Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01087:01086
Extra
PDB:
ATOM 1 O3' C A1086 49.684 101.587 115.050 1.00 42.45 O
ATOM 2 P U A1087 48.498 101.271 116.094 1.00 43.38 P
ATOM 3 OP1 U A1087 49.084 101.244 117.457 1.00 41.73 O
ATOM 4 OP2 U A1087 47.751 100.085 115.593 1.00 42.63 O
ATOM 5 O5' U A1087 47.550 102.545 115.997 1.00 42.63 O
ATOM 6 C5' U A1087 48.043 103.842 116.345 1.00 43.15 C
ATOM 7 C4' U A1087 46.967 104.879 116.166 1.00 44.78 C
ATOM 8 O4' U A1087 46.677 105.041 114.749 1.00 46.23 O
ATOM 9 C3' U A1087 45.631 104.582 116.842 1.00 45.19 C
ATOM 10 O3' U A1087 45.079 105.802 117.301 1.00 47.57 O
ATOM 11 C2' U A1087 44.785 104.054 115.689 1.00 45.01 C
ATOM 12 O2' U A1087 43.401 104.241 115.888 1.00 45.47 O
ATOM 13 C1' U A1087 45.284 104.932 114.546 1.00 44.31 C
ATOM 14 N1 U A1087 45.033 104.440 113.184 1.00 43.08 N
ATOM 15 C2 U A1087 44.446 105.325 112.290 1.00 42.52 C
ATOM 16 O2 U A1087 44.142 106.469 112.591 1.00 44.43 O
ATOM 17 N3 U A1087 44.226 104.824 111.032 1.00 40.76 N
ATOM 18 C4 U A1087 44.520 103.555 110.581 1.00 42.15 C
ATOM 19 O4 U A1087 44.252 103.253 109.418 1.00 39.57 O
ATOM 20 C5 U A1087 45.127 102.695 111.559 1.00 43.12 C
ATOM 21 C6 U A1087 45.358 103.158 112.797 1.00 43.73 C
ATOM 22 P C A1088 45.058 106.120 118.870 1.00 51.73 P
ATOM 23 OP1 C A1088 44.465 107.478 119.041 1.00 51.39 O
ATOM 24 OP2 C A1088 46.415 105.838 119.412 1.00 51.27 O
ATOM 25 O5' C A1088 44.054 105.029 119.463 1.00 52.42 O
TER
ATOM 1 O3' C B1085 45.630 99.357 111.733 1.00 45.70 O
ATOM 2 P C B1086 47.087 99.353 111.052 1.00 46.52 P
ATOM 3 OP1 C B1086 47.019 100.139 109.790 1.00 46.61 O
ATOM 4 OP2 C B1086 47.569 97.948 111.012 1.00 46.12 O
ATOM 5 O5' C B1086 47.966 100.184 112.086 1.00 44.52 O
ATOM 6 C5' C B1086 49.343 99.875 112.317 1.00 41.80 C
ATOM 7 C4' C B1086 50.083 101.128 112.694 1.00 41.91 C
ATOM 8 O4' C B1086 50.249 101.961 111.521 1.00 40.34 O
ATOM 9 C3' C B1086 49.379 102.012 113.714 1.00 40.95 C
ATOM 10 O3' C B1086 49.684 101.587 115.050 1.00 42.45 O
ATOM 11 C2' C B1086 49.969 103.387 113.420 1.00 39.79 C
ATOM 12 O2' C B1086 51.211 103.586 114.056 1.00 41.29 O
ATOM 13 C1' C B1086 50.181 103.326 111.899 1.00 39.90 C
ATOM 14 N1 C B1086 49.143 103.990 111.081 1.00 39.03 N
ATOM 15 C2 C B1086 48.964 105.379 111.199 1.00 36.87 C
ATOM 16 O2 C B1086 49.683 106.017 111.979 1.00 36.14 O
ATOM 17 N3 C B1086 48.015 105.986 110.452 1.00 35.65 N
ATOM 18 C4 C B1086 47.278 105.271 109.602 1.00 34.78 C
ATOM 19 N4 C B1086 46.373 105.917 108.868 1.00 36.34 N
ATOM 20 C5 C B1086 47.439 103.864 109.461 1.00 35.51 C
ATOM 21 C6 C B1086 48.367 103.269 110.214 1.00 36.50 C
ATOM 22 P U B1087 48.498 101.271 116.094 1.00 43.38 P
ATOM 23 OP1 U B1087 49.084 101.244 117.457 1.00 41.73 O
ATOM 24 OP2 U B1087 47.751 100.085 115.593 1.00 42.63 O
ATOM 25 O5' U B1087 47.550 102.545 115.997 1.00 42.63 O
TER
ATOM 2 P U A1087 48.498 101.271 116.094 1.00 43.38 P
ATOM 3 OP1 U A1087 49.084 101.244 117.457 1.00 41.73 O
ATOM 4 OP2 U A1087 47.751 100.085 115.593 1.00 42.63 O
ATOM 5 O5' U A1087 47.550 102.545 115.997 1.00 42.63 O
ATOM 6 C5' U A1087 48.043 103.842 116.345 1.00 43.15 C
ATOM 7 C4' U A1087 46.967 104.879 116.166 1.00 44.78 C
ATOM 8 O4' U A1087 46.677 105.041 114.749 1.00 46.23 O
ATOM 9 C3' U A1087 45.631 104.582 116.842 1.00 45.19 C
ATOM 10 O3' U A1087 45.079 105.802 117.301 1.00 47.57 O
ATOM 11 C2' U A1087 44.785 104.054 115.689 1.00 45.01 C
ATOM 12 O2' U A1087 43.401 104.241 115.888 1.00 45.47 O
ATOM 13 C1' U A1087 45.284 104.932 114.546 1.00 44.31 C
ATOM 14 N1 U A1087 45.033 104.440 113.184 1.00 43.08 N
ATOM 15 C2 U A1087 44.446 105.325 112.290 1.00 42.52 C
ATOM 16 O2 U A1087 44.142 106.469 112.591 1.00 44.43 O
ATOM 17 N3 U A1087 44.226 104.824 111.032 1.00 40.76 N
ATOM 18 C4 U A1087 44.520 103.555 110.581 1.00 42.15 C
ATOM 19 O4 U A1087 44.252 103.253 109.418 1.00 39.57 O
ATOM 20 C5 U A1087 45.127 102.695 111.559 1.00 43.12 C
ATOM 21 C6 U A1087 45.358 103.158 112.797 1.00 43.73 C
ATOM 22 P C A1088 45.058 106.120 118.870 1.00 51.73 P
ATOM 23 OP1 C A1088 44.465 107.478 119.041 1.00 51.39 O
ATOM 24 OP2 C A1088 46.415 105.838 119.412 1.00 51.27 O
ATOM 25 O5' C A1088 44.054 105.029 119.463 1.00 52.42 O
TER
ATOM 1 O3' C B1085 45.630 99.357 111.733 1.00 45.70 O
ATOM 2 P C B1086 47.087 99.353 111.052 1.00 46.52 P
ATOM 3 OP1 C B1086 47.019 100.139 109.790 1.00 46.61 O
ATOM 4 OP2 C B1086 47.569 97.948 111.012 1.00 46.12 O
ATOM 5 O5' C B1086 47.966 100.184 112.086 1.00 44.52 O
ATOM 6 C5' C B1086 49.343 99.875 112.317 1.00 41.80 C
ATOM 7 C4' C B1086 50.083 101.128 112.694 1.00 41.91 C
ATOM 8 O4' C B1086 50.249 101.961 111.521 1.00 40.34 O
ATOM 9 C3' C B1086 49.379 102.012 113.714 1.00 40.95 C
ATOM 10 O3' C B1086 49.684 101.587 115.050 1.00 42.45 O
ATOM 11 C2' C B1086 49.969 103.387 113.420 1.00 39.79 C
ATOM 12 O2' C B1086 51.211 103.586 114.056 1.00 41.29 O
ATOM 13 C1' C B1086 50.181 103.326 111.899 1.00 39.90 C
ATOM 14 N1 C B1086 49.143 103.990 111.081 1.00 39.03 N
ATOM 15 C2 C B1086 48.964 105.379 111.199 1.00 36.87 C
ATOM 16 O2 C B1086 49.683 106.017 111.979 1.00 36.14 O
ATOM 17 N3 C B1086 48.015 105.986 110.452 1.00 35.65 N
ATOM 18 C4 C B1086 47.278 105.271 109.602 1.00 34.78 C
ATOM 19 N4 C B1086 46.373 105.917 108.868 1.00 36.34 N
ATOM 20 C5 C B1086 47.439 103.864 109.461 1.00 35.51 C
ATOM 21 C6 C B1086 48.367 103.269 110.214 1.00 36.50 C
ATOM 22 P U B1087 48.498 101.271 116.094 1.00 43.38 P
ATOM 23 OP1 U B1087 49.084 101.244 117.457 1.00 41.73 O
ATOM 24 OP2 U B1087 47.751 100.085 115.593 1.00 42.63 O
ATOM 25 O5' U B1087 47.550 102.545 115.997 1.00 42.63 O
TER
Atoms:
C4: (44.520,103.555,110.581)
N3: (44.226,104.824,111.032)
OP1: (49.084,101.244,117.457)
OP2: (47.751,100.085,115.593)
C2: (44.446,105.325,112.290)
C1': (45.284,104.932,114.546)
C3': (45.631,104.582,116.842)
O5': (47.550,102.545,115.997)
O4': (46.677,105.041,114.749)
C5': (48.043,103.842,116.345)
P: (48.498,101.271,116.094)
C4': (46.967,104.879,116.166)
C2': (44.785,104.054,115.689)
O2': (43.401,104.241,115.888)
N1: (45.033,104.440,113.184)
O4: (44.252,103.253,109.418)
O2: (44.142,106.469,112.591)
C6: (45.358,103.158,112.797)
C5: (45.127,102.695,111.559)
O3': (45.079,105.802,117.301)
N3: (44.226,104.824,111.032)
OP1: (49.084,101.244,117.457)
OP2: (47.751,100.085,115.593)
C2: (44.446,105.325,112.290)
C1': (45.284,104.932,114.546)
C3': (45.631,104.582,116.842)
O5': (47.550,102.545,115.997)
O4': (46.677,105.041,114.749)
C5': (48.043,103.842,116.345)
P: (48.498,101.271,116.094)
C4': (46.967,104.879,116.166)
C2': (44.785,104.054,115.689)
O2': (43.401,104.241,115.888)
N1: (45.033,104.440,113.184)
O4: (44.252,103.253,109.418)
O2: (44.142,106.469,112.591)
C6: (45.358,103.158,112.797)
C5: (45.127,102.695,111.559)
O3': (45.079,105.802,117.301)
C2: (48.964,105.379,111.199)
OP1: (47.019,100.139,109.790)
OP2: (47.569,97.948,111.012)
C4: (47.278,105.271,109.602)
O5': (47.966,100.184,112.086)
C3': (49.379,102.012,113.714)
C1': (50.181,103.326,111.899)
O4': (50.249,101.961,111.521)
C5': (49.343,99.875,112.317)
P: (47.087,99.353,111.052)
O2: (49.683,106.017,111.979)
C4': (50.083,101.128,112.694)
C2': (49.969,103.387,113.420)
O2': (51.211,103.586,114.056)
N1: (49.143,103.990,111.081)
N3: (48.015,105.986,110.452)
N4: (46.373,105.917,108.868)
C6: (48.367,103.269,110.214)
C5: (47.439,103.864,109.461)
O3': (49.684,101.587,115.050)
OP1: (47.019,100.139,109.790)
OP2: (47.569,97.948,111.012)
C4: (47.278,105.271,109.602)
O5': (47.966,100.184,112.086)
C3': (49.379,102.012,113.714)
C1': (50.181,103.326,111.899)
O4': (50.249,101.961,111.521)
C5': (49.343,99.875,112.317)
P: (47.087,99.353,111.052)
O2: (49.683,106.017,111.979)
C4': (50.083,101.128,112.694)
C2': (49.969,103.387,113.420)
O2': (51.211,103.586,114.056)
N1: (49.143,103.990,111.081)
N3: (48.015,105.986,110.452)
N4: (46.373,105.917,108.868)
C6: (48.367,103.269,110.214)
C5: (47.439,103.864,109.461)
O3': (49.684,101.587,115.050)
Image (generated by PyMOL):