Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0272:0273
Extra
PDB:
ATOM 1 O3' U A 271 65.018 103.970 -8.084 1.00140.82 O
ATOM 2 P C A 272 63.542 103.384 -7.824 1.00140.78 P
ATOM 3 OP1 C A 272 63.678 101.909 -7.700 1.00141.30 O
ATOM 4 OP2 C A 272 62.602 103.952 -8.822 1.00140.40 O
ATOM 5 O5' C A 272 63.147 103.953 -6.392 1.00139.50 O
ATOM 6 C5' C A 272 64.015 104.863 -5.702 1.00137.75 C
ATOM 7 C4' C A 272 63.452 106.261 -5.760 1.00136.26 C
ATOM 8 O4' C A 272 63.508 106.771 -7.126 1.00136.64 O
ATOM 9 C3' C A 272 62.000 106.397 -5.317 1.00134.84 C
ATOM 10 O3' C A 272 61.866 107.630 -4.630 1.00131.79 O
ATOM 11 C2' C A 272 61.247 106.427 -6.644 1.00135.35 C
ATOM 12 O2' C A 272 59.990 107.071 -6.573 1.00135.71 O
ATOM 13 C1' C A 272 62.223 107.219 -7.514 1.00135.90 C
ATOM 14 N1 C A 272 62.085 107.077 -8.982 1.00135.71 N
ATOM 15 C2 C A 272 62.947 107.812 -9.817 1.00135.35 C
ATOM 16 O2 C A 272 63.800 108.552 -9.307 1.00134.56 O
ATOM 17 N3 C A 272 62.825 107.696 -11.156 1.00135.48 N
ATOM 18 C4 C A 272 61.900 106.887 -11.676 1.00135.88 C
ATOM 19 N4 C A 272 61.825 106.798 -13.006 1.00136.13 N
ATOM 20 C5 C A 272 61.012 106.132 -10.858 1.00135.74 C
ATOM 21 C6 C A 272 61.137 106.255 -9.531 1.00135.80 C
ATOM 22 P A A 273 62.061 107.669 -3.039 1.00129.72 P
ATOM 23 OP1 A A 273 60.806 107.154 -2.424 1.00129.94 O
ATOM 24 OP2 A A 273 62.559 109.019 -2.670 1.00130.44 O
ATOM 25 O5' A A 273 63.237 106.622 -2.782 1.00125.58 O
TER
ATOM 1 O3' C B 272 61.866 107.630 -4.630 1.00131.79 O
ATOM 2 P A B 273 62.061 107.669 -3.039 1.00129.72 P
ATOM 3 OP1 A B 273 60.806 107.154 -2.424 1.00129.94 O
ATOM 4 OP2 A B 273 62.559 109.019 -2.670 1.00130.44 O
ATOM 5 O5' A B 273 63.237 106.622 -2.782 1.00125.58 O
ATOM 6 C5' A B 273 63.002 105.399 -2.057 1.00118.53 C
ATOM 7 C4' A B 273 64.267 104.960 -1.357 1.00113.40 C
ATOM 8 O4' A B 273 65.264 104.596 -2.350 1.00111.60 O
ATOM 9 C3' A B 273 64.952 106.031 -0.522 1.00110.63 C
ATOM 10 O3' A B 273 64.358 106.179 0.766 1.00107.34 O
ATOM 11 C2' A B 273 66.388 105.526 -0.470 1.00109.76 C
ATOM 12 O2' A B 273 66.579 104.493 0.475 1.00109.57 O
ATOM 13 C1' A B 273 66.557 104.962 -1.885 1.00109.06 C
ATOM 14 N9 A B 273 67.132 105.929 -2.826 1.00106.41 N
ATOM 15 C8 A B 273 66.485 106.662 -3.795 1.00105.40 C
ATOM 16 N7 A B 273 67.276 107.462 -4.469 1.00104.07 N
ATOM 17 C5 A B 273 68.528 107.240 -3.912 1.00103.76 C
ATOM 18 C6 A B 273 69.797 107.787 -4.182 1.00102.79 C
ATOM 19 N6 A B 273 70.023 108.710 -5.122 1.00101.58 N
ATOM 20 N1 A B 273 70.840 107.350 -3.443 1.00102.36 N
ATOM 21 C2 A B 273 70.614 106.428 -2.499 1.00102.31 C
ATOM 22 N3 A B 273 69.472 105.839 -2.151 1.00103.08 N
ATOM 23 C4 A B 273 68.455 106.294 -2.903 1.00104.40 C
ATOM 24 P U B 274 64.184 107.648 1.401 1.00104.78 P
ATOM 25 OP1 U B 274 63.554 107.496 2.737 1.00104.70 O
ATOM 26 OP2 U B 274 63.541 108.518 0.380 1.00103.59 O
ATOM 27 O5' U B 274 65.678 108.154 1.620 1.00102.33 O
TER
ATOM 2 P C A 272 63.542 103.384 -7.824 1.00140.78 P
ATOM 3 OP1 C A 272 63.678 101.909 -7.700 1.00141.30 O
ATOM 4 OP2 C A 272 62.602 103.952 -8.822 1.00140.40 O
ATOM 5 O5' C A 272 63.147 103.953 -6.392 1.00139.50 O
ATOM 6 C5' C A 272 64.015 104.863 -5.702 1.00137.75 C
ATOM 7 C4' C A 272 63.452 106.261 -5.760 1.00136.26 C
ATOM 8 O4' C A 272 63.508 106.771 -7.126 1.00136.64 O
ATOM 9 C3' C A 272 62.000 106.397 -5.317 1.00134.84 C
ATOM 10 O3' C A 272 61.866 107.630 -4.630 1.00131.79 O
ATOM 11 C2' C A 272 61.247 106.427 -6.644 1.00135.35 C
ATOM 12 O2' C A 272 59.990 107.071 -6.573 1.00135.71 O
ATOM 13 C1' C A 272 62.223 107.219 -7.514 1.00135.90 C
ATOM 14 N1 C A 272 62.085 107.077 -8.982 1.00135.71 N
ATOM 15 C2 C A 272 62.947 107.812 -9.817 1.00135.35 C
ATOM 16 O2 C A 272 63.800 108.552 -9.307 1.00134.56 O
ATOM 17 N3 C A 272 62.825 107.696 -11.156 1.00135.48 N
ATOM 18 C4 C A 272 61.900 106.887 -11.676 1.00135.88 C
ATOM 19 N4 C A 272 61.825 106.798 -13.006 1.00136.13 N
ATOM 20 C5 C A 272 61.012 106.132 -10.858 1.00135.74 C
ATOM 21 C6 C A 272 61.137 106.255 -9.531 1.00135.80 C
ATOM 22 P A A 273 62.061 107.669 -3.039 1.00129.72 P
ATOM 23 OP1 A A 273 60.806 107.154 -2.424 1.00129.94 O
ATOM 24 OP2 A A 273 62.559 109.019 -2.670 1.00130.44 O
ATOM 25 O5' A A 273 63.237 106.622 -2.782 1.00125.58 O
TER
ATOM 1 O3' C B 272 61.866 107.630 -4.630 1.00131.79 O
ATOM 2 P A B 273 62.061 107.669 -3.039 1.00129.72 P
ATOM 3 OP1 A B 273 60.806 107.154 -2.424 1.00129.94 O
ATOM 4 OP2 A B 273 62.559 109.019 -2.670 1.00130.44 O
ATOM 5 O5' A B 273 63.237 106.622 -2.782 1.00125.58 O
ATOM 6 C5' A B 273 63.002 105.399 -2.057 1.00118.53 C
ATOM 7 C4' A B 273 64.267 104.960 -1.357 1.00113.40 C
ATOM 8 O4' A B 273 65.264 104.596 -2.350 1.00111.60 O
ATOM 9 C3' A B 273 64.952 106.031 -0.522 1.00110.63 C
ATOM 10 O3' A B 273 64.358 106.179 0.766 1.00107.34 O
ATOM 11 C2' A B 273 66.388 105.526 -0.470 1.00109.76 C
ATOM 12 O2' A B 273 66.579 104.493 0.475 1.00109.57 O
ATOM 13 C1' A B 273 66.557 104.962 -1.885 1.00109.06 C
ATOM 14 N9 A B 273 67.132 105.929 -2.826 1.00106.41 N
ATOM 15 C8 A B 273 66.485 106.662 -3.795 1.00105.40 C
ATOM 16 N7 A B 273 67.276 107.462 -4.469 1.00104.07 N
ATOM 17 C5 A B 273 68.528 107.240 -3.912 1.00103.76 C
ATOM 18 C6 A B 273 69.797 107.787 -4.182 1.00102.79 C
ATOM 19 N6 A B 273 70.023 108.710 -5.122 1.00101.58 N
ATOM 20 N1 A B 273 70.840 107.350 -3.443 1.00102.36 N
ATOM 21 C2 A B 273 70.614 106.428 -2.499 1.00102.31 C
ATOM 22 N3 A B 273 69.472 105.839 -2.151 1.00103.08 N
ATOM 23 C4 A B 273 68.455 106.294 -2.903 1.00104.40 C
ATOM 24 P U B 274 64.184 107.648 1.401 1.00104.78 P
ATOM 25 OP1 U B 274 63.554 107.496 2.737 1.00104.70 O
ATOM 26 OP2 U B 274 63.541 108.518 0.380 1.00103.59 O
ATOM 27 O5' U B 274 65.678 108.154 1.620 1.00102.33 O
TER
Atoms:
C2: (62.947,107.812,-9.817)
OP1: (63.678,101.909,-7.700)
OP2: (62.602,103.952,-8.822)
C4: (61.900,106.887,-11.676)
O5': (63.147,103.953,-6.392)
C3': (62.000,106.397,-5.317)
C1': (62.223,107.219,-7.514)
O4': (63.508,106.771,-7.126)
C5': (64.015,104.863,-5.702)
P: (63.542,103.384,-7.824)
O2: (63.800,108.552,-9.307)
C4': (63.452,106.261,-5.760)
C2': (61.247,106.427,-6.644)
O2': (59.990,107.071,-6.573)
N1: (62.085,107.077,-8.982)
N3: (62.825,107.696,-11.156)
N4: (61.825,106.798,-13.006)
C6: (61.137,106.255,-9.531)
C5: (61.012,106.132,-10.858)
O3': (61.866,107.630,-4.630)
OP1: (63.678,101.909,-7.700)
OP2: (62.602,103.952,-8.822)
C4: (61.900,106.887,-11.676)
O5': (63.147,103.953,-6.392)
C3': (62.000,106.397,-5.317)
C1': (62.223,107.219,-7.514)
O4': (63.508,106.771,-7.126)
C5': (64.015,104.863,-5.702)
P: (63.542,103.384,-7.824)
O2: (63.800,108.552,-9.307)
C4': (63.452,106.261,-5.760)
C2': (61.247,106.427,-6.644)
O2': (59.990,107.071,-6.573)
N1: (62.085,107.077,-8.982)
N3: (62.825,107.696,-11.156)
N4: (61.825,106.798,-13.006)
C6: (61.137,106.255,-9.531)
C5: (61.012,106.132,-10.858)
O3': (61.866,107.630,-4.630)
OP1: (60.806,107.154,-2.424)
OP2: (62.559,109.019,-2.670)
C3': (64.952,106.031,-0.522)
C1': (66.557,104.962,-1.885)
C5': (63.002,105.399,-2.057)
O4': (65.264,104.596,-2.350)
C8: (66.485,106.662,-3.795)
O2': (66.579,104.493,0.475)
C6: (69.797,107.787,-4.182)
C5: (68.528,107.240,-3.912)
C4: (68.455,106.294,-2.903)
P: (62.061,107.669,-3.039)
C4': (64.267,104.960,-1.357)
C2': (66.388,105.526,-0.470)
C2: (70.614,106.428,-2.499)
N1: (70.840,107.350,-3.443)
N3: (69.472,105.839,-2.151)
N6: (70.023,108.710,-5.122)
N7: (67.276,107.462,-4.469)
N9: (67.132,105.929,-2.826)
O5': (63.237,106.622,-2.782)
O3': (64.358,106.179,0.766)
OP2: (62.559,109.019,-2.670)
C3': (64.952,106.031,-0.522)
C1': (66.557,104.962,-1.885)
C5': (63.002,105.399,-2.057)
O4': (65.264,104.596,-2.350)
C8: (66.485,106.662,-3.795)
O2': (66.579,104.493,0.475)
C6: (69.797,107.787,-4.182)
C5: (68.528,107.240,-3.912)
C4: (68.455,106.294,-2.903)
P: (62.061,107.669,-3.039)
C4': (64.267,104.960,-1.357)
C2': (66.388,105.526,-0.470)
C2: (70.614,106.428,-2.499)
N1: (70.840,107.350,-3.443)
N3: (69.472,105.839,-2.151)
N6: (70.023,108.710,-5.122)
N7: (67.276,107.462,-4.469)
N9: (67.132,105.929,-2.826)
O5': (63.237,106.622,-2.782)
O3': (64.358,106.179,0.766)
Image (generated by PyMOL):