Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B63:B21
Extra
PDB:
ATOM 1 O3' G A 62 -21.688 45.946 7.235 1.00 67.69 O
ATOM 2 P U A 63 -23.148 46.189 6.647 1.00 70.17 P
ATOM 3 OP1 U A 63 -24.039 45.991 7.823 1.00 69.98 O
ATOM 4 OP2 U A 63 -23.409 45.438 5.391 1.00 71.19 O
ATOM 5 O5' U A 63 -23.130 47.739 6.287 1.00 72.29 O
ATOM 6 C5' U A 63 -22.745 48.710 7.271 1.00 72.12 C
ATOM 7 C4' U A 63 -21.703 49.665 6.720 1.00 72.35 C
ATOM 8 O4' U A 63 -21.512 50.809 7.571 1.00 72.28 O
ATOM 9 C3' U A 63 -20.331 49.103 6.358 1.00 72.77 C
ATOM 10 O3' U A 63 -20.174 48.831 4.934 1.00 74.91 O
ATOM 11 C2' U A 63 -19.308 49.984 7.088 1.00 71.07 C
ATOM 12 O2' U A 63 -18.324 50.493 6.211 1.00 71.52 O
ATOM 13 C1' U A 63 -20.150 51.164 7.574 1.00 72.50 C
ATOM 14 N1 U A 63 -19.800 51.459 8.960 1.00 75.21 N
ATOM 15 C2 U A 63 -18.957 52.514 9.196 1.00 77.78 C
ATOM 16 O2 U A 63 -18.521 53.218 8.305 1.00 81.00 O
ATOM 17 N3 U A 63 -18.638 52.722 10.512 1.00 78.38 N
ATOM 18 C4 U A 63 -19.082 51.996 11.594 1.00 77.50 C
ATOM 19 O4 U A 63 -18.692 52.289 12.724 1.00 77.14 O
ATOM 20 C5 U A 63 -19.974 50.927 11.263 1.00 76.93 C
ATOM 21 C6 U A 63 -20.296 50.704 9.982 1.00 75.17 C
ATOM 22 P G A 64 -19.795 50.017 3.905 1.00 76.05 P
ATOM 23 OP1 G A 64 -18.487 49.752 3.234 1.00 74.59 O
ATOM 24 OP2 G A 64 -19.997 51.302 4.628 1.00 76.32 O
ATOM 25 O5' G A 64 -20.960 49.918 2.819 1.00 77.20 O
TER
ATOM 1 O3' U B 20 -20.781 47.773 12.241 1.00 71.33 O
ATOM 2 P C B 21 -20.220 46.475 11.486 1.00 70.04 P
ATOM 3 OP1 C B 21 -19.452 46.933 10.302 1.00 68.27 O
ATOM 4 OP2 C B 21 -21.366 45.536 11.324 1.00 68.52 O
ATOM 5 O5' C B 21 -19.183 45.825 12.501 1.00 69.57 O
ATOM 6 C5' C B 21 -19.569 44.797 13.402 1.00 68.47 C
ATOM 7 C4' C B 21 -18.337 44.159 13.989 1.00 68.59 C
ATOM 8 O4' C B 21 -17.726 43.274 13.020 1.00 68.24 O
ATOM 9 C3' C B 21 -17.237 45.139 14.344 1.00 69.55 C
ATOM 10 O3' C B 21 -17.450 45.694 15.629 1.00 72.91 O
ATOM 11 C2' C B 21 -15.975 44.288 14.279 1.00 67.69 C
ATOM 12 O2' C B 21 -15.761 43.557 15.469 1.00 69.14 O
ATOM 13 C1' C B 21 -16.314 43.305 13.160 1.00 65.88 C
ATOM 14 N1 C B 21 -15.725 43.615 11.847 1.00 62.11 N
ATOM 15 C2 C B 21 -14.343 43.432 11.642 1.00 60.81 C
ATOM 16 O2 C B 21 -13.630 43.057 12.588 1.00 61.74 O
ATOM 17 N3 C B 21 -13.827 43.665 10.418 1.00 58.74 N
ATOM 18 C4 C B 21 -14.624 44.056 9.422 1.00 58.50 C
ATOM 19 N4 C B 21 -14.079 44.240 8.219 1.00 57.43 N
ATOM 20 C5 C B 21 -16.018 44.269 9.610 1.00 58.28 C
ATOM 21 C6 C B 21 -16.519 44.047 10.826 1.00 59.61 C
ATOM 22 P C B 22 -17.080 47.228 15.885 1.00 73.53 P
ATOM 23 OP1 C B 22 -17.682 47.625 17.179 1.00 74.19 O
ATOM 24 OP2 C B 22 -17.458 47.955 14.651 1.00 73.26 O
ATOM 25 O5' C B 22 -15.493 47.213 16.022 1.00 74.17 O
TER
ATOM 2 P U A 63 -23.148 46.189 6.647 1.00 70.17 P
ATOM 3 OP1 U A 63 -24.039 45.991 7.823 1.00 69.98 O
ATOM 4 OP2 U A 63 -23.409 45.438 5.391 1.00 71.19 O
ATOM 5 O5' U A 63 -23.130 47.739 6.287 1.00 72.29 O
ATOM 6 C5' U A 63 -22.745 48.710 7.271 1.00 72.12 C
ATOM 7 C4' U A 63 -21.703 49.665 6.720 1.00 72.35 C
ATOM 8 O4' U A 63 -21.512 50.809 7.571 1.00 72.28 O
ATOM 9 C3' U A 63 -20.331 49.103 6.358 1.00 72.77 C
ATOM 10 O3' U A 63 -20.174 48.831 4.934 1.00 74.91 O
ATOM 11 C2' U A 63 -19.308 49.984 7.088 1.00 71.07 C
ATOM 12 O2' U A 63 -18.324 50.493 6.211 1.00 71.52 O
ATOM 13 C1' U A 63 -20.150 51.164 7.574 1.00 72.50 C
ATOM 14 N1 U A 63 -19.800 51.459 8.960 1.00 75.21 N
ATOM 15 C2 U A 63 -18.957 52.514 9.196 1.00 77.78 C
ATOM 16 O2 U A 63 -18.521 53.218 8.305 1.00 81.00 O
ATOM 17 N3 U A 63 -18.638 52.722 10.512 1.00 78.38 N
ATOM 18 C4 U A 63 -19.082 51.996 11.594 1.00 77.50 C
ATOM 19 O4 U A 63 -18.692 52.289 12.724 1.00 77.14 O
ATOM 20 C5 U A 63 -19.974 50.927 11.263 1.00 76.93 C
ATOM 21 C6 U A 63 -20.296 50.704 9.982 1.00 75.17 C
ATOM 22 P G A 64 -19.795 50.017 3.905 1.00 76.05 P
ATOM 23 OP1 G A 64 -18.487 49.752 3.234 1.00 74.59 O
ATOM 24 OP2 G A 64 -19.997 51.302 4.628 1.00 76.32 O
ATOM 25 O5' G A 64 -20.960 49.918 2.819 1.00 77.20 O
TER
ATOM 1 O3' U B 20 -20.781 47.773 12.241 1.00 71.33 O
ATOM 2 P C B 21 -20.220 46.475 11.486 1.00 70.04 P
ATOM 3 OP1 C B 21 -19.452 46.933 10.302 1.00 68.27 O
ATOM 4 OP2 C B 21 -21.366 45.536 11.324 1.00 68.52 O
ATOM 5 O5' C B 21 -19.183 45.825 12.501 1.00 69.57 O
ATOM 6 C5' C B 21 -19.569 44.797 13.402 1.00 68.47 C
ATOM 7 C4' C B 21 -18.337 44.159 13.989 1.00 68.59 C
ATOM 8 O4' C B 21 -17.726 43.274 13.020 1.00 68.24 O
ATOM 9 C3' C B 21 -17.237 45.139 14.344 1.00 69.55 C
ATOM 10 O3' C B 21 -17.450 45.694 15.629 1.00 72.91 O
ATOM 11 C2' C B 21 -15.975 44.288 14.279 1.00 67.69 C
ATOM 12 O2' C B 21 -15.761 43.557 15.469 1.00 69.14 O
ATOM 13 C1' C B 21 -16.314 43.305 13.160 1.00 65.88 C
ATOM 14 N1 C B 21 -15.725 43.615 11.847 1.00 62.11 N
ATOM 15 C2 C B 21 -14.343 43.432 11.642 1.00 60.81 C
ATOM 16 O2 C B 21 -13.630 43.057 12.588 1.00 61.74 O
ATOM 17 N3 C B 21 -13.827 43.665 10.418 1.00 58.74 N
ATOM 18 C4 C B 21 -14.624 44.056 9.422 1.00 58.50 C
ATOM 19 N4 C B 21 -14.079 44.240 8.219 1.00 57.43 N
ATOM 20 C5 C B 21 -16.018 44.269 9.610 1.00 58.28 C
ATOM 21 C6 C B 21 -16.519 44.047 10.826 1.00 59.61 C
ATOM 22 P C B 22 -17.080 47.228 15.885 1.00 73.53 P
ATOM 23 OP1 C B 22 -17.682 47.625 17.179 1.00 74.19 O
ATOM 24 OP2 C B 22 -17.458 47.955 14.651 1.00 73.26 O
ATOM 25 O5' C B 22 -15.493 47.213 16.022 1.00 74.17 O
TER
Atoms:
C4: (-19.082,51.996,11.594)
N3: (-18.638,52.722,10.512)
OP1: (-24.039,45.991,7.823)
OP2: (-23.409,45.438,5.391)
C2: (-18.957,52.514,9.196)
C1': (-20.150,51.164,7.574)
C3': (-20.331,49.103,6.358)
O5': (-23.130,47.739,6.287)
O4': (-21.512,50.809,7.571)
C5': (-22.745,48.710,7.271)
P: (-23.148,46.189,6.647)
C4': (-21.703,49.665,6.720)
C2': (-19.308,49.984,7.088)
O2': (-18.324,50.493,6.211)
N1: (-19.800,51.459,8.960)
O4: (-18.692,52.289,12.724)
O2: (-18.521,53.218,8.305)
C6: (-20.296,50.704,9.982)
C5: (-19.974,50.927,11.263)
O3': (-20.174,48.831,4.934)
N3: (-18.638,52.722,10.512)
OP1: (-24.039,45.991,7.823)
OP2: (-23.409,45.438,5.391)
C2: (-18.957,52.514,9.196)
C1': (-20.150,51.164,7.574)
C3': (-20.331,49.103,6.358)
O5': (-23.130,47.739,6.287)
O4': (-21.512,50.809,7.571)
C5': (-22.745,48.710,7.271)
P: (-23.148,46.189,6.647)
C4': (-21.703,49.665,6.720)
C2': (-19.308,49.984,7.088)
O2': (-18.324,50.493,6.211)
N1: (-19.800,51.459,8.960)
O4: (-18.692,52.289,12.724)
O2: (-18.521,53.218,8.305)
C6: (-20.296,50.704,9.982)
C5: (-19.974,50.927,11.263)
O3': (-20.174,48.831,4.934)
C2: (-14.343,43.432,11.642)
OP1: (-19.452,46.933,10.302)
OP2: (-21.366,45.536,11.324)
C4: (-14.624,44.056,9.422)
O5': (-19.183,45.825,12.501)
C3': (-17.237,45.139,14.344)
C1': (-16.314,43.305,13.160)
O4': (-17.726,43.274,13.020)
C5': (-19.569,44.797,13.402)
P: (-20.220,46.475,11.486)
O2: (-13.630,43.057,12.588)
C4': (-18.337,44.159,13.989)
C2': (-15.975,44.288,14.279)
O2': (-15.761,43.557,15.469)
N1: (-15.725,43.615,11.847)
N3: (-13.827,43.665,10.418)
N4: (-14.079,44.240,8.219)
C6: (-16.519,44.047,10.826)
C5: (-16.018,44.269,9.610)
O3': (-17.450,45.694,15.629)
OP1: (-19.452,46.933,10.302)
OP2: (-21.366,45.536,11.324)
C4: (-14.624,44.056,9.422)
O5': (-19.183,45.825,12.501)
C3': (-17.237,45.139,14.344)
C1': (-16.314,43.305,13.160)
O4': (-17.726,43.274,13.020)
C5': (-19.569,44.797,13.402)
P: (-20.220,46.475,11.486)
O2: (-13.630,43.057,12.588)
C4': (-18.337,44.159,13.989)
C2': (-15.975,44.288,14.279)
O2': (-15.761,43.557,15.469)
N1: (-15.725,43.615,11.847)
N3: (-13.827,43.665,10.418)
N4: (-14.079,44.240,8.219)
C6: (-16.519,44.047,10.826)
C5: (-16.018,44.269,9.610)
O3': (-17.450,45.694,15.629)
Image (generated by PyMOL):