Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A272:A273
Extra
PDB:
ATOM 1 O3' U A 271 65.432 104.270 -7.612 1.00140.39 O
ATOM 2 P C A 272 64.260 103.169 -7.448 1.00140.67 P
ATOM 3 OP1 C A 272 64.909 101.822 -7.482 1.00140.21 O
ATOM 4 OP2 C A 272 63.170 103.478 -8.409 1.00140.78 O
ATOM 5 O5' C A 272 63.685 103.427 -5.983 1.00139.64 O
ATOM 6 C5' C A 272 64.319 104.369 -5.093 1.00138.18 C
ATOM 7 C4' C A 272 63.531 105.664 -5.029 1.00136.90 C
ATOM 8 O4' C A 272 63.627 106.383 -6.291 1.00137.24 O
ATOM 9 C3' C A 272 62.037 105.551 -4.714 1.00135.72 C
ATOM 10 O3' C A 272 61.575 106.672 -3.936 1.00132.95 O
ATOM 11 C2' C A 272 61.419 105.667 -6.111 1.00136.20 C
ATOM 12 O2' C A 272 60.068 106.095 -6.134 1.00136.08 O
ATOM 13 C1' C A 272 62.330 106.731 -6.721 1.00136.94 C
ATOM 14 N1 C A 272 62.352 106.945 -8.184 1.00137.52 N
ATOM 15 C2 C A 272 63.023 108.081 -8.682 1.00137.94 C
ATOM 16 O2 C A 272 63.599 108.843 -7.888 1.00138.00 O
ATOM 17 N3 C A 272 63.026 108.316 -10.011 1.00138.55 N
ATOM 18 C4 C A 272 62.401 107.478 -10.840 1.00138.64 C
ATOM 19 N4 C A 272 62.411 107.775 -12.142 1.00138.76 N
ATOM 20 C5 C A 272 61.734 106.308 -10.370 1.00138.30 C
ATOM 21 C6 C A 272 61.732 106.082 -9.048 1.00137.86 C
ATOM 22 P A A 273 62.540 107.386 -2.849 1.00130.68 P
ATOM 23 OP1 A A 273 61.706 107.715 -1.661 1.00130.70 O
ATOM 24 OP2 A A 273 63.266 108.475 -3.562 1.00130.17 O
ATOM 25 O5' A A 273 63.619 106.288 -2.428 1.00127.85 O
TER
ATOM 1 O3' C B 272 61.575 106.672 -3.936 1.00132.95 O
ATOM 2 P A B 273 62.540 107.386 -2.849 1.00130.68 P
ATOM 3 OP1 A B 273 61.706 107.715 -1.661 1.00130.70 O
ATOM 4 OP2 A B 273 63.266 108.475 -3.562 1.00130.17 O
ATOM 5 O5' A B 273 63.619 106.288 -2.428 1.00127.85 O
ATOM 6 C5' A B 273 63.306 105.221 -1.507 1.00122.28 C
ATOM 7 C4' A B 273 64.547 104.838 -0.732 1.00118.30 C
ATOM 8 O4' A B 273 65.590 104.454 -1.676 1.00117.19 O
ATOM 9 C3' A B 273 65.174 105.979 0.057 1.00115.99 C
ATOM 10 O3' A B 273 64.543 106.202 1.319 1.00113.33 O
ATOM 11 C2' A B 273 66.629 105.541 0.153 1.00115.62 C
ATOM 12 O2' A B 273 66.856 104.528 1.119 1.00115.19 O
ATOM 13 C1' A B 273 66.848 104.963 -1.247 1.00115.63 C
ATOM 14 N9 A B 273 67.321 105.948 -2.237 1.00114.82 N
ATOM 15 C8 A B 273 66.607 106.518 -3.270 1.00114.19 C
ATOM 16 N7 A B 273 67.309 107.341 -4.014 1.00113.58 N
ATOM 17 C5 A B 273 68.571 107.324 -3.433 1.00113.60 C
ATOM 18 C6 A B 273 69.783 107.982 -3.760 1.00113.35 C
ATOM 19 N6 A B 273 69.934 108.800 -4.807 1.00112.93 N
ATOM 20 N1 A B 273 70.851 107.757 -2.964 1.00113.45 N
ATOM 21 C2 A B 273 70.715 106.922 -1.928 1.00113.70 C
ATOM 22 N3 A B 273 69.644 106.236 -1.528 1.00114.19 N
ATOM 23 C4 A B 273 68.591 106.482 -2.330 1.00114.14 C
ATOM 24 P U B 274 64.278 107.712 1.825 1.00111.46 P
ATOM 25 OP1 U B 274 63.605 107.606 3.140 1.00111.59 O
ATOM 26 OP2 U B 274 63.645 108.507 0.737 1.00111.19 O
ATOM 27 O5' U B 274 65.730 108.315 2.075 1.00109.33 O
TER
ATOM 2 P C A 272 64.260 103.169 -7.448 1.00140.67 P
ATOM 3 OP1 C A 272 64.909 101.822 -7.482 1.00140.21 O
ATOM 4 OP2 C A 272 63.170 103.478 -8.409 1.00140.78 O
ATOM 5 O5' C A 272 63.685 103.427 -5.983 1.00139.64 O
ATOM 6 C5' C A 272 64.319 104.369 -5.093 1.00138.18 C
ATOM 7 C4' C A 272 63.531 105.664 -5.029 1.00136.90 C
ATOM 8 O4' C A 272 63.627 106.383 -6.291 1.00137.24 O
ATOM 9 C3' C A 272 62.037 105.551 -4.714 1.00135.72 C
ATOM 10 O3' C A 272 61.575 106.672 -3.936 1.00132.95 O
ATOM 11 C2' C A 272 61.419 105.667 -6.111 1.00136.20 C
ATOM 12 O2' C A 272 60.068 106.095 -6.134 1.00136.08 O
ATOM 13 C1' C A 272 62.330 106.731 -6.721 1.00136.94 C
ATOM 14 N1 C A 272 62.352 106.945 -8.184 1.00137.52 N
ATOM 15 C2 C A 272 63.023 108.081 -8.682 1.00137.94 C
ATOM 16 O2 C A 272 63.599 108.843 -7.888 1.00138.00 O
ATOM 17 N3 C A 272 63.026 108.316 -10.011 1.00138.55 N
ATOM 18 C4 C A 272 62.401 107.478 -10.840 1.00138.64 C
ATOM 19 N4 C A 272 62.411 107.775 -12.142 1.00138.76 N
ATOM 20 C5 C A 272 61.734 106.308 -10.370 1.00138.30 C
ATOM 21 C6 C A 272 61.732 106.082 -9.048 1.00137.86 C
ATOM 22 P A A 273 62.540 107.386 -2.849 1.00130.68 P
ATOM 23 OP1 A A 273 61.706 107.715 -1.661 1.00130.70 O
ATOM 24 OP2 A A 273 63.266 108.475 -3.562 1.00130.17 O
ATOM 25 O5' A A 273 63.619 106.288 -2.428 1.00127.85 O
TER
ATOM 1 O3' C B 272 61.575 106.672 -3.936 1.00132.95 O
ATOM 2 P A B 273 62.540 107.386 -2.849 1.00130.68 P
ATOM 3 OP1 A B 273 61.706 107.715 -1.661 1.00130.70 O
ATOM 4 OP2 A B 273 63.266 108.475 -3.562 1.00130.17 O
ATOM 5 O5' A B 273 63.619 106.288 -2.428 1.00127.85 O
ATOM 6 C5' A B 273 63.306 105.221 -1.507 1.00122.28 C
ATOM 7 C4' A B 273 64.547 104.838 -0.732 1.00118.30 C
ATOM 8 O4' A B 273 65.590 104.454 -1.676 1.00117.19 O
ATOM 9 C3' A B 273 65.174 105.979 0.057 1.00115.99 C
ATOM 10 O3' A B 273 64.543 106.202 1.319 1.00113.33 O
ATOM 11 C2' A B 273 66.629 105.541 0.153 1.00115.62 C
ATOM 12 O2' A B 273 66.856 104.528 1.119 1.00115.19 O
ATOM 13 C1' A B 273 66.848 104.963 -1.247 1.00115.63 C
ATOM 14 N9 A B 273 67.321 105.948 -2.237 1.00114.82 N
ATOM 15 C8 A B 273 66.607 106.518 -3.270 1.00114.19 C
ATOM 16 N7 A B 273 67.309 107.341 -4.014 1.00113.58 N
ATOM 17 C5 A B 273 68.571 107.324 -3.433 1.00113.60 C
ATOM 18 C6 A B 273 69.783 107.982 -3.760 1.00113.35 C
ATOM 19 N6 A B 273 69.934 108.800 -4.807 1.00112.93 N
ATOM 20 N1 A B 273 70.851 107.757 -2.964 1.00113.45 N
ATOM 21 C2 A B 273 70.715 106.922 -1.928 1.00113.70 C
ATOM 22 N3 A B 273 69.644 106.236 -1.528 1.00114.19 N
ATOM 23 C4 A B 273 68.591 106.482 -2.330 1.00114.14 C
ATOM 24 P U B 274 64.278 107.712 1.825 1.00111.46 P
ATOM 25 OP1 U B 274 63.605 107.606 3.140 1.00111.59 O
ATOM 26 OP2 U B 274 63.645 108.507 0.737 1.00111.19 O
ATOM 27 O5' U B 274 65.730 108.315 2.075 1.00109.33 O
TER
Atoms:
C2: (63.023,108.081,-8.682)
OP1: (64.909,101.822,-7.482)
OP2: (63.170,103.478,-8.409)
C4: (62.401,107.478,-10.840)
O5': (63.685,103.427,-5.983)
C3': (62.037,105.551,-4.714)
C1': (62.330,106.731,-6.721)
O4': (63.627,106.383,-6.291)
C5': (64.319,104.369,-5.093)
P: (64.260,103.169,-7.448)
O2: (63.599,108.843,-7.888)
C4': (63.531,105.664,-5.029)
C2': (61.419,105.667,-6.111)
O2': (60.068,106.095,-6.134)
N1: (62.352,106.945,-8.184)
N3: (63.026,108.316,-10.011)
N4: (62.411,107.775,-12.142)
C6: (61.732,106.082,-9.048)
C5: (61.734,106.308,-10.370)
O3': (61.575,106.672,-3.936)
OP1: (64.909,101.822,-7.482)
OP2: (63.170,103.478,-8.409)
C4: (62.401,107.478,-10.840)
O5': (63.685,103.427,-5.983)
C3': (62.037,105.551,-4.714)
C1': (62.330,106.731,-6.721)
O4': (63.627,106.383,-6.291)
C5': (64.319,104.369,-5.093)
P: (64.260,103.169,-7.448)
O2: (63.599,108.843,-7.888)
C4': (63.531,105.664,-5.029)
C2': (61.419,105.667,-6.111)
O2': (60.068,106.095,-6.134)
N1: (62.352,106.945,-8.184)
N3: (63.026,108.316,-10.011)
N4: (62.411,107.775,-12.142)
C6: (61.732,106.082,-9.048)
C5: (61.734,106.308,-10.370)
O3': (61.575,106.672,-3.936)
OP1: (61.706,107.715,-1.661)
OP2: (63.266,108.475,-3.562)
C3': (65.174,105.979,0.057)
C1': (66.848,104.963,-1.247)
C5': (63.306,105.221,-1.507)
O4': (65.590,104.454,-1.676)
C8: (66.607,106.518,-3.270)
O2': (66.856,104.528,1.119)
C6: (69.783,107.982,-3.760)
C5: (68.571,107.324,-3.433)
C4: (68.591,106.482,-2.330)
P: (62.540,107.386,-2.849)
C4': (64.547,104.838,-0.732)
C2': (66.629,105.541,0.153)
C2: (70.715,106.922,-1.928)
N1: (70.851,107.757,-2.964)
N3: (69.644,106.236,-1.528)
N6: (69.934,108.800,-4.807)
N7: (67.309,107.341,-4.014)
N9: (67.321,105.948,-2.237)
O5': (63.619,106.288,-2.428)
O3': (64.543,106.202,1.319)
OP2: (63.266,108.475,-3.562)
C3': (65.174,105.979,0.057)
C1': (66.848,104.963,-1.247)
C5': (63.306,105.221,-1.507)
O4': (65.590,104.454,-1.676)
C8: (66.607,106.518,-3.270)
O2': (66.856,104.528,1.119)
C6: (69.783,107.982,-3.760)
C5: (68.571,107.324,-3.433)
C4: (68.591,106.482,-2.330)
P: (62.540,107.386,-2.849)
C4': (64.547,104.838,-0.732)
C2': (66.629,105.541,0.153)
C2: (70.715,106.922,-1.928)
N1: (70.851,107.757,-2.964)
N3: (69.644,106.236,-1.528)
N6: (69.934,108.800,-4.807)
N7: (67.309,107.341,-4.014)
N9: (67.321,105.948,-2.237)
O5': (63.619,106.288,-2.428)
O3': (64.543,106.202,1.319)
Image (generated by PyMOL):