Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YI2:0272:0273
Extra
PDB:
ATOM 1 O3' U A 271 65.253 104.158 -8.095 1.00143.16 O
ATOM 2 P C A 272 63.886 103.340 -7.859 1.00143.29 P
ATOM 3 OP1 C A 272 64.248 101.897 -7.855 1.00143.60 O
ATOM 4 OP2 C A 272 62.844 103.833 -8.795 1.00142.96 O
ATOM 5 O5' C A 272 63.451 103.740 -6.381 1.00141.90 O
ATOM 6 C5' C A 272 64.173 104.744 -5.649 1.00139.86 C
ATOM 7 C4' C A 272 63.403 106.043 -5.648 1.00138.21 C
ATOM 8 O4' C A 272 63.408 106.639 -6.977 1.00138.37 O
ATOM 9 C3' C A 272 61.936 105.933 -5.234 1.00136.72 C
ATOM 10 O3' C A 272 61.556 107.116 -4.535 1.00133.51 O
ATOM 11 C2' C A 272 61.227 105.911 -6.586 1.00137.16 C
ATOM 12 O2' C A 272 59.876 106.326 -6.527 1.00137.17 O
ATOM 13 C1' C A 272 62.078 106.915 -7.365 1.00137.82 C
ATOM 14 N1 C A 272 61.994 106.913 -8.843 1.00137.97 N
ATOM 15 C2 C A 272 62.770 107.842 -9.566 1.00137.86 C
ATOM 16 O2 C A 272 63.517 108.621 -8.952 1.00137.74 O
ATOM 17 N3 C A 272 62.684 107.865 -10.914 1.00137.82 N
ATOM 18 C4 C A 272 61.872 107.015 -11.546 1.00138.06 C
ATOM 19 N4 C A 272 61.812 107.084 -12.877 1.00137.92 N
ATOM 20 C5 C A 272 61.083 106.058 -10.843 1.00137.88 C
ATOM 21 C6 C A 272 61.173 106.041 -9.507 1.00137.91 C
ATOM 22 P A A 273 62.324 107.541 -3.185 1.00131.34 P
ATOM 23 OP1 A A 273 61.329 107.546 -2.077 1.00131.46 O
ATOM 24 OP2 A A 273 63.083 108.781 -3.501 1.00130.90 O
ATOM 25 O5' A A 273 63.387 106.378 -2.929 1.00127.56 O
TER
ATOM 1 O3' C B 272 61.556 107.116 -4.535 1.00133.51 O
ATOM 2 P A B 273 62.324 107.541 -3.185 1.00131.34 P
ATOM 3 OP1 A B 273 61.329 107.546 -2.077 1.00131.46 O
ATOM 4 OP2 A B 273 63.083 108.781 -3.501 1.00130.90 O
ATOM 5 O5' A B 273 63.387 106.378 -2.929 1.00127.56 O
ATOM 6 C5' A B 273 63.101 105.273 -2.048 1.00121.14 C
ATOM 7 C4' A B 273 64.347 104.889 -1.281 1.00116.44 C
ATOM 8 O4' A B 273 65.383 104.493 -2.224 1.00114.78 O
ATOM 9 C3' A B 273 64.990 106.018 -0.488 1.00113.97 C
ATOM 10 O3' A B 273 64.356 106.226 0.774 1.00111.83 O
ATOM 11 C2' A B 273 66.435 105.549 -0.377 1.00112.70 C
ATOM 12 O2' A B 273 66.623 104.553 0.609 1.00111.64 O
ATOM 13 C1' A B 273 66.653 104.939 -1.765 1.00111.99 C
ATOM 14 N9 A B 273 67.182 105.904 -2.736 1.00109.22 N
ATOM 15 C8 A B 273 66.487 106.592 -3.705 1.00108.25 C
ATOM 16 N7 A B 273 67.232 107.404 -4.415 1.00107.14 N
ATOM 17 C5 A B 273 68.505 107.239 -3.885 1.00106.53 C
ATOM 18 C6 A B 273 69.745 107.825 -4.200 1.00105.63 C
ATOM 19 N6 A B 273 69.915 108.730 -5.168 1.00104.56 N
ATOM 20 N1 A B 273 70.820 107.445 -3.476 1.00105.51 N
ATOM 21 C2 A B 273 70.651 106.538 -2.505 1.00105.60 C
ATOM 22 N3 A B 273 69.541 105.915 -2.116 1.00106.52 N
ATOM 23 C4 A B 273 68.490 106.315 -2.853 1.00107.24 C
ATOM 24 P U B 274 64.100 107.729 1.302 1.00110.20 P
ATOM 25 OP1 U B 274 63.340 107.652 2.579 1.00109.27 O
ATOM 26 OP2 U B 274 63.553 108.529 0.169 1.00108.90 O
ATOM 27 O5' U B 274 65.559 108.277 1.629 1.00107.03 O
TER
ATOM 2 P C A 272 63.886 103.340 -7.859 1.00143.29 P
ATOM 3 OP1 C A 272 64.248 101.897 -7.855 1.00143.60 O
ATOM 4 OP2 C A 272 62.844 103.833 -8.795 1.00142.96 O
ATOM 5 O5' C A 272 63.451 103.740 -6.381 1.00141.90 O
ATOM 6 C5' C A 272 64.173 104.744 -5.649 1.00139.86 C
ATOM 7 C4' C A 272 63.403 106.043 -5.648 1.00138.21 C
ATOM 8 O4' C A 272 63.408 106.639 -6.977 1.00138.37 O
ATOM 9 C3' C A 272 61.936 105.933 -5.234 1.00136.72 C
ATOM 10 O3' C A 272 61.556 107.116 -4.535 1.00133.51 O
ATOM 11 C2' C A 272 61.227 105.911 -6.586 1.00137.16 C
ATOM 12 O2' C A 272 59.876 106.326 -6.527 1.00137.17 O
ATOM 13 C1' C A 272 62.078 106.915 -7.365 1.00137.82 C
ATOM 14 N1 C A 272 61.994 106.913 -8.843 1.00137.97 N
ATOM 15 C2 C A 272 62.770 107.842 -9.566 1.00137.86 C
ATOM 16 O2 C A 272 63.517 108.621 -8.952 1.00137.74 O
ATOM 17 N3 C A 272 62.684 107.865 -10.914 1.00137.82 N
ATOM 18 C4 C A 272 61.872 107.015 -11.546 1.00138.06 C
ATOM 19 N4 C A 272 61.812 107.084 -12.877 1.00137.92 N
ATOM 20 C5 C A 272 61.083 106.058 -10.843 1.00137.88 C
ATOM 21 C6 C A 272 61.173 106.041 -9.507 1.00137.91 C
ATOM 22 P A A 273 62.324 107.541 -3.185 1.00131.34 P
ATOM 23 OP1 A A 273 61.329 107.546 -2.077 1.00131.46 O
ATOM 24 OP2 A A 273 63.083 108.781 -3.501 1.00130.90 O
ATOM 25 O5' A A 273 63.387 106.378 -2.929 1.00127.56 O
TER
ATOM 1 O3' C B 272 61.556 107.116 -4.535 1.00133.51 O
ATOM 2 P A B 273 62.324 107.541 -3.185 1.00131.34 P
ATOM 3 OP1 A B 273 61.329 107.546 -2.077 1.00131.46 O
ATOM 4 OP2 A B 273 63.083 108.781 -3.501 1.00130.90 O
ATOM 5 O5' A B 273 63.387 106.378 -2.929 1.00127.56 O
ATOM 6 C5' A B 273 63.101 105.273 -2.048 1.00121.14 C
ATOM 7 C4' A B 273 64.347 104.889 -1.281 1.00116.44 C
ATOM 8 O4' A B 273 65.383 104.493 -2.224 1.00114.78 O
ATOM 9 C3' A B 273 64.990 106.018 -0.488 1.00113.97 C
ATOM 10 O3' A B 273 64.356 106.226 0.774 1.00111.83 O
ATOM 11 C2' A B 273 66.435 105.549 -0.377 1.00112.70 C
ATOM 12 O2' A B 273 66.623 104.553 0.609 1.00111.64 O
ATOM 13 C1' A B 273 66.653 104.939 -1.765 1.00111.99 C
ATOM 14 N9 A B 273 67.182 105.904 -2.736 1.00109.22 N
ATOM 15 C8 A B 273 66.487 106.592 -3.705 1.00108.25 C
ATOM 16 N7 A B 273 67.232 107.404 -4.415 1.00107.14 N
ATOM 17 C5 A B 273 68.505 107.239 -3.885 1.00106.53 C
ATOM 18 C6 A B 273 69.745 107.825 -4.200 1.00105.63 C
ATOM 19 N6 A B 273 69.915 108.730 -5.168 1.00104.56 N
ATOM 20 N1 A B 273 70.820 107.445 -3.476 1.00105.51 N
ATOM 21 C2 A B 273 70.651 106.538 -2.505 1.00105.60 C
ATOM 22 N3 A B 273 69.541 105.915 -2.116 1.00106.52 N
ATOM 23 C4 A B 273 68.490 106.315 -2.853 1.00107.24 C
ATOM 24 P U B 274 64.100 107.729 1.302 1.00110.20 P
ATOM 25 OP1 U B 274 63.340 107.652 2.579 1.00109.27 O
ATOM 26 OP2 U B 274 63.553 108.529 0.169 1.00108.90 O
ATOM 27 O5' U B 274 65.559 108.277 1.629 1.00107.03 O
TER
Atoms:
C2: (62.770,107.842,-9.566)
OP1: (64.248,101.897,-7.855)
OP2: (62.844,103.833,-8.795)
C4: (61.872,107.015,-11.546)
O5': (63.451,103.740,-6.381)
C3': (61.936,105.933,-5.234)
C1': (62.078,106.915,-7.365)
O4': (63.408,106.639,-6.977)
C5': (64.173,104.744,-5.649)
P: (63.886,103.340,-7.859)
O2: (63.517,108.621,-8.952)
C4': (63.403,106.043,-5.648)
C2': (61.227,105.911,-6.586)
O2': (59.876,106.326,-6.527)
N1: (61.994,106.913,-8.843)
N3: (62.684,107.865,-10.914)
N4: (61.812,107.084,-12.877)
C6: (61.173,106.041,-9.507)
C5: (61.083,106.058,-10.843)
O3': (61.556,107.116,-4.535)
OP1: (64.248,101.897,-7.855)
OP2: (62.844,103.833,-8.795)
C4: (61.872,107.015,-11.546)
O5': (63.451,103.740,-6.381)
C3': (61.936,105.933,-5.234)
C1': (62.078,106.915,-7.365)
O4': (63.408,106.639,-6.977)
C5': (64.173,104.744,-5.649)
P: (63.886,103.340,-7.859)
O2: (63.517,108.621,-8.952)
C4': (63.403,106.043,-5.648)
C2': (61.227,105.911,-6.586)
O2': (59.876,106.326,-6.527)
N1: (61.994,106.913,-8.843)
N3: (62.684,107.865,-10.914)
N4: (61.812,107.084,-12.877)
C6: (61.173,106.041,-9.507)
C5: (61.083,106.058,-10.843)
O3': (61.556,107.116,-4.535)
OP1: (61.329,107.546,-2.077)
OP2: (63.083,108.781,-3.501)
C3': (64.990,106.018,-0.488)
C1': (66.653,104.939,-1.765)
C5': (63.101,105.273,-2.048)
O4': (65.383,104.493,-2.224)
C8: (66.487,106.592,-3.705)
O2': (66.623,104.553,0.609)
C6: (69.745,107.825,-4.200)
C5: (68.505,107.239,-3.885)
C4: (68.490,106.315,-2.853)
P: (62.324,107.541,-3.185)
C4': (64.347,104.889,-1.281)
C2': (66.435,105.549,-0.377)
C2: (70.651,106.538,-2.505)
N1: (70.820,107.445,-3.476)
N3: (69.541,105.915,-2.116)
N6: (69.915,108.730,-5.168)
N7: (67.232,107.404,-4.415)
N9: (67.182,105.904,-2.736)
O5': (63.387,106.378,-2.929)
O3': (64.356,106.226,0.774)
OP2: (63.083,108.781,-3.501)
C3': (64.990,106.018,-0.488)
C1': (66.653,104.939,-1.765)
C5': (63.101,105.273,-2.048)
O4': (65.383,104.493,-2.224)
C8: (66.487,106.592,-3.705)
O2': (66.623,104.553,0.609)
C6: (69.745,107.825,-4.200)
C5: (68.505,107.239,-3.885)
C4: (68.490,106.315,-2.853)
P: (62.324,107.541,-3.185)
C4': (64.347,104.889,-1.281)
C2': (66.435,105.549,-0.377)
C2: (70.651,106.538,-2.505)
N1: (70.820,107.445,-3.476)
N3: (69.541,105.915,-2.116)
N6: (69.915,108.730,-5.168)
N7: (67.232,107.404,-4.415)
N9: (67.182,105.904,-2.736)
O5': (63.387,106.378,-2.929)
O3': (64.356,106.226,0.774)
Image (generated by PyMOL):