Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQM:0258:0228
Extra
PDB:
ATOM 1 O3' G A 257 78.706 103.621 -0.377 1.00 62.85 O
ATOM 2 P U A 258 77.212 103.612 0.217 1.00 64.14 P
ATOM 3 OP1 U A 258 76.529 102.373 -0.248 1.00 65.92 O
ATOM 4 OP2 U A 258 76.589 104.931 -0.060 1.00 63.42 O
ATOM 5 O5' U A 258 77.457 103.469 1.784 1.00 66.46 O
ATOM 6 C5' U A 258 78.106 102.297 2.315 1.00 68.93 C
ATOM 7 C4' U A 258 78.328 102.440 3.804 1.00 70.58 C
ATOM 8 O4' U A 258 79.426 103.366 4.058 1.00 67.21 O
ATOM 9 C3' U A 258 77.134 102.954 4.608 1.00 72.75 C
ATOM 10 O3' U A 258 77.080 102.292 5.872 1.00 81.46 O
ATOM 11 C2' U A 258 77.487 104.425 4.810 1.00 69.35 C
ATOM 12 O2' U A 258 76.859 104.995 5.942 1.00 67.83 O
ATOM 13 C1' U A 258 79.001 104.327 4.996 1.00 65.53 C
ATOM 14 N1 U A 258 79.808 105.555 4.862 1.00 60.95 N
ATOM 15 C2 U A 258 81.155 105.476 5.198 1.00 57.80 C
ATOM 16 O2 U A 258 81.709 104.436 5.493 1.00 56.48 O
ATOM 17 N3 U A 258 81.830 106.668 5.174 1.00 58.06 N
ATOM 18 C4 U A 258 81.320 107.908 4.852 1.00 58.99 C
ATOM 19 O4 U A 258 82.049 108.902 4.933 1.00 59.20 O
ATOM 20 C5 U A 258 79.944 107.902 4.450 1.00 58.15 C
ATOM 21 C6 U A 258 79.253 106.757 4.465 1.00 58.85 C
ATOM 22 P C A 259 75.676 101.715 6.418 1.00 87.68 P
ATOM 23 OP1 C A 259 74.570 102.612 5.978 1.00 86.41 O
ATOM 24 OP2 C A 259 75.851 101.424 7.863 1.00 88.38 O
ATOM 25 O5' C A 259 75.504 100.322 5.666 1.00 90.85 O
TER
ATOM 1 O3' C B 227 76.599 112.178 4.448 1.00 53.67 O
ATOM 2 P C B 228 78.031 111.823 3.817 1.00 54.79 P
ATOM 3 OP1 C B 228 78.170 112.650 2.593 1.00 58.80 O
ATOM 4 OP2 C B 228 78.197 110.345 3.736 1.00 53.54 O
ATOM 5 O5' C B 228 79.063 112.364 4.904 1.00 54.11 O
ATOM 6 C5' C B 228 80.413 111.892 4.934 1.00 50.59 C
ATOM 7 C4' C B 228 81.012 112.137 6.291 1.00 51.95 C
ATOM 8 O4' C B 228 80.329 111.330 7.288 1.00 51.93 O
ATOM 9 C3' C B 228 82.467 111.732 6.409 1.00 52.66 C
ATOM 10 O3' C B 228 83.298 112.793 5.953 1.00 52.05 O
ATOM 11 C2' C B 228 82.628 111.499 7.905 1.00 52.83 C
ATOM 12 O2' C B 228 82.811 112.706 8.615 1.00 55.18 O
ATOM 13 C1' C B 228 81.262 110.905 8.275 1.00 51.49 C
ATOM 14 N1 C B 228 81.202 109.428 8.400 1.00 48.96 N
ATOM 15 C2 C B 228 82.183 108.754 9.160 1.00 49.23 C
ATOM 16 O2 C B 228 83.081 109.408 9.712 1.00 50.14 O
ATOM 17 N3 C B 228 82.117 107.405 9.274 1.00 48.82 N
ATOM 18 C4 C B 228 81.129 106.731 8.675 1.00 48.68 C
ATOM 19 N4 C B 228 81.107 105.408 8.807 1.00 46.90 N
ATOM 20 C5 C B 228 80.120 107.386 7.909 1.00 47.65 C
ATOM 21 C6 C B 228 80.197 108.719 7.796 1.00 49.76 C
ATOM 22 P A B 229 84.684 112.463 5.223 1.00 52.89 P
ATOM 23 OP1 A B 229 85.458 113.736 5.150 1.00 53.59 O
ATOM 24 OP2 A B 229 84.355 111.726 3.981 1.00 55.02 O
ATOM 25 O5' A B 229 85.441 111.471 6.211 1.00 52.97 O
TER
ATOM 2 P U A 258 77.212 103.612 0.217 1.00 64.14 P
ATOM 3 OP1 U A 258 76.529 102.373 -0.248 1.00 65.92 O
ATOM 4 OP2 U A 258 76.589 104.931 -0.060 1.00 63.42 O
ATOM 5 O5' U A 258 77.457 103.469 1.784 1.00 66.46 O
ATOM 6 C5' U A 258 78.106 102.297 2.315 1.00 68.93 C
ATOM 7 C4' U A 258 78.328 102.440 3.804 1.00 70.58 C
ATOM 8 O4' U A 258 79.426 103.366 4.058 1.00 67.21 O
ATOM 9 C3' U A 258 77.134 102.954 4.608 1.00 72.75 C
ATOM 10 O3' U A 258 77.080 102.292 5.872 1.00 81.46 O
ATOM 11 C2' U A 258 77.487 104.425 4.810 1.00 69.35 C
ATOM 12 O2' U A 258 76.859 104.995 5.942 1.00 67.83 O
ATOM 13 C1' U A 258 79.001 104.327 4.996 1.00 65.53 C
ATOM 14 N1 U A 258 79.808 105.555 4.862 1.00 60.95 N
ATOM 15 C2 U A 258 81.155 105.476 5.198 1.00 57.80 C
ATOM 16 O2 U A 258 81.709 104.436 5.493 1.00 56.48 O
ATOM 17 N3 U A 258 81.830 106.668 5.174 1.00 58.06 N
ATOM 18 C4 U A 258 81.320 107.908 4.852 1.00 58.99 C
ATOM 19 O4 U A 258 82.049 108.902 4.933 1.00 59.20 O
ATOM 20 C5 U A 258 79.944 107.902 4.450 1.00 58.15 C
ATOM 21 C6 U A 258 79.253 106.757 4.465 1.00 58.85 C
ATOM 22 P C A 259 75.676 101.715 6.418 1.00 87.68 P
ATOM 23 OP1 C A 259 74.570 102.612 5.978 1.00 86.41 O
ATOM 24 OP2 C A 259 75.851 101.424 7.863 1.00 88.38 O
ATOM 25 O5' C A 259 75.504 100.322 5.666 1.00 90.85 O
TER
ATOM 1 O3' C B 227 76.599 112.178 4.448 1.00 53.67 O
ATOM 2 P C B 228 78.031 111.823 3.817 1.00 54.79 P
ATOM 3 OP1 C B 228 78.170 112.650 2.593 1.00 58.80 O
ATOM 4 OP2 C B 228 78.197 110.345 3.736 1.00 53.54 O
ATOM 5 O5' C B 228 79.063 112.364 4.904 1.00 54.11 O
ATOM 6 C5' C B 228 80.413 111.892 4.934 1.00 50.59 C
ATOM 7 C4' C B 228 81.012 112.137 6.291 1.00 51.95 C
ATOM 8 O4' C B 228 80.329 111.330 7.288 1.00 51.93 O
ATOM 9 C3' C B 228 82.467 111.732 6.409 1.00 52.66 C
ATOM 10 O3' C B 228 83.298 112.793 5.953 1.00 52.05 O
ATOM 11 C2' C B 228 82.628 111.499 7.905 1.00 52.83 C
ATOM 12 O2' C B 228 82.811 112.706 8.615 1.00 55.18 O
ATOM 13 C1' C B 228 81.262 110.905 8.275 1.00 51.49 C
ATOM 14 N1 C B 228 81.202 109.428 8.400 1.00 48.96 N
ATOM 15 C2 C B 228 82.183 108.754 9.160 1.00 49.23 C
ATOM 16 O2 C B 228 83.081 109.408 9.712 1.00 50.14 O
ATOM 17 N3 C B 228 82.117 107.405 9.274 1.00 48.82 N
ATOM 18 C4 C B 228 81.129 106.731 8.675 1.00 48.68 C
ATOM 19 N4 C B 228 81.107 105.408 8.807 1.00 46.90 N
ATOM 20 C5 C B 228 80.120 107.386 7.909 1.00 47.65 C
ATOM 21 C6 C B 228 80.197 108.719 7.796 1.00 49.76 C
ATOM 22 P A B 229 84.684 112.463 5.223 1.00 52.89 P
ATOM 23 OP1 A B 229 85.458 113.736 5.150 1.00 53.59 O
ATOM 24 OP2 A B 229 84.355 111.726 3.981 1.00 55.02 O
ATOM 25 O5' A B 229 85.441 111.471 6.211 1.00 52.97 O
TER
Atoms:
C4: (81.320,107.908,4.852)
N3: (81.830,106.668,5.174)
OP1: (76.529,102.373,-0.248)
OP2: (76.589,104.931,-0.060)
C2: (81.155,105.476,5.198)
C1': (79.001,104.327,4.996)
C3': (77.134,102.954,4.608)
O5': (77.457,103.469,1.784)
O4': (79.426,103.366,4.058)
C5': (78.106,102.297,2.315)
P: (77.212,103.612,0.217)
C4': (78.328,102.440,3.804)
C2': (77.487,104.425,4.810)
O2': (76.859,104.995,5.942)
N1: (79.808,105.555,4.862)
O4: (82.049,108.902,4.933)
O2: (81.709,104.436,5.493)
C6: (79.253,106.757,4.465)
C5: (79.944,107.902,4.450)
O3': (77.080,102.292,5.872)
N3: (81.830,106.668,5.174)
OP1: (76.529,102.373,-0.248)
OP2: (76.589,104.931,-0.060)
C2: (81.155,105.476,5.198)
C1': (79.001,104.327,4.996)
C3': (77.134,102.954,4.608)
O5': (77.457,103.469,1.784)
O4': (79.426,103.366,4.058)
C5': (78.106,102.297,2.315)
P: (77.212,103.612,0.217)
C4': (78.328,102.440,3.804)
C2': (77.487,104.425,4.810)
O2': (76.859,104.995,5.942)
N1: (79.808,105.555,4.862)
O4: (82.049,108.902,4.933)
O2: (81.709,104.436,5.493)
C6: (79.253,106.757,4.465)
C5: (79.944,107.902,4.450)
O3': (77.080,102.292,5.872)
C2: (82.183,108.754,9.160)
OP1: (78.170,112.650,2.593)
OP2: (78.197,110.345,3.736)
C4: (81.129,106.731,8.675)
O5': (79.063,112.364,4.904)
C3': (82.467,111.732,6.409)
C1': (81.262,110.905,8.275)
O4': (80.329,111.330,7.288)
C5': (80.413,111.892,4.934)
P: (78.031,111.823,3.817)
O2: (83.081,109.408,9.712)
C4': (81.012,112.137,6.291)
C2': (82.628,111.499,7.905)
O2': (82.811,112.706,8.615)
N1: (81.202,109.428,8.400)
N3: (82.117,107.405,9.274)
N4: (81.107,105.408,8.807)
C6: (80.197,108.719,7.796)
C5: (80.120,107.386,7.909)
O3': (83.298,112.793,5.953)
OP1: (78.170,112.650,2.593)
OP2: (78.197,110.345,3.736)
C4: (81.129,106.731,8.675)
O5': (79.063,112.364,4.904)
C3': (82.467,111.732,6.409)
C1': (81.262,110.905,8.275)
O4': (80.329,111.330,7.288)
C5': (80.413,111.892,4.934)
P: (78.031,111.823,3.817)
O2: (83.081,109.408,9.712)
C4': (81.012,112.137,6.291)
C2': (82.628,111.499,7.905)
O2': (82.811,112.706,8.615)
N1: (81.202,109.428,8.400)
N3: (82.117,107.405,9.274)
N4: (81.107,105.408,8.807)
C6: (80.197,108.719,7.796)
C5: (80.120,107.386,7.909)
O3': (83.298,112.793,5.953)
Image (generated by PyMOL):