Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A258:A228
Extra
PDB:
ATOM 1 O3' G A 257 79.531 104.370 0.326 1.00 60.63 O
ATOM 2 P U A 258 78.048 104.357 0.927 1.00 61.67 P
ATOM 3 OP1 U A 258 77.403 103.131 0.395 1.00 61.85 O
ATOM 4 OP2 U A 258 77.402 105.682 0.700 1.00 62.27 O
ATOM 5 O5' U A 258 78.306 104.167 2.491 1.00 62.86 O
ATOM 6 C5' U A 258 78.972 102.979 2.978 1.00 64.47 C
ATOM 7 C4' U A 258 79.322 103.108 4.448 1.00 65.14 C
ATOM 8 O4' U A 258 80.375 104.106 4.657 1.00 63.38 O
ATOM 9 C3' U A 258 78.166 103.525 5.349 1.00 66.33 C
ATOM 10 O3' U A 258 78.259 102.839 6.602 1.00 70.28 O
ATOM 11 C2' U A 258 78.440 105.014 5.529 1.00 64.84 C
ATOM 12 O2' U A 258 77.754 105.593 6.624 1.00 66.19 O
ATOM 13 C1' U A 258 79.965 104.989 5.680 1.00 62.21 C
ATOM 14 N1 U A 258 80.725 106.257 5.603 1.00 58.60 N
ATOM 15 C2 U A 258 82.058 106.260 6.028 1.00 56.42 C
ATOM 16 O2 U A 258 82.646 105.273 6.385 1.00 54.99 O
ATOM 17 N3 U A 258 82.676 107.483 6.003 1.00 56.68 N
ATOM 18 C4 U A 258 82.130 108.687 5.582 1.00 58.30 C
ATOM 19 O4 U A 258 82.810 109.717 5.628 1.00 58.18 O
ATOM 20 C5 U A 258 80.777 108.602 5.130 1.00 57.83 C
ATOM 21 C6 U A 258 80.138 107.427 5.155 1.00 58.28 C
ATOM 22 P C A 259 76.928 102.259 7.299 1.00 74.47 P
ATOM 23 OP1 C A 259 75.894 103.322 7.172 1.00 73.30 O
ATOM 24 OP2 C A 259 77.278 101.724 8.646 1.00 74.15 O
ATOM 25 O5' C A 259 76.492 101.026 6.386 1.00 76.63 O
TER
ATOM 1 O3' C B 227 77.422 113.048 4.928 1.00 58.34 O
ATOM 2 P C B 228 78.853 112.607 4.342 1.00 60.15 P
ATOM 3 OP1 C B 228 79.029 113.340 3.057 1.00 60.47 O
ATOM 4 OP2 C B 228 78.934 111.122 4.374 1.00 59.26 O
ATOM 5 O5' C B 228 79.893 113.171 5.415 1.00 59.26 O
ATOM 6 C5' C B 228 81.270 112.757 5.439 1.00 58.02 C
ATOM 7 C4' C B 228 81.854 113.054 6.796 1.00 57.58 C
ATOM 8 O4' C B 228 81.161 112.255 7.785 1.00 57.61 O
ATOM 9 C3' C B 228 83.321 112.716 6.986 1.00 58.26 C
ATOM 10 O3' C B 228 84.142 113.793 6.539 1.00 56.91 O
ATOM 11 C2' C B 228 83.424 112.516 8.494 1.00 58.86 C
ATOM 12 O2' C B 228 83.531 113.720 9.242 1.00 60.89 O
ATOM 13 C1' C B 228 82.070 111.868 8.803 1.00 58.29 C
ATOM 14 N1 C B 228 82.024 110.395 8.957 1.00 57.48 N
ATOM 15 C2 C B 228 83.037 109.738 9.690 1.00 58.21 C
ATOM 16 O2 C B 228 83.983 110.400 10.158 1.00 58.62 O
ATOM 17 N3 C B 228 82.950 108.395 9.871 1.00 57.48 N
ATOM 18 C4 C B 228 81.918 107.715 9.363 1.00 57.88 C
ATOM 19 N4 C B 228 81.860 106.402 9.600 1.00 57.22 N
ATOM 20 C5 C B 228 80.896 108.351 8.601 1.00 57.40 C
ATOM 21 C6 C B 228 80.989 109.674 8.421 1.00 57.68 C
ATOM 22 P A B 229 85.492 113.486 5.723 1.00 55.93 P
ATOM 23 OP1 A B 229 86.247 114.772 5.638 1.00 53.79 O
ATOM 24 OP2 A B 229 85.104 112.783 4.478 1.00 57.21 O
ATOM 25 O5' A B 229 86.294 112.454 6.643 1.00 53.66 O
TER
ATOM 2 P U A 258 78.048 104.357 0.927 1.00 61.67 P
ATOM 3 OP1 U A 258 77.403 103.131 0.395 1.00 61.85 O
ATOM 4 OP2 U A 258 77.402 105.682 0.700 1.00 62.27 O
ATOM 5 O5' U A 258 78.306 104.167 2.491 1.00 62.86 O
ATOM 6 C5' U A 258 78.972 102.979 2.978 1.00 64.47 C
ATOM 7 C4' U A 258 79.322 103.108 4.448 1.00 65.14 C
ATOM 8 O4' U A 258 80.375 104.106 4.657 1.00 63.38 O
ATOM 9 C3' U A 258 78.166 103.525 5.349 1.00 66.33 C
ATOM 10 O3' U A 258 78.259 102.839 6.602 1.00 70.28 O
ATOM 11 C2' U A 258 78.440 105.014 5.529 1.00 64.84 C
ATOM 12 O2' U A 258 77.754 105.593 6.624 1.00 66.19 O
ATOM 13 C1' U A 258 79.965 104.989 5.680 1.00 62.21 C
ATOM 14 N1 U A 258 80.725 106.257 5.603 1.00 58.60 N
ATOM 15 C2 U A 258 82.058 106.260 6.028 1.00 56.42 C
ATOM 16 O2 U A 258 82.646 105.273 6.385 1.00 54.99 O
ATOM 17 N3 U A 258 82.676 107.483 6.003 1.00 56.68 N
ATOM 18 C4 U A 258 82.130 108.687 5.582 1.00 58.30 C
ATOM 19 O4 U A 258 82.810 109.717 5.628 1.00 58.18 O
ATOM 20 C5 U A 258 80.777 108.602 5.130 1.00 57.83 C
ATOM 21 C6 U A 258 80.138 107.427 5.155 1.00 58.28 C
ATOM 22 P C A 259 76.928 102.259 7.299 1.00 74.47 P
ATOM 23 OP1 C A 259 75.894 103.322 7.172 1.00 73.30 O
ATOM 24 OP2 C A 259 77.278 101.724 8.646 1.00 74.15 O
ATOM 25 O5' C A 259 76.492 101.026 6.386 1.00 76.63 O
TER
ATOM 1 O3' C B 227 77.422 113.048 4.928 1.00 58.34 O
ATOM 2 P C B 228 78.853 112.607 4.342 1.00 60.15 P
ATOM 3 OP1 C B 228 79.029 113.340 3.057 1.00 60.47 O
ATOM 4 OP2 C B 228 78.934 111.122 4.374 1.00 59.26 O
ATOM 5 O5' C B 228 79.893 113.171 5.415 1.00 59.26 O
ATOM 6 C5' C B 228 81.270 112.757 5.439 1.00 58.02 C
ATOM 7 C4' C B 228 81.854 113.054 6.796 1.00 57.58 C
ATOM 8 O4' C B 228 81.161 112.255 7.785 1.00 57.61 O
ATOM 9 C3' C B 228 83.321 112.716 6.986 1.00 58.26 C
ATOM 10 O3' C B 228 84.142 113.793 6.539 1.00 56.91 O
ATOM 11 C2' C B 228 83.424 112.516 8.494 1.00 58.86 C
ATOM 12 O2' C B 228 83.531 113.720 9.242 1.00 60.89 O
ATOM 13 C1' C B 228 82.070 111.868 8.803 1.00 58.29 C
ATOM 14 N1 C B 228 82.024 110.395 8.957 1.00 57.48 N
ATOM 15 C2 C B 228 83.037 109.738 9.690 1.00 58.21 C
ATOM 16 O2 C B 228 83.983 110.400 10.158 1.00 58.62 O
ATOM 17 N3 C B 228 82.950 108.395 9.871 1.00 57.48 N
ATOM 18 C4 C B 228 81.918 107.715 9.363 1.00 57.88 C
ATOM 19 N4 C B 228 81.860 106.402 9.600 1.00 57.22 N
ATOM 20 C5 C B 228 80.896 108.351 8.601 1.00 57.40 C
ATOM 21 C6 C B 228 80.989 109.674 8.421 1.00 57.68 C
ATOM 22 P A B 229 85.492 113.486 5.723 1.00 55.93 P
ATOM 23 OP1 A B 229 86.247 114.772 5.638 1.00 53.79 O
ATOM 24 OP2 A B 229 85.104 112.783 4.478 1.00 57.21 O
ATOM 25 O5' A B 229 86.294 112.454 6.643 1.00 53.66 O
TER
Atoms:
C4: (82.130,108.687,5.582)
N3: (82.676,107.483,6.003)
OP1: (77.403,103.131,0.395)
OP2: (77.402,105.682,0.700)
C2: (82.058,106.260,6.028)
C1': (79.965,104.989,5.680)
C3': (78.166,103.525,5.349)
O5': (78.306,104.167,2.491)
O4': (80.375,104.106,4.657)
C5': (78.972,102.979,2.978)
P: (78.048,104.357,0.927)
C4': (79.322,103.108,4.448)
C2': (78.440,105.014,5.529)
O2': (77.754,105.593,6.624)
N1: (80.725,106.257,5.603)
O4: (82.810,109.717,5.628)
O2: (82.646,105.273,6.385)
C6: (80.138,107.427,5.155)
C5: (80.777,108.602,5.130)
O3': (78.259,102.839,6.602)
N3: (82.676,107.483,6.003)
OP1: (77.403,103.131,0.395)
OP2: (77.402,105.682,0.700)
C2: (82.058,106.260,6.028)
C1': (79.965,104.989,5.680)
C3': (78.166,103.525,5.349)
O5': (78.306,104.167,2.491)
O4': (80.375,104.106,4.657)
C5': (78.972,102.979,2.978)
P: (78.048,104.357,0.927)
C4': (79.322,103.108,4.448)
C2': (78.440,105.014,5.529)
O2': (77.754,105.593,6.624)
N1: (80.725,106.257,5.603)
O4: (82.810,109.717,5.628)
O2: (82.646,105.273,6.385)
C6: (80.138,107.427,5.155)
C5: (80.777,108.602,5.130)
O3': (78.259,102.839,6.602)
C2: (83.037,109.738,9.690)
OP1: (79.029,113.340,3.057)
OP2: (78.934,111.122,4.374)
C4: (81.918,107.715,9.363)
O5': (79.893,113.171,5.415)
C3': (83.321,112.716,6.986)
C1': (82.070,111.868,8.803)
O4': (81.161,112.255,7.785)
C5': (81.270,112.757,5.439)
P: (78.853,112.607,4.342)
O2: (83.983,110.400,10.158)
C4': (81.854,113.054,6.796)
C2': (83.424,112.516,8.494)
O2': (83.531,113.720,9.242)
N1: (82.024,110.395,8.957)
N3: (82.950,108.395,9.871)
N4: (81.860,106.402,9.600)
C6: (80.989,109.674,8.421)
C5: (80.896,108.351,8.601)
O3': (84.142,113.793,6.539)
OP1: (79.029,113.340,3.057)
OP2: (78.934,111.122,4.374)
C4: (81.918,107.715,9.363)
O5': (79.893,113.171,5.415)
C3': (83.321,112.716,6.986)
C1': (82.070,111.868,8.803)
O4': (81.161,112.255,7.785)
C5': (81.270,112.757,5.439)
P: (78.853,112.607,4.342)
O2: (83.983,110.400,10.158)
C4': (81.854,113.054,6.796)
C2': (83.424,112.516,8.494)
O2': (83.531,113.720,9.242)
N1: (82.024,110.395,8.957)
N3: (82.950,108.395,9.871)
N4: (81.860,106.402,9.600)
C6: (80.989,109.674,8.421)
C5: (80.896,108.351,8.601)
O3': (84.142,113.793,6.539)
Image (generated by PyMOL):