Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0272:0273
Extra
PDB:
ATOM 1 O3' U A 271 65.393 104.160 -8.066 1.00146.33 O
ATOM 2 P C A 272 64.005 103.409 -7.753 1.00146.90 P
ATOM 3 OP1 C A 272 64.299 101.948 -7.749 1.00147.05 O
ATOM 4 OP2 C A 272 62.949 103.943 -8.652 1.00146.45 O
ATOM 5 O5' C A 272 63.651 103.847 -6.264 1.00145.40 O
ATOM 6 C5' C A 272 64.342 104.938 -5.631 1.00142.73 C
ATOM 7 C4' C A 272 63.490 106.184 -5.659 1.00140.36 C
ATOM 8 O4' C A 272 63.430 106.722 -7.010 1.00140.47 O
ATOM 9 C3' C A 272 62.042 106.002 -5.204 1.00138.22 C
ATOM 10 O3' C A 272 61.589 107.182 -4.538 1.00134.16 O
ATOM 11 C2' C A 272 61.306 105.889 -6.539 1.00138.88 C
ATOM 12 O2' C A 272 59.934 106.221 -6.453 1.00139.17 O
ATOM 13 C1' C A 272 62.079 106.917 -7.369 1.00139.97 C
ATOM 14 N1 C A 272 61.966 106.887 -8.845 1.00140.42 N
ATOM 15 C2 C A 272 62.722 107.810 -9.598 1.00140.55 C
ATOM 16 O2 C A 272 63.469 108.609 -9.011 1.00140.32 O
ATOM 17 N3 C A 272 62.616 107.806 -10.944 1.00140.78 N
ATOM 18 C4 C A 272 61.807 106.936 -11.548 1.00141.05 C
ATOM 19 N4 C A 272 61.735 106.974 -12.880 1.00141.12 N
ATOM 20 C5 C A 272 61.034 105.988 -10.815 1.00140.82 C
ATOM 21 C6 C A 272 61.143 105.998 -9.480 1.00140.60 C
ATOM 22 P A A 273 62.471 107.841 -3.361 1.00131.00 P
ATOM 23 OP1 A A 273 61.566 108.088 -2.205 1.00131.47 O
ATOM 24 OP2 A A 273 63.220 108.978 -3.966 1.00130.24 O
ATOM 25 O5' A A 273 63.531 106.719 -2.958 1.00126.69 O
TER
ATOM 1 O3' C B 272 61.589 107.182 -4.538 1.00134.16 O
ATOM 2 P A B 273 62.471 107.841 -3.361 1.00131.00 P
ATOM 3 OP1 A B 273 61.566 108.088 -2.205 1.00131.47 O
ATOM 4 OP2 A B 273 63.220 108.978 -3.966 1.00130.24 O
ATOM 5 O5' A B 273 63.531 106.719 -2.958 1.00126.69 O
ATOM 6 C5' A B 273 63.168 105.597 -2.130 1.00119.98 C
ATOM 7 C4' A B 273 64.377 105.111 -1.361 1.00115.55 C
ATOM 8 O4' A B 273 65.407 104.704 -2.305 1.00114.16 O
ATOM 9 C3' A B 273 65.065 106.162 -0.501 1.00112.45 C
ATOM 10 O3' A B 273 64.424 106.334 0.760 1.00108.89 O
ATOM 11 C2' A B 273 66.482 105.613 -0.393 1.00111.64 C
ATOM 12 O2' A B 273 66.603 104.552 0.535 1.00110.10 O
ATOM 13 C1' A B 273 66.691 105.068 -1.808 1.00111.48 C
ATOM 14 N9 A B 273 67.278 106.050 -2.727 1.00109.54 N
ATOM 15 C8 A B 273 66.630 106.791 -3.691 1.00108.81 C
ATOM 16 N7 A B 273 67.420 107.588 -4.366 1.00107.84 N
ATOM 17 C5 A B 273 68.673 107.362 -3.814 1.00107.16 C
ATOM 18 C6 A B 273 69.940 107.903 -4.094 1.00106.38 C
ATOM 19 N6 A B 273 70.164 108.813 -5.045 1.00105.52 N
ATOM 20 N1 A B 273 70.983 107.470 -3.355 1.00106.02 N
ATOM 21 C2 A B 273 70.759 106.555 -2.405 1.00106.17 C
ATOM 22 N3 A B 273 69.619 105.969 -2.051 1.00107.03 N
ATOM 23 C4 A B 273 68.601 106.420 -2.802 1.00107.74 C
ATOM 24 P U B 274 64.189 107.816 1.340 1.00105.87 P
ATOM 25 OP1 U B 274 63.490 107.686 2.644 1.00105.63 O
ATOM 26 OP2 U B 274 63.583 108.639 0.261 1.00104.81 O
ATOM 27 O5' U B 274 65.659 108.364 1.617 1.00103.77 O
TER
ATOM 2 P C A 272 64.005 103.409 -7.753 1.00146.90 P
ATOM 3 OP1 C A 272 64.299 101.948 -7.749 1.00147.05 O
ATOM 4 OP2 C A 272 62.949 103.943 -8.652 1.00146.45 O
ATOM 5 O5' C A 272 63.651 103.847 -6.264 1.00145.40 O
ATOM 6 C5' C A 272 64.342 104.938 -5.631 1.00142.73 C
ATOM 7 C4' C A 272 63.490 106.184 -5.659 1.00140.36 C
ATOM 8 O4' C A 272 63.430 106.722 -7.010 1.00140.47 O
ATOM 9 C3' C A 272 62.042 106.002 -5.204 1.00138.22 C
ATOM 10 O3' C A 272 61.589 107.182 -4.538 1.00134.16 O
ATOM 11 C2' C A 272 61.306 105.889 -6.539 1.00138.88 C
ATOM 12 O2' C A 272 59.934 106.221 -6.453 1.00139.17 O
ATOM 13 C1' C A 272 62.079 106.917 -7.369 1.00139.97 C
ATOM 14 N1 C A 272 61.966 106.887 -8.845 1.00140.42 N
ATOM 15 C2 C A 272 62.722 107.810 -9.598 1.00140.55 C
ATOM 16 O2 C A 272 63.469 108.609 -9.011 1.00140.32 O
ATOM 17 N3 C A 272 62.616 107.806 -10.944 1.00140.78 N
ATOM 18 C4 C A 272 61.807 106.936 -11.548 1.00141.05 C
ATOM 19 N4 C A 272 61.735 106.974 -12.880 1.00141.12 N
ATOM 20 C5 C A 272 61.034 105.988 -10.815 1.00140.82 C
ATOM 21 C6 C A 272 61.143 105.998 -9.480 1.00140.60 C
ATOM 22 P A A 273 62.471 107.841 -3.361 1.00131.00 P
ATOM 23 OP1 A A 273 61.566 108.088 -2.205 1.00131.47 O
ATOM 24 OP2 A A 273 63.220 108.978 -3.966 1.00130.24 O
ATOM 25 O5' A A 273 63.531 106.719 -2.958 1.00126.69 O
TER
ATOM 1 O3' C B 272 61.589 107.182 -4.538 1.00134.16 O
ATOM 2 P A B 273 62.471 107.841 -3.361 1.00131.00 P
ATOM 3 OP1 A B 273 61.566 108.088 -2.205 1.00131.47 O
ATOM 4 OP2 A B 273 63.220 108.978 -3.966 1.00130.24 O
ATOM 5 O5' A B 273 63.531 106.719 -2.958 1.00126.69 O
ATOM 6 C5' A B 273 63.168 105.597 -2.130 1.00119.98 C
ATOM 7 C4' A B 273 64.377 105.111 -1.361 1.00115.55 C
ATOM 8 O4' A B 273 65.407 104.704 -2.305 1.00114.16 O
ATOM 9 C3' A B 273 65.065 106.162 -0.501 1.00112.45 C
ATOM 10 O3' A B 273 64.424 106.334 0.760 1.00108.89 O
ATOM 11 C2' A B 273 66.482 105.613 -0.393 1.00111.64 C
ATOM 12 O2' A B 273 66.603 104.552 0.535 1.00110.10 O
ATOM 13 C1' A B 273 66.691 105.068 -1.808 1.00111.48 C
ATOM 14 N9 A B 273 67.278 106.050 -2.727 1.00109.54 N
ATOM 15 C8 A B 273 66.630 106.791 -3.691 1.00108.81 C
ATOM 16 N7 A B 273 67.420 107.588 -4.366 1.00107.84 N
ATOM 17 C5 A B 273 68.673 107.362 -3.814 1.00107.16 C
ATOM 18 C6 A B 273 69.940 107.903 -4.094 1.00106.38 C
ATOM 19 N6 A B 273 70.164 108.813 -5.045 1.00105.52 N
ATOM 20 N1 A B 273 70.983 107.470 -3.355 1.00106.02 N
ATOM 21 C2 A B 273 70.759 106.555 -2.405 1.00106.17 C
ATOM 22 N3 A B 273 69.619 105.969 -2.051 1.00107.03 N
ATOM 23 C4 A B 273 68.601 106.420 -2.802 1.00107.74 C
ATOM 24 P U B 274 64.189 107.816 1.340 1.00105.87 P
ATOM 25 OP1 U B 274 63.490 107.686 2.644 1.00105.63 O
ATOM 26 OP2 U B 274 63.583 108.639 0.261 1.00104.81 O
ATOM 27 O5' U B 274 65.659 108.364 1.617 1.00103.77 O
TER
Atoms:
C2: (62.722,107.810,-9.598)
OP1: (64.299,101.948,-7.749)
OP2: (62.949,103.943,-8.652)
C4: (61.807,106.936,-11.548)
O5': (63.651,103.847,-6.264)
C3': (62.042,106.002,-5.204)
C1': (62.079,106.917,-7.369)
O4': (63.430,106.722,-7.010)
C5': (64.342,104.938,-5.631)
P: (64.005,103.409,-7.753)
O2: (63.469,108.609,-9.011)
C4': (63.490,106.184,-5.659)
C2': (61.306,105.889,-6.539)
O2': (59.934,106.221,-6.453)
N1: (61.966,106.887,-8.845)
N3: (62.616,107.806,-10.944)
N4: (61.735,106.974,-12.880)
C6: (61.143,105.998,-9.480)
C5: (61.034,105.988,-10.815)
O3': (61.589,107.182,-4.538)
OP1: (64.299,101.948,-7.749)
OP2: (62.949,103.943,-8.652)
C4: (61.807,106.936,-11.548)
O5': (63.651,103.847,-6.264)
C3': (62.042,106.002,-5.204)
C1': (62.079,106.917,-7.369)
O4': (63.430,106.722,-7.010)
C5': (64.342,104.938,-5.631)
P: (64.005,103.409,-7.753)
O2: (63.469,108.609,-9.011)
C4': (63.490,106.184,-5.659)
C2': (61.306,105.889,-6.539)
O2': (59.934,106.221,-6.453)
N1: (61.966,106.887,-8.845)
N3: (62.616,107.806,-10.944)
N4: (61.735,106.974,-12.880)
C6: (61.143,105.998,-9.480)
C5: (61.034,105.988,-10.815)
O3': (61.589,107.182,-4.538)
OP1: (61.566,108.088,-2.205)
OP2: (63.220,108.978,-3.966)
C3': (65.065,106.162,-0.501)
C1': (66.691,105.068,-1.808)
C5': (63.168,105.597,-2.130)
O4': (65.407,104.704,-2.305)
C8: (66.630,106.791,-3.691)
O2': (66.603,104.552,0.535)
C6: (69.940,107.903,-4.094)
C5: (68.673,107.362,-3.814)
C4: (68.601,106.420,-2.802)
P: (62.471,107.841,-3.361)
C4': (64.377,105.111,-1.361)
C2': (66.482,105.613,-0.393)
C2: (70.759,106.555,-2.405)
N1: (70.983,107.470,-3.355)
N3: (69.619,105.969,-2.051)
N6: (70.164,108.813,-5.045)
N7: (67.420,107.588,-4.366)
N9: (67.278,106.050,-2.727)
O5': (63.531,106.719,-2.958)
O3': (64.424,106.334,0.760)
OP2: (63.220,108.978,-3.966)
C3': (65.065,106.162,-0.501)
C1': (66.691,105.068,-1.808)
C5': (63.168,105.597,-2.130)
O4': (65.407,104.704,-2.305)
C8: (66.630,106.791,-3.691)
O2': (66.603,104.552,0.535)
C6: (69.940,107.903,-4.094)
C5: (68.673,107.362,-3.814)
C4: (68.601,106.420,-2.802)
P: (62.471,107.841,-3.361)
C4': (64.377,105.111,-1.361)
C2': (66.482,105.613,-0.393)
C2: (70.759,106.555,-2.405)
N1: (70.983,107.470,-3.355)
N3: (69.619,105.969,-2.051)
N6: (70.164,108.813,-5.045)
N7: (67.420,107.588,-4.366)
N9: (67.278,106.050,-2.727)
O5': (63.531,106.719,-2.958)
O3': (64.424,106.334,0.760)
Image (generated by PyMOL):