 1.00 22.01 C
ATOM 10 O3' G B 56 -7.233 19.402 10.437 1.00 24.13 O
ATOM 11 C2' G B 56 -6.963 17.251 9.282 1.00 23.16 C
ATOM 12 O2' G B 56 -5.656 17.678 8.926 1.00 24.14 O
ATOM 13 C1' G B 56 -6.867 15.834 9.838 1.00 23.62 C
ATOM 14 N9 G B 56 -8.120 15.080 9.643 1.00 19.89 N
ATOM 15 C8 G B 56 -9.105 14.897 10.581 1.00 19.84 C
ATOM 16 N7 G B 56 -10.101 14.182 10.141 1.00 19.16 N
ATOM 17 C5 G B 56 -9.754 13.867 8.838 1.00 17.08 C
ATOM 18 C6 G B 56 -10.451 13.106 7.863 1.00 18.49 C
ATOM 19 O6 G B 56 -11.549 12.540 7.958 1.00 20.06 O
ATOM 20 N1 G B 56 -9.739 13.034 6.672 1.00 17.40 N
ATOM 21 C2 G B 56 -8.518 13.622 6.446 1.00 17.43 C
ATOM 22 N2 G B 56 -7.992 13.439 5.225 1.00 16.62 N
ATOM 23 N3 G B 56 -7.861 14.330 7.349 1.00 17.90 N
ATOM 24 C4 G B 56 -8.531 14.413 8.514 1.00 17.73 C
ATOM 25 P C B 57 -8.211 20.326 9.563 1.00 25.29 P
ATOM 26 OP1 C B 57 -7.636 21.693 9.558 1.00 25.05 O
ATOM 27 OP2 C B 57 -9.584 20.129 10.089 1.00 28.23 O
ATOM 28 O5' C B 57 -8.086 19.679 8.116 1.00 27.05 O
TER
Atoms:
C4: (-13.355,9.604,11.870)
N3: (-12.038,9.979,11.712)
OP1: (-15.930,11.578,18.959)
OP2: (-16.455,10.479,16.717)
C2: (-11.227,10.562,12.653)
C1': (-10.996,11.405,14.936)
C3': (-12.122,13.197,15.996)
O5': (-14.198,11.514,17.135)
O4': (-11.465,10.958,16.191)
C5': (-13.015,11.713,17.891)
P: (-15.471,10.810,17.780)
C4': (-11.855,12.092,17.006)
C2': (-11.065,12.933,14.928)
O2': (-9.803,13.435,15.340)
N1: (-11.825,10.796,13.877)
O4: (-13.954,9.089,10.924)
O2: (-10.069,10.859,12.410)
C6: (-13.130,10.437,14.106)
C5: (-13.896,9.871,13.167)
O3': (-12.046,14.493,16.565)
N3: (-12.038,9.979,11.712)
OP1: (-15.930,11.578,18.959)
OP2: (-16.455,10.479,16.717)
C2: (-11.227,10.562,12.653)
C1': (-10.996,11.405,14.936)
C3': (-12.122,13.197,15.996)
O5': (-14.198,11.514,17.135)
O4': (-11.465,10.958,16.191)
C5': (-13.015,11.713,17.891)
P: (-15.471,10.810,17.780)
C4': (-11.855,12.092,17.006)
C2': (-11.065,12.933,14.928)
O2': (-9.803,13.435,15.340)
N1: (-11.825,10.796,13.877)
O4: (-13.954,9.089,10.924)
O2: (-10.069,10.859,12.410)
C6: (-13.130,10.437,14.106)
C5: (-13.896,9.871,13.167)
O3': (-12.046,14.493,16.565)
OP1: (-6.504,15.255,15.974)
OP2: (-8.389,15.121,14.263)
C3': (-7.456,18.007,10.504)
C1': (-6.867,15.834,9.838)
C5': (-7.324,17.440,12.999)
O6: (-11.549,12.540,7.958)
O4': (-6.627,15.943,11.227)
C8: (-9.105,14.897,10.581)
C2: (-8.518,13.622,6.446)
C6: (-10.451,13.106,7.863)
C5: (-9.754,13.867,8.838)
C4: (-8.531,14.413,8.514)
P: (-6.965,15.378,14.571)
C4': (-6.697,17.336,11.632)
C2': (-6.963,17.251,9.282)
O2': (-5.656,17.678,8.926)
N1: (-9.739,13.034,6.672)
N2: (-7.992,13.439,5.225)
N3: (-7.861,14.330,7.349)
N7: (-10.101,14.182,10.141)
N9: (-8.120,15.080,9.643)
O5': (-6.535,16.791,13.984)
O3': (-7.233,19.402,10.437)
OP2: (-8.389,15.121,14.263)
C3': (-7.456,18.007,10.504)
C1': (-6.867,15.834,9.838)
C5': (-7.324,17.440,12.999)
O6: (-11.549,12.540,7.958)
O4': (-6.627,15.943,11.227)
C8: (-9.105,14.897,10.581)
C2: (-8.518,13.622,6.446)
C6: (-10.451,13.106,7.863)
C5: (-9.754,13.867,8.838)
C4: (-8.531,14.413,8.514)
P: (-6.965,15.378,14.571)
C4': (-6.697,17.336,11.632)
C2': (-6.963,17.251,9.282)
O2': (-5.656,17.678,8.926)
N1: (-9.739,13.034,6.672)
N2: (-7.992,13.439,5.225)
N3: (-7.861,14.330,7.349)
N7: (-10.101,14.182,10.141)
N9: (-8.120,15.080,9.643)
O5': (-6.535,16.791,13.984)
O3': (-7.233,19.402,10.437)
Image (generated by PyMOL):