Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12016:12017
Extra
PDB:
ATOM 1 O3' A A2015 -8.041 -46.849 104.647 1.00180.33 O
ATOM 2 P U A2016 -9.033 -47.997 104.123 1.00195.00 P
ATOM 3 OP1 U A2016 -10.376 -47.384 103.972 1.00195.10 O
ATOM 4 OP2 U A2016 -8.889 -49.161 105.028 1.00195.40 O
ATOM 5 O5' U A2016 -8.430 -48.335 102.693 1.00194.69 O
ATOM 6 C5' U A2016 -7.450 -47.492 102.104 1.00194.21 C
ATOM 7 C4' U A2016 -6.069 -48.064 102.268 1.00194.11 C
ATOM 8 O4' U A2016 -5.612 -47.823 103.633 1.00194.23 O
ATOM 9 C3' U A2016 -5.965 -49.572 102.025 1.00194.38 C
ATOM 10 O3' U A2016 -4.854 -49.880 101.145 1.00194.10 O
ATOM 11 C2' U A2016 -5.777 -50.164 103.436 1.00194.75 C
ATOM 12 O2' U A2016 -5.024 -51.361 103.487 1.00194.90 O
ATOM 13 C1' U A2016 -5.094 -49.018 104.190 1.00194.51 C
ATOM 14 N1 U A2016 -5.327 -49.009 105.672 1.00194.85 N
ATOM 15 C2 U A2016 -4.322 -48.516 106.509 1.00194.74 C
ATOM 16 O2 U A2016 -3.257 -48.055 106.104 1.00194.37 O
ATOM 17 N3 U A2016 -4.621 -48.562 107.860 1.00195.09 N
ATOM 18 C4 U A2016 -5.770 -49.043 108.465 1.00195.53 C
ATOM 19 O4 U A2016 -5.882 -49.014 109.692 1.00195.82 O
ATOM 20 C5 U A2016 -6.745 -49.544 107.551 1.00195.61 C
ATOM 21 C6 U A2016 -6.476 -49.517 106.240 1.00195.28 C
ATOM 22 P G A2017 -3.307 -49.756 101.612 1.00 97.98 P
ATOM 23 OP1 G A2017 -3.025 -50.938 102.502 1.00 98.37 O
ATOM 24 OP2 G A2017 -3.097 -48.361 102.155 1.00 97.73 O
ATOM 25 O5' G A2017 -2.494 -49.916 100.228 1.00 97.63 O
TER
ATOM 1 O3' U B2016 -4.854 -49.880 101.145 1.00194.10 O
ATOM 2 P G B2017 -3.307 -49.756 101.612 1.00 97.98 P
ATOM 3 OP1 G B2017 -3.025 -50.938 102.502 1.00 98.37 O
ATOM 4 OP2 G B2017 -3.097 -48.361 102.155 1.00 97.73 O
ATOM 5 O5' G B2017 -2.494 -49.916 100.228 1.00 97.63 O
ATOM 6 C5' G B2017 -3.067 -49.529 98.977 1.00 97.43 C
ATOM 7 C4' G B2017 -2.261 -48.444 98.254 1.00 96.93 C
ATOM 8 O4' G B2017 -2.915 -47.154 98.392 1.00 96.78 O
ATOM 9 C3' G B2017 -0.833 -48.160 98.721 1.00 96.71 C
ATOM 10 O3' G B2017 0.121 -49.136 98.307 1.00 96.71 O
ATOM 11 C2' G B2017 -0.586 -46.792 98.101 1.00 96.27 C
ATOM 12 O2' G B2017 -0.306 -46.925 96.716 1.00 96.04 O
ATOM 13 C1' G B2017 -1.960 -46.127 98.256 1.00 96.38 C
ATOM 14 N9 G B2017 -2.028 -45.235 99.438 1.00 96.41 N
ATOM 15 C8 G B2017 -2.624 -45.407 100.669 1.00 96.76 C
ATOM 16 N7 G B2017 -2.456 -44.371 101.462 1.00 96.66 N
ATOM 17 C5 G B2017 -1.699 -43.468 100.718 1.00 96.23 C
ATOM 18 C6 G B2017 -1.183 -42.173 100.999 1.00 95.96 C
ATOM 19 O6 G B2017 -1.262 -41.480 102.012 1.00 96.03 O
ATOM 20 N1 G B2017 -0.486 -41.635 99.945 1.00 95.56 N
ATOM 21 C2 G B2017 -0.281 -42.253 98.759 1.00 95.44 C
ATOM 22 N2 G B2017 0.434 -41.584 97.851 1.00 95.05 N
ATOM 23 N3 G B2017 -0.742 -43.443 98.474 1.00 95.68 N
ATOM 24 C4 G B2017 -1.439 -43.990 99.483 1.00 96.07 C
ATOM 25 P U B2018 1.418 -49.457 99.232 1.00 74.28 P
ATOM 26 OP1 U B2018 2.097 -50.657 98.645 1.00 74.36 O
ATOM 27 OP2 U B2018 0.930 -49.529 100.648 1.00 74.61 O
ATOM 28 O5' U B2018 2.351 -48.152 99.024 1.00 73.81 O
TER
ATOM 2 P U A2016 -9.033 -47.997 104.123 1.00195.00 P
ATOM 3 OP1 U A2016 -10.376 -47.384 103.972 1.00195.10 O
ATOM 4 OP2 U A2016 -8.889 -49.161 105.028 1.00195.40 O
ATOM 5 O5' U A2016 -8.430 -48.335 102.693 1.00194.69 O
ATOM 6 C5' U A2016 -7.450 -47.492 102.104 1.00194.21 C
ATOM 7 C4' U A2016 -6.069 -48.064 102.268 1.00194.11 C
ATOM 8 O4' U A2016 -5.612 -47.823 103.633 1.00194.23 O
ATOM 9 C3' U A2016 -5.965 -49.572 102.025 1.00194.38 C
ATOM 10 O3' U A2016 -4.854 -49.880 101.145 1.00194.10 O
ATOM 11 C2' U A2016 -5.777 -50.164 103.436 1.00194.75 C
ATOM 12 O2' U A2016 -5.024 -51.361 103.487 1.00194.90 O
ATOM 13 C1' U A2016 -5.094 -49.018 104.190 1.00194.51 C
ATOM 14 N1 U A2016 -5.327 -49.009 105.672 1.00194.85 N
ATOM 15 C2 U A2016 -4.322 -48.516 106.509 1.00194.74 C
ATOM 16 O2 U A2016 -3.257 -48.055 106.104 1.00194.37 O
ATOM 17 N3 U A2016 -4.621 -48.562 107.860 1.00195.09 N
ATOM 18 C4 U A2016 -5.770 -49.043 108.465 1.00195.53 C
ATOM 19 O4 U A2016 -5.882 -49.014 109.692 1.00195.82 O
ATOM 20 C5 U A2016 -6.745 -49.544 107.551 1.00195.61 C
ATOM 21 C6 U A2016 -6.476 -49.517 106.240 1.00195.28 C
ATOM 22 P G A2017 -3.307 -49.756 101.612 1.00 97.98 P
ATOM 23 OP1 G A2017 -3.025 -50.938 102.502 1.00 98.37 O
ATOM 24 OP2 G A2017 -3.097 -48.361 102.155 1.00 97.73 O
ATOM 25 O5' G A2017 -2.494 -49.916 100.228 1.00 97.63 O
TER
ATOM 1 O3' U B2016 -4.854 -49.880 101.145 1.00194.10 O
ATOM 2 P G B2017 -3.307 -49.756 101.612 1.00 97.98 P
ATOM 3 OP1 G B2017 -3.025 -50.938 102.502 1.00 98.37 O
ATOM 4 OP2 G B2017 -3.097 -48.361 102.155 1.00 97.73 O
ATOM 5 O5' G B2017 -2.494 -49.916 100.228 1.00 97.63 O
ATOM 6 C5' G B2017 -3.067 -49.529 98.977 1.00 97.43 C
ATOM 7 C4' G B2017 -2.261 -48.444 98.254 1.00 96.93 C
ATOM 8 O4' G B2017 -2.915 -47.154 98.392 1.00 96.78 O
ATOM 9 C3' G B2017 -0.833 -48.160 98.721 1.00 96.71 C
ATOM 10 O3' G B2017 0.121 -49.136 98.307 1.00 96.71 O
ATOM 11 C2' G B2017 -0.586 -46.792 98.101 1.00 96.27 C
ATOM 12 O2' G B2017 -0.306 -46.925 96.716 1.00 96.04 O
ATOM 13 C1' G B2017 -1.960 -46.127 98.256 1.00 96.38 C
ATOM 14 N9 G B2017 -2.028 -45.235 99.438 1.00 96.41 N
ATOM 15 C8 G B2017 -2.624 -45.407 100.669 1.00 96.76 C
ATOM 16 N7 G B2017 -2.456 -44.371 101.462 1.00 96.66 N
ATOM 17 C5 G B2017 -1.699 -43.468 100.718 1.00 96.23 C
ATOM 18 C6 G B2017 -1.183 -42.173 100.999 1.00 95.96 C
ATOM 19 O6 G B2017 -1.262 -41.480 102.012 1.00 96.03 O
ATOM 20 N1 G B2017 -0.486 -41.635 99.945 1.00 95.56 N
ATOM 21 C2 G B2017 -0.281 -42.253 98.759 1.00 95.44 C
ATOM 22 N2 G B2017 0.434 -41.584 97.851 1.00 95.05 N
ATOM 23 N3 G B2017 -0.742 -43.443 98.474 1.00 95.68 N
ATOM 24 C4 G B2017 -1.439 -43.990 99.483 1.00 96.07 C
ATOM 25 P U B2018 1.418 -49.457 99.232 1.00 74.28 P
ATOM 26 OP1 U B2018 2.097 -50.657 98.645 1.00 74.36 O
ATOM 27 OP2 U B2018 0.930 -49.529 100.648 1.00 74.61 O
ATOM 28 O5' U B2018 2.351 -48.152 99.024 1.00 73.81 O
TER
Atoms:
C4: (-5.770,-49.043,108.465)
N3: (-4.621,-48.562,107.860)
OP1: (-10.376,-47.384,103.972)
OP2: (-8.889,-49.161,105.028)
C2: (-4.322,-48.516,106.509)
C1': (-5.094,-49.018,104.190)
C3': (-5.965,-49.572,102.025)
O5': (-8.430,-48.335,102.693)
O4': (-5.612,-47.823,103.633)
C5': (-7.450,-47.492,102.104)
P: (-9.033,-47.997,104.123)
C4': (-6.069,-48.064,102.268)
C2': (-5.777,-50.164,103.436)
O2': (-5.024,-51.361,103.487)
N1: (-5.327,-49.009,105.672)
O4: (-5.882,-49.014,109.692)
O2: (-3.257,-48.055,106.104)
C6: (-6.476,-49.517,106.240)
C5: (-6.745,-49.544,107.551)
O3': (-4.854,-49.880,101.145)
N3: (-4.621,-48.562,107.860)
OP1: (-10.376,-47.384,103.972)
OP2: (-8.889,-49.161,105.028)
C2: (-4.322,-48.516,106.509)
C1': (-5.094,-49.018,104.190)
C3': (-5.965,-49.572,102.025)
O5': (-8.430,-48.335,102.693)
O4': (-5.612,-47.823,103.633)
C5': (-7.450,-47.492,102.104)
P: (-9.033,-47.997,104.123)
C4': (-6.069,-48.064,102.268)
C2': (-5.777,-50.164,103.436)
O2': (-5.024,-51.361,103.487)
N1: (-5.327,-49.009,105.672)
O4: (-5.882,-49.014,109.692)
O2: (-3.257,-48.055,106.104)
C6: (-6.476,-49.517,106.240)
C5: (-6.745,-49.544,107.551)
O3': (-4.854,-49.880,101.145)
OP1: (-3.025,-50.938,102.502)
OP2: (-3.097,-48.361,102.155)
C3': (-0.833,-48.160,98.721)
C1': (-1.960,-46.127,98.256)
C5': (-3.067,-49.529,98.977)
O6: (-1.262,-41.480,102.012)
O4': (-2.915,-47.154,98.392)
C8: (-2.624,-45.407,100.669)
C2: (-0.281,-42.253,98.759)
C6: (-1.183,-42.173,100.999)
C5: (-1.699,-43.468,100.718)
C4: (-1.439,-43.990,99.483)
P: (-3.307,-49.756,101.612)
C4': (-2.261,-48.444,98.254)
C2': (-0.586,-46.792,98.101)
O2': (-0.306,-46.925,96.716)
N1: (-0.486,-41.635,99.945)
N2: (0.434,-41.584,97.851)
N3: (-0.742,-43.443,98.474)
N7: (-2.456,-44.371,101.462)
N9: (-2.028,-45.235,99.438)
O5': (-2.494,-49.916,100.228)
O3': (0.121,-49.136,98.307)
OP2: (-3.097,-48.361,102.155)
C3': (-0.833,-48.160,98.721)
C1': (-1.960,-46.127,98.256)
C5': (-3.067,-49.529,98.977)
O6: (-1.262,-41.480,102.012)
O4': (-2.915,-47.154,98.392)
C8: (-2.624,-45.407,100.669)
C2: (-0.281,-42.253,98.759)
C6: (-1.183,-42.173,100.999)
C5: (-1.699,-43.468,100.718)
C4: (-1.439,-43.990,99.483)
P: (-3.307,-49.756,101.612)
C4': (-2.261,-48.444,98.254)
C2': (-0.586,-46.792,98.101)
O2': (-0.306,-46.925,96.716)
N1: (-0.486,-41.635,99.945)
N2: (0.434,-41.584,97.851)
N3: (-0.742,-43.443,98.474)
N7: (-2.456,-44.371,101.462)
N9: (-2.028,-45.235,99.438)
O5': (-2.494,-49.916,100.228)
O3': (0.121,-49.136,98.307)
Image (generated by PyMOL):