Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0272:0273
Extra
PDB:
ATOM 1 O3' U A 271 65.113 104.176 -8.086 1.00138.58 O
ATOM 2 P C A 272 63.659 103.534 -7.836 1.00138.79 P
ATOM 3 OP1 C A 272 63.837 102.058 -7.820 1.00139.03 O
ATOM 4 OP2 C A 272 62.686 104.146 -8.776 1.00138.51 O
ATOM 5 O5' C A 272 63.279 104.000 -6.362 1.00137.47 O
ATOM 6 C5' C A 272 64.017 105.047 -5.710 1.00135.46 C
ATOM 7 C4' C A 272 63.250 106.346 -5.772 1.00133.70 C
ATOM 8 O4' C A 272 63.239 106.863 -7.134 1.00133.94 O
ATOM 9 C3' C A 272 61.789 106.267 -5.332 1.00131.96 C
ATOM 10 O3' C A 272 61.427 107.484 -4.681 1.00128.27 O
ATOM 11 C2' C A 272 61.058 106.190 -6.672 1.00132.70 C
ATOM 12 O2' C A 272 59.711 106.618 -6.610 1.00132.94 O
ATOM 13 C1' C A 272 61.907 107.151 -7.506 1.00133.51 C
ATOM 14 N1 C A 272 61.795 107.106 -8.982 1.00133.96 N
ATOM 15 C2 C A 272 62.607 107.968 -9.750 1.00133.88 C
ATOM 16 O2 C A 272 63.407 108.724 -9.176 1.00133.41 O
ATOM 17 N3 C A 272 62.495 107.953 -11.096 1.00134.22 N
ATOM 18 C4 C A 272 61.627 107.128 -11.685 1.00134.58 C
ATOM 19 N4 C A 272 61.547 107.156 -13.017 1.00134.47 N
ATOM 20 C5 C A 272 60.800 106.239 -10.937 1.00134.34 C
ATOM 21 C6 C A 272 60.915 106.260 -9.603 1.00134.20 C
ATOM 22 P A A 273 62.237 107.979 -3.380 1.00125.52 P
ATOM 23 OP1 A A 273 61.260 108.124 -2.266 1.00125.82 O
ATOM 24 OP2 A A 273 63.053 109.149 -3.801 1.00125.14 O
ATOM 25 O5' A A 273 63.243 106.788 -3.039 1.00121.91 O
TER
ATOM 1 O3' C B 272 61.427 107.484 -4.681 1.00128.27 O
ATOM 2 P A B 273 62.237 107.979 -3.380 1.00125.52 P
ATOM 3 OP1 A B 273 61.260 108.124 -2.266 1.00125.82 O
ATOM 4 OP2 A B 273 63.053 109.149 -3.801 1.00125.14 O
ATOM 5 O5' A B 273 63.243 106.788 -3.039 1.00121.91 O
ATOM 6 C5' A B 273 62.866 105.706 -2.162 1.00115.92 C
ATOM 7 C4' A B 273 64.074 105.227 -1.389 1.00111.58 C
ATOM 8 O4' A B 273 65.099 104.811 -2.334 1.00110.13 O
ATOM 9 C3' A B 273 64.763 106.289 -0.543 1.00109.09 C
ATOM 10 O3' A B 273 64.137 106.455 0.728 1.00106.45 O
ATOM 11 C2' A B 273 66.186 105.754 -0.441 1.00108.12 C
ATOM 12 O2' A B 273 66.325 104.722 0.516 1.00107.48 O
ATOM 13 C1' A B 273 66.384 105.174 -1.844 1.00107.57 C
ATOM 14 N9 A B 273 66.990 106.119 -2.788 1.00104.71 N
ATOM 15 C8 A B 273 66.366 106.843 -3.779 1.00103.79 C
ATOM 16 N7 A B 273 67.177 107.614 -4.462 1.00102.83 N
ATOM 17 C5 A B 273 68.420 107.385 -3.885 1.00102.29 C
ATOM 18 C6 A B 273 69.702 107.905 -4.156 1.00101.42 C
ATOM 19 N6 A B 273 69.957 108.794 -5.120 1.00100.13 N
ATOM 20 N1 A B 273 70.727 107.471 -3.392 1.00100.96 N
ATOM 21 C2 A B 273 70.475 106.578 -2.428 1.00101.08 C
ATOM 22 N3 A B 273 69.320 106.014 -2.080 1.00101.99 N
ATOM 23 C4 A B 273 68.319 106.466 -2.855 1.00102.77 C
ATOM 24 P U B 274 63.993 107.928 1.363 1.00104.46 P
ATOM 25 OP1 U B 274 63.349 107.797 2.696 1.00103.65 O
ATOM 26 OP2 U B 274 63.376 108.808 0.332 1.00103.13 O
ATOM 27 O5' U B 274 65.497 108.404 1.588 1.00101.71 O
TER
ATOM 2 P C A 272 63.659 103.534 -7.836 1.00138.79 P
ATOM 3 OP1 C A 272 63.837 102.058 -7.820 1.00139.03 O
ATOM 4 OP2 C A 272 62.686 104.146 -8.776 1.00138.51 O
ATOM 5 O5' C A 272 63.279 104.000 -6.362 1.00137.47 O
ATOM 6 C5' C A 272 64.017 105.047 -5.710 1.00135.46 C
ATOM 7 C4' C A 272 63.250 106.346 -5.772 1.00133.70 C
ATOM 8 O4' C A 272 63.239 106.863 -7.134 1.00133.94 O
ATOM 9 C3' C A 272 61.789 106.267 -5.332 1.00131.96 C
ATOM 10 O3' C A 272 61.427 107.484 -4.681 1.00128.27 O
ATOM 11 C2' C A 272 61.058 106.190 -6.672 1.00132.70 C
ATOM 12 O2' C A 272 59.711 106.618 -6.610 1.00132.94 O
ATOM 13 C1' C A 272 61.907 107.151 -7.506 1.00133.51 C
ATOM 14 N1 C A 272 61.795 107.106 -8.982 1.00133.96 N
ATOM 15 C2 C A 272 62.607 107.968 -9.750 1.00133.88 C
ATOM 16 O2 C A 272 63.407 108.724 -9.176 1.00133.41 O
ATOM 17 N3 C A 272 62.495 107.953 -11.096 1.00134.22 N
ATOM 18 C4 C A 272 61.627 107.128 -11.685 1.00134.58 C
ATOM 19 N4 C A 272 61.547 107.156 -13.017 1.00134.47 N
ATOM 20 C5 C A 272 60.800 106.239 -10.937 1.00134.34 C
ATOM 21 C6 C A 272 60.915 106.260 -9.603 1.00134.20 C
ATOM 22 P A A 273 62.237 107.979 -3.380 1.00125.52 P
ATOM 23 OP1 A A 273 61.260 108.124 -2.266 1.00125.82 O
ATOM 24 OP2 A A 273 63.053 109.149 -3.801 1.00125.14 O
ATOM 25 O5' A A 273 63.243 106.788 -3.039 1.00121.91 O
TER
ATOM 1 O3' C B 272 61.427 107.484 -4.681 1.00128.27 O
ATOM 2 P A B 273 62.237 107.979 -3.380 1.00125.52 P
ATOM 3 OP1 A B 273 61.260 108.124 -2.266 1.00125.82 O
ATOM 4 OP2 A B 273 63.053 109.149 -3.801 1.00125.14 O
ATOM 5 O5' A B 273 63.243 106.788 -3.039 1.00121.91 O
ATOM 6 C5' A B 273 62.866 105.706 -2.162 1.00115.92 C
ATOM 7 C4' A B 273 64.074 105.227 -1.389 1.00111.58 C
ATOM 8 O4' A B 273 65.099 104.811 -2.334 1.00110.13 O
ATOM 9 C3' A B 273 64.763 106.289 -0.543 1.00109.09 C
ATOM 10 O3' A B 273 64.137 106.455 0.728 1.00106.45 O
ATOM 11 C2' A B 273 66.186 105.754 -0.441 1.00108.12 C
ATOM 12 O2' A B 273 66.325 104.722 0.516 1.00107.48 O
ATOM 13 C1' A B 273 66.384 105.174 -1.844 1.00107.57 C
ATOM 14 N9 A B 273 66.990 106.119 -2.788 1.00104.71 N
ATOM 15 C8 A B 273 66.366 106.843 -3.779 1.00103.79 C
ATOM 16 N7 A B 273 67.177 107.614 -4.462 1.00102.83 N
ATOM 17 C5 A B 273 68.420 107.385 -3.885 1.00102.29 C
ATOM 18 C6 A B 273 69.702 107.905 -4.156 1.00101.42 C
ATOM 19 N6 A B 273 69.957 108.794 -5.120 1.00100.13 N
ATOM 20 N1 A B 273 70.727 107.471 -3.392 1.00100.96 N
ATOM 21 C2 A B 273 70.475 106.578 -2.428 1.00101.08 C
ATOM 22 N3 A B 273 69.320 106.014 -2.080 1.00101.99 N
ATOM 23 C4 A B 273 68.319 106.466 -2.855 1.00102.77 C
ATOM 24 P U B 274 63.993 107.928 1.363 1.00104.46 P
ATOM 25 OP1 U B 274 63.349 107.797 2.696 1.00103.65 O
ATOM 26 OP2 U B 274 63.376 108.808 0.332 1.00103.13 O
ATOM 27 O5' U B 274 65.497 108.404 1.588 1.00101.71 O
TER
Atoms:
C2: (62.607,107.968,-9.750)
OP1: (63.837,102.058,-7.820)
OP2: (62.686,104.146,-8.776)
C4: (61.627,107.128,-11.685)
O5': (63.279,104.000,-6.362)
C3': (61.789,106.267,-5.332)
C1': (61.907,107.151,-7.506)
O4': (63.239,106.863,-7.134)
C5': (64.017,105.047,-5.710)
P: (63.659,103.534,-7.836)
O2: (63.407,108.724,-9.176)
C4': (63.250,106.346,-5.772)
C2': (61.058,106.190,-6.672)
O2': (59.711,106.618,-6.610)
N1: (61.795,107.106,-8.982)
N3: (62.495,107.953,-11.096)
N4: (61.547,107.156,-13.017)
C6: (60.915,106.260,-9.603)
C5: (60.800,106.239,-10.937)
O3': (61.427,107.484,-4.681)
OP1: (63.837,102.058,-7.820)
OP2: (62.686,104.146,-8.776)
C4: (61.627,107.128,-11.685)
O5': (63.279,104.000,-6.362)
C3': (61.789,106.267,-5.332)
C1': (61.907,107.151,-7.506)
O4': (63.239,106.863,-7.134)
C5': (64.017,105.047,-5.710)
P: (63.659,103.534,-7.836)
O2: (63.407,108.724,-9.176)
C4': (63.250,106.346,-5.772)
C2': (61.058,106.190,-6.672)
O2': (59.711,106.618,-6.610)
N1: (61.795,107.106,-8.982)
N3: (62.495,107.953,-11.096)
N4: (61.547,107.156,-13.017)
C6: (60.915,106.260,-9.603)
C5: (60.800,106.239,-10.937)
O3': (61.427,107.484,-4.681)
OP1: (61.260,108.124,-2.266)
OP2: (63.053,109.149,-3.801)
C3': (64.763,106.289,-0.543)
C1': (66.384,105.174,-1.844)
C5': (62.866,105.706,-2.162)
O4': (65.099,104.811,-2.334)
C8: (66.366,106.843,-3.779)
O2': (66.325,104.722,0.516)
C6: (69.702,107.905,-4.156)
C5: (68.420,107.385,-3.885)
C4: (68.319,106.466,-2.855)
P: (62.237,107.979,-3.380)
C4': (64.074,105.227,-1.389)
C2': (66.186,105.754,-0.441)
C2: (70.475,106.578,-2.428)
N1: (70.727,107.471,-3.392)
N3: (69.320,106.014,-2.080)
N6: (69.957,108.794,-5.120)
N7: (67.177,107.614,-4.462)
N9: (66.990,106.119,-2.788)
O5': (63.243,106.788,-3.039)
O3': (64.137,106.455,0.728)
OP2: (63.053,109.149,-3.801)
C3': (64.763,106.289,-0.543)
C1': (66.384,105.174,-1.844)
C5': (62.866,105.706,-2.162)
O4': (65.099,104.811,-2.334)
C8: (66.366,106.843,-3.779)
O2': (66.325,104.722,0.516)
C6: (69.702,107.905,-4.156)
C5: (68.420,107.385,-3.885)
C4: (68.319,106.466,-2.855)
P: (62.237,107.979,-3.380)
C4': (64.074,105.227,-1.389)
C2': (66.186,105.754,-0.441)
C2: (70.475,106.578,-2.428)
N1: (70.727,107.471,-3.392)
N3: (69.320,106.014,-2.080)
N6: (69.957,108.794,-5.120)
N7: (67.177,107.614,-4.462)
N9: (66.990,106.119,-2.788)
O5': (63.243,106.788,-3.039)
O3': (64.137,106.455,0.728)
Image (generated by PyMOL):