Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0272:0273
Extra
PDB:
ATOM 1 O3' U A 271 65.168 104.318 -7.974 1.00152.54 O
ATOM 2 P C A 272 63.721 103.644 -7.741 1.00152.18 P
ATOM 3 OP1 C A 272 63.945 102.176 -7.659 1.00152.60 O
ATOM 4 OP2 C A 272 62.758 104.185 -8.735 1.00151.41 O
ATOM 5 O5' C A 272 63.283 104.149 -6.294 1.00150.66 O
ATOM 6 C5' C A 272 64.140 105.013 -5.528 1.00148.77 C
ATOM 7 C4' C A 272 63.628 106.433 -5.581 1.00147.58 C
ATOM 8 O4' C A 272 63.591 106.886 -6.967 1.00147.88 O
ATOM 9 C3' C A 272 62.223 106.651 -5.030 1.00146.35 C
ATOM 10 O3' C A 272 62.171 107.938 -4.425 1.00143.30 O
ATOM 11 C2' C A 272 61.362 106.620 -6.291 1.00147.07 C
ATOM 12 O2' C A 272 60.128 107.300 -6.150 1.00147.34 O
ATOM 13 C1' C A 272 62.282 107.324 -7.292 1.00147.59 C
ATOM 14 N1 C A 272 62.026 107.061 -8.732 1.00147.77 N
ATOM 15 C2 C A 272 62.947 107.539 -9.690 1.00147.54 C
ATOM 16 O2 C A 272 63.957 108.159 -9.311 1.00147.09 O
ATOM 17 N3 C A 272 62.709 107.313 -11.003 1.00147.34 N
ATOM 18 C4 C A 272 61.617 106.645 -11.382 1.00147.43 C
ATOM 19 N4 C A 272 61.429 106.447 -12.689 1.00147.25 N
ATOM 20 C5 C A 272 60.669 106.150 -10.438 1.00147.44 C
ATOM 21 C6 C A 272 60.910 106.376 -9.139 1.00147.75 C
ATOM 22 P A A 273 62.371 108.076 -2.839 1.00140.95 P
ATOM 23 OP1 A A 273 61.084 107.700 -2.189 1.00141.29 O
ATOM 24 OP2 A A 273 62.962 109.415 -2.575 1.00141.10 O
ATOM 25 O5' A A 273 63.475 106.974 -2.503 1.00137.19 O
TER
ATOM 1 O3' C B 272 62.171 107.938 -4.425 1.00143.30 O
ATOM 2 P A B 273 62.371 108.076 -2.839 1.00140.95 P
ATOM 3 OP1 A B 273 61.084 107.700 -2.189 1.00141.29 O
ATOM 4 OP2 A B 273 62.962 109.415 -2.575 1.00141.10 O
ATOM 5 O5' A B 273 63.475 106.974 -2.503 1.00137.19 O
ATOM 6 C5' A B 273 63.152 105.789 -1.742 1.00130.66 C
ATOM 7 C4' A B 273 64.379 105.298 -1.008 1.00126.12 C
ATOM 8 O4' A B 273 65.376 104.868 -1.975 1.00124.40 O
ATOM 9 C3' A B 273 65.087 106.359 -0.180 1.00123.52 C
ATOM 10 O3' A B 273 64.484 106.523 1.104 1.00121.28 O
ATOM 11 C2' A B 273 66.517 105.834 -0.128 1.00122.30 C
ATOM 12 O2' A B 273 66.695 104.804 0.821 1.00121.58 O
ATOM 13 C1' A B 273 66.671 105.252 -1.537 1.00121.87 C
ATOM 14 N9 A B 273 67.218 106.199 -2.515 1.00119.92 N
ATOM 15 C8 A B 273 66.520 106.933 -3.447 1.00119.38 C
ATOM 16 N7 A B 273 67.278 107.697 -4.194 1.00118.47 N
ATOM 17 C5 A B 273 68.561 107.454 -3.727 1.00117.58 C
ATOM 18 C6 A B 273 69.817 107.961 -4.107 1.00116.72 C
ATOM 19 N6 A B 273 69.995 108.847 -5.091 1.00115.35 N
ATOM 20 N1 A B 273 70.900 107.522 -3.432 1.00116.70 N
ATOM 21 C2 A B 273 70.724 106.631 -2.448 1.00116.89 C
ATOM 22 N3 A B 273 69.599 106.075 -2.004 1.00117.56 N
ATOM 23 C4 A B 273 68.540 106.535 -2.691 1.00118.06 C
ATOM 24 P U B 274 64.184 108.004 1.664 1.00119.78 P
ATOM 25 OP1 U B 274 63.469 107.876 2.965 1.00119.34 O
ATOM 26 OP2 U B 274 63.564 108.791 0.561 1.00118.86 O
ATOM 27 O5' U B 274 65.631 108.610 1.945 1.00116.49 O
TER
ATOM 2 P C A 272 63.721 103.644 -7.741 1.00152.18 P
ATOM 3 OP1 C A 272 63.945 102.176 -7.659 1.00152.60 O
ATOM 4 OP2 C A 272 62.758 104.185 -8.735 1.00151.41 O
ATOM 5 O5' C A 272 63.283 104.149 -6.294 1.00150.66 O
ATOM 6 C5' C A 272 64.140 105.013 -5.528 1.00148.77 C
ATOM 7 C4' C A 272 63.628 106.433 -5.581 1.00147.58 C
ATOM 8 O4' C A 272 63.591 106.886 -6.967 1.00147.88 O
ATOM 9 C3' C A 272 62.223 106.651 -5.030 1.00146.35 C
ATOM 10 O3' C A 272 62.171 107.938 -4.425 1.00143.30 O
ATOM 11 C2' C A 272 61.362 106.620 -6.291 1.00147.07 C
ATOM 12 O2' C A 272 60.128 107.300 -6.150 1.00147.34 O
ATOM 13 C1' C A 272 62.282 107.324 -7.292 1.00147.59 C
ATOM 14 N1 C A 272 62.026 107.061 -8.732 1.00147.77 N
ATOM 15 C2 C A 272 62.947 107.539 -9.690 1.00147.54 C
ATOM 16 O2 C A 272 63.957 108.159 -9.311 1.00147.09 O
ATOM 17 N3 C A 272 62.709 107.313 -11.003 1.00147.34 N
ATOM 18 C4 C A 272 61.617 106.645 -11.382 1.00147.43 C
ATOM 19 N4 C A 272 61.429 106.447 -12.689 1.00147.25 N
ATOM 20 C5 C A 272 60.669 106.150 -10.438 1.00147.44 C
ATOM 21 C6 C A 272 60.910 106.376 -9.139 1.00147.75 C
ATOM 22 P A A 273 62.371 108.076 -2.839 1.00140.95 P
ATOM 23 OP1 A A 273 61.084 107.700 -2.189 1.00141.29 O
ATOM 24 OP2 A A 273 62.962 109.415 -2.575 1.00141.10 O
ATOM 25 O5' A A 273 63.475 106.974 -2.503 1.00137.19 O
TER
ATOM 1 O3' C B 272 62.171 107.938 -4.425 1.00143.30 O
ATOM 2 P A B 273 62.371 108.076 -2.839 1.00140.95 P
ATOM 3 OP1 A B 273 61.084 107.700 -2.189 1.00141.29 O
ATOM 4 OP2 A B 273 62.962 109.415 -2.575 1.00141.10 O
ATOM 5 O5' A B 273 63.475 106.974 -2.503 1.00137.19 O
ATOM 6 C5' A B 273 63.152 105.789 -1.742 1.00130.66 C
ATOM 7 C4' A B 273 64.379 105.298 -1.008 1.00126.12 C
ATOM 8 O4' A B 273 65.376 104.868 -1.975 1.00124.40 O
ATOM 9 C3' A B 273 65.087 106.359 -0.180 1.00123.52 C
ATOM 10 O3' A B 273 64.484 106.523 1.104 1.00121.28 O
ATOM 11 C2' A B 273 66.517 105.834 -0.128 1.00122.30 C
ATOM 12 O2' A B 273 66.695 104.804 0.821 1.00121.58 O
ATOM 13 C1' A B 273 66.671 105.252 -1.537 1.00121.87 C
ATOM 14 N9 A B 273 67.218 106.199 -2.515 1.00119.92 N
ATOM 15 C8 A B 273 66.520 106.933 -3.447 1.00119.38 C
ATOM 16 N7 A B 273 67.278 107.697 -4.194 1.00118.47 N
ATOM 17 C5 A B 273 68.561 107.454 -3.727 1.00117.58 C
ATOM 18 C6 A B 273 69.817 107.961 -4.107 1.00116.72 C
ATOM 19 N6 A B 273 69.995 108.847 -5.091 1.00115.35 N
ATOM 20 N1 A B 273 70.900 107.522 -3.432 1.00116.70 N
ATOM 21 C2 A B 273 70.724 106.631 -2.448 1.00116.89 C
ATOM 22 N3 A B 273 69.599 106.075 -2.004 1.00117.56 N
ATOM 23 C4 A B 273 68.540 106.535 -2.691 1.00118.06 C
ATOM 24 P U B 274 64.184 108.004 1.664 1.00119.78 P
ATOM 25 OP1 U B 274 63.469 107.876 2.965 1.00119.34 O
ATOM 26 OP2 U B 274 63.564 108.791 0.561 1.00118.86 O
ATOM 27 O5' U B 274 65.631 108.610 1.945 1.00116.49 O
TER
Atoms:
C2: (62.947,107.539,-9.690)
OP1: (63.945,102.176,-7.659)
OP2: (62.758,104.185,-8.735)
C4: (61.617,106.645,-11.382)
O5': (63.283,104.149,-6.294)
C3': (62.223,106.651,-5.030)
C1': (62.282,107.324,-7.292)
O4': (63.591,106.886,-6.967)
C5': (64.140,105.013,-5.528)
P: (63.721,103.644,-7.741)
O2: (63.957,108.159,-9.311)
C4': (63.628,106.433,-5.581)
C2': (61.362,106.620,-6.291)
O2': (60.128,107.300,-6.150)
N1: (62.026,107.061,-8.732)
N3: (62.709,107.313,-11.003)
N4: (61.429,106.447,-12.689)
C6: (60.910,106.376,-9.139)
C5: (60.669,106.150,-10.438)
O3': (62.171,107.938,-4.425)
OP1: (63.945,102.176,-7.659)
OP2: (62.758,104.185,-8.735)
C4: (61.617,106.645,-11.382)
O5': (63.283,104.149,-6.294)
C3': (62.223,106.651,-5.030)
C1': (62.282,107.324,-7.292)
O4': (63.591,106.886,-6.967)
C5': (64.140,105.013,-5.528)
P: (63.721,103.644,-7.741)
O2: (63.957,108.159,-9.311)
C4': (63.628,106.433,-5.581)
C2': (61.362,106.620,-6.291)
O2': (60.128,107.300,-6.150)
N1: (62.026,107.061,-8.732)
N3: (62.709,107.313,-11.003)
N4: (61.429,106.447,-12.689)
C6: (60.910,106.376,-9.139)
C5: (60.669,106.150,-10.438)
O3': (62.171,107.938,-4.425)
OP1: (61.084,107.700,-2.189)
OP2: (62.962,109.415,-2.575)
C3': (65.087,106.359,-0.180)
C1': (66.671,105.252,-1.537)
C5': (63.152,105.789,-1.742)
O4': (65.376,104.868,-1.975)
C8: (66.520,106.933,-3.447)
O2': (66.695,104.804,0.821)
C6: (69.817,107.961,-4.107)
C5: (68.561,107.454,-3.727)
C4: (68.540,106.535,-2.691)
P: (62.371,108.076,-2.839)
C4': (64.379,105.298,-1.008)
C2': (66.517,105.834,-0.128)
C2: (70.724,106.631,-2.448)
N1: (70.900,107.522,-3.432)
N3: (69.599,106.075,-2.004)
N6: (69.995,108.847,-5.091)
N7: (67.278,107.697,-4.194)
N9: (67.218,106.199,-2.515)
O5': (63.475,106.974,-2.503)
O3': (64.484,106.523,1.104)
OP2: (62.962,109.415,-2.575)
C3': (65.087,106.359,-0.180)
C1': (66.671,105.252,-1.537)
C5': (63.152,105.789,-1.742)
O4': (65.376,104.868,-1.975)
C8: (66.520,106.933,-3.447)
O2': (66.695,104.804,0.821)
C6: (69.817,107.961,-4.107)
C5: (68.561,107.454,-3.727)
C4: (68.540,106.535,-2.691)
P: (62.371,108.076,-2.839)
C4': (64.379,105.298,-1.008)
C2': (66.517,105.834,-0.128)
C2: (70.724,106.631,-2.448)
N1: (70.900,107.522,-3.432)
N3: (69.599,106.075,-2.004)
N6: (69.995,108.847,-5.091)
N7: (67.278,107.697,-4.194)
N9: (67.218,106.199,-2.515)
O5': (63.475,106.974,-2.503)
O3': (64.484,106.523,1.104)
Image (generated by PyMOL):