Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YHQ:0258:0228
Extra
PDB:
ATOM 1 O3' G A 257 79.133 103.834 -0.105 1.00 46.66 O
ATOM 2 P U A 258 77.647 103.790 0.505 1.00 47.97 P
ATOM 3 OP1 U A 258 76.996 102.542 0.030 1.00 48.46 O
ATOM 4 OP2 U A 258 76.987 105.097 0.256 1.00 45.27 O
ATOM 5 O5' U A 258 77.910 103.632 2.065 1.00 49.65 O
ATOM 6 C5' U A 258 78.603 102.479 2.576 1.00 51.41 C
ATOM 7 C4' U A 258 78.850 102.624 4.061 1.00 53.67 C
ATOM 8 O4' U A 258 79.950 103.553 4.304 1.00 51.02 O
ATOM 9 C3' U A 258 77.665 103.137 4.879 1.00 55.24 C
ATOM 10 O3' U A 258 77.629 102.476 6.142 1.00 61.65 O
ATOM 11 C2' U A 258 78.020 104.609 5.076 1.00 52.36 C
ATOM 12 O2' U A 258 77.401 105.189 6.210 1.00 52.30 O
ATOM 13 C1' U A 258 79.536 104.514 5.248 1.00 49.05 C
ATOM 14 N1 U A 258 80.339 105.741 5.090 1.00 43.86 N
ATOM 15 C2 U A 258 81.681 105.678 5.440 1.00 41.45 C
ATOM 16 O2 U A 258 82.233 104.648 5.778 1.00 39.03 O
ATOM 17 N3 U A 258 82.354 106.870 5.376 1.00 40.17 N
ATOM 18 C4 U A 258 81.847 108.093 4.993 1.00 42.00 C
ATOM 19 O4 U A 258 82.529 109.107 5.165 1.00 42.80 O
ATOM 20 C5 U A 258 80.476 108.068 4.587 1.00 40.62 C
ATOM 21 C6 U A 258 79.786 106.925 4.647 1.00 42.09 C
ATOM 22 P C A 259 76.231 101.914 6.709 1.00 66.11 P
ATOM 23 OP1 C A 259 75.137 102.874 6.403 1.00 63.64 O
ATOM 24 OP2 C A 259 76.480 101.509 8.114 1.00 67.28 O
ATOM 25 O5' C A 259 75.970 100.592 5.863 1.00 70.21 O
TER
ATOM 1 O3' C B 227 77.106 112.421 4.513 1.00 39.69 O
ATOM 2 P C B 228 78.546 112.059 3.903 1.00 39.89 P
ATOM 3 OP1 C B 228 78.679 112.894 2.682 1.00 41.84 O
ATOM 4 OP2 C B 228 78.702 110.587 3.806 1.00 39.85 O
ATOM 5 O5' C B 228 79.562 112.580 5.013 1.00 39.40 O
ATOM 6 C5' C B 228 80.933 112.159 5.023 1.00 37.28 C
ATOM 7 C4' C B 228 81.545 112.422 6.375 1.00 36.27 C
ATOM 8 O4' C B 228 80.855 111.640 7.382 1.00 37.41 O
ATOM 9 C3' C B 228 82.999 112.008 6.503 1.00 37.66 C
ATOM 10 O3' C B 228 83.834 113.066 6.037 1.00 37.18 O
ATOM 11 C2' C B 228 83.156 111.788 8.003 1.00 37.68 C
ATOM 12 O2' C B 228 83.377 112.992 8.714 1.00 41.71 O
ATOM 13 C1' C B 228 81.777 111.232 8.384 1.00 37.43 C
ATOM 14 N1 C B 228 81.684 109.763 8.559 1.00 35.42 N
ATOM 15 C2 C B 228 82.644 109.094 9.355 1.00 36.14 C
ATOM 16 O2 C B 228 83.521 109.753 9.933 1.00 38.78 O
ATOM 17 N3 C B 228 82.578 107.746 9.476 1.00 34.88 N
ATOM 18 C4 C B 228 81.603 107.067 8.862 1.00 34.64 C
ATOM 19 N4 C B 228 81.590 105.744 8.986 1.00 31.33 N
ATOM 20 C5 C B 228 80.600 107.720 8.083 1.00 34.88 C
ATOM 21 C6 C B 228 80.681 109.052 7.956 1.00 35.80 C
ATOM 22 P A B 229 85.243 112.738 5.342 1.00 37.28 P
ATOM 23 OP1 A B 229 86.007 114.018 5.329 1.00 38.37 O
ATOM 24 OP2 A B 229 84.975 112.022 4.072 1.00 37.21 O
ATOM 25 O5' A B 229 85.983 111.741 6.338 1.00 37.75 O
TER
ATOM 2 P U A 258 77.647 103.790 0.505 1.00 47.97 P
ATOM 3 OP1 U A 258 76.996 102.542 0.030 1.00 48.46 O
ATOM 4 OP2 U A 258 76.987 105.097 0.256 1.00 45.27 O
ATOM 5 O5' U A 258 77.910 103.632 2.065 1.00 49.65 O
ATOM 6 C5' U A 258 78.603 102.479 2.576 1.00 51.41 C
ATOM 7 C4' U A 258 78.850 102.624 4.061 1.00 53.67 C
ATOM 8 O4' U A 258 79.950 103.553 4.304 1.00 51.02 O
ATOM 9 C3' U A 258 77.665 103.137 4.879 1.00 55.24 C
ATOM 10 O3' U A 258 77.629 102.476 6.142 1.00 61.65 O
ATOM 11 C2' U A 258 78.020 104.609 5.076 1.00 52.36 C
ATOM 12 O2' U A 258 77.401 105.189 6.210 1.00 52.30 O
ATOM 13 C1' U A 258 79.536 104.514 5.248 1.00 49.05 C
ATOM 14 N1 U A 258 80.339 105.741 5.090 1.00 43.86 N
ATOM 15 C2 U A 258 81.681 105.678 5.440 1.00 41.45 C
ATOM 16 O2 U A 258 82.233 104.648 5.778 1.00 39.03 O
ATOM 17 N3 U A 258 82.354 106.870 5.376 1.00 40.17 N
ATOM 18 C4 U A 258 81.847 108.093 4.993 1.00 42.00 C
ATOM 19 O4 U A 258 82.529 109.107 5.165 1.00 42.80 O
ATOM 20 C5 U A 258 80.476 108.068 4.587 1.00 40.62 C
ATOM 21 C6 U A 258 79.786 106.925 4.647 1.00 42.09 C
ATOM 22 P C A 259 76.231 101.914 6.709 1.00 66.11 P
ATOM 23 OP1 C A 259 75.137 102.874 6.403 1.00 63.64 O
ATOM 24 OP2 C A 259 76.480 101.509 8.114 1.00 67.28 O
ATOM 25 O5' C A 259 75.970 100.592 5.863 1.00 70.21 O
TER
ATOM 1 O3' C B 227 77.106 112.421 4.513 1.00 39.69 O
ATOM 2 P C B 228 78.546 112.059 3.903 1.00 39.89 P
ATOM 3 OP1 C B 228 78.679 112.894 2.682 1.00 41.84 O
ATOM 4 OP2 C B 228 78.702 110.587 3.806 1.00 39.85 O
ATOM 5 O5' C B 228 79.562 112.580 5.013 1.00 39.40 O
ATOM 6 C5' C B 228 80.933 112.159 5.023 1.00 37.28 C
ATOM 7 C4' C B 228 81.545 112.422 6.375 1.00 36.27 C
ATOM 8 O4' C B 228 80.855 111.640 7.382 1.00 37.41 O
ATOM 9 C3' C B 228 82.999 112.008 6.503 1.00 37.66 C
ATOM 10 O3' C B 228 83.834 113.066 6.037 1.00 37.18 O
ATOM 11 C2' C B 228 83.156 111.788 8.003 1.00 37.68 C
ATOM 12 O2' C B 228 83.377 112.992 8.714 1.00 41.71 O
ATOM 13 C1' C B 228 81.777 111.232 8.384 1.00 37.43 C
ATOM 14 N1 C B 228 81.684 109.763 8.559 1.00 35.42 N
ATOM 15 C2 C B 228 82.644 109.094 9.355 1.00 36.14 C
ATOM 16 O2 C B 228 83.521 109.753 9.933 1.00 38.78 O
ATOM 17 N3 C B 228 82.578 107.746 9.476 1.00 34.88 N
ATOM 18 C4 C B 228 81.603 107.067 8.862 1.00 34.64 C
ATOM 19 N4 C B 228 81.590 105.744 8.986 1.00 31.33 N
ATOM 20 C5 C B 228 80.600 107.720 8.083 1.00 34.88 C
ATOM 21 C6 C B 228 80.681 109.052 7.956 1.00 35.80 C
ATOM 22 P A B 229 85.243 112.738 5.342 1.00 37.28 P
ATOM 23 OP1 A B 229 86.007 114.018 5.329 1.00 38.37 O
ATOM 24 OP2 A B 229 84.975 112.022 4.072 1.00 37.21 O
ATOM 25 O5' A B 229 85.983 111.741 6.338 1.00 37.75 O
TER
Atoms:
C4: (81.847,108.093,4.993)
N3: (82.354,106.870,5.376)
OP1: (76.996,102.542,0.030)
OP2: (76.987,105.097,0.256)
C2: (81.681,105.678,5.440)
C1': (79.536,104.514,5.248)
C3': (77.665,103.137,4.879)
O5': (77.910,103.632,2.065)
O4': (79.950,103.553,4.304)
C5': (78.603,102.479,2.576)
P: (77.647,103.790,0.505)
C4': (78.850,102.624,4.061)
C2': (78.020,104.609,5.076)
O2': (77.401,105.189,6.210)
N1: (80.339,105.741,5.090)
O4: (82.529,109.107,5.165)
O2: (82.233,104.648,5.778)
C6: (79.786,106.925,4.647)
C5: (80.476,108.068,4.587)
O3': (77.629,102.476,6.142)
N3: (82.354,106.870,5.376)
OP1: (76.996,102.542,0.030)
OP2: (76.987,105.097,0.256)
C2: (81.681,105.678,5.440)
C1': (79.536,104.514,5.248)
C3': (77.665,103.137,4.879)
O5': (77.910,103.632,2.065)
O4': (79.950,103.553,4.304)
C5': (78.603,102.479,2.576)
P: (77.647,103.790,0.505)
C4': (78.850,102.624,4.061)
C2': (78.020,104.609,5.076)
O2': (77.401,105.189,6.210)
N1: (80.339,105.741,5.090)
O4: (82.529,109.107,5.165)
O2: (82.233,104.648,5.778)
C6: (79.786,106.925,4.647)
C5: (80.476,108.068,4.587)
O3': (77.629,102.476,6.142)
C2: (82.644,109.094,9.355)
OP1: (78.679,112.894,2.682)
OP2: (78.702,110.587,3.806)
C4: (81.603,107.067,8.862)
O5': (79.562,112.580,5.013)
C3': (82.999,112.008,6.503)
C1': (81.777,111.232,8.384)
O4': (80.855,111.640,7.382)
C5': (80.933,112.159,5.023)
P: (78.546,112.059,3.903)
O2: (83.521,109.753,9.933)
C4': (81.545,112.422,6.375)
C2': (83.156,111.788,8.003)
O2': (83.377,112.992,8.714)
N1: (81.684,109.763,8.559)
N3: (82.578,107.746,9.476)
N4: (81.590,105.744,8.986)
C6: (80.681,109.052,7.956)
C5: (80.600,107.720,8.083)
O3': (83.834,113.066,6.037)
OP1: (78.679,112.894,2.682)
OP2: (78.702,110.587,3.806)
C4: (81.603,107.067,8.862)
O5': (79.562,112.580,5.013)
C3': (82.999,112.008,6.503)
C1': (81.777,111.232,8.384)
O4': (80.855,111.640,7.382)
C5': (80.933,112.159,5.023)
P: (78.546,112.059,3.903)
O2: (83.521,109.753,9.933)
C4': (81.545,112.422,6.375)
C2': (83.156,111.788,8.003)
O2': (83.377,112.992,8.714)
N1: (81.684,109.763,8.559)
N3: (82.578,107.746,9.476)
N4: (81.590,105.744,8.986)
C6: (80.681,109.052,7.956)
C5: (80.600,107.720,8.083)
O3': (83.834,113.066,6.037)
Image (generated by PyMOL):