Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0258:0228
Extra
PDB:
ATOM 1 O3' G A 257 79.316 104.447 0.001 1.00 54.76 O
ATOM 2 P U A 258 77.840 104.386 0.628 1.00 55.33 P
ATOM 3 OP1 U A 258 77.175 103.151 0.140 1.00 55.46 O
ATOM 4 OP2 U A 258 77.180 105.704 0.418 1.00 54.09 O
ATOM 5 O5' U A 258 78.129 104.199 2.180 1.00 56.93 O
ATOM 6 C5' U A 258 78.834 103.040 2.654 1.00 57.17 C
ATOM 7 C4' U A 258 79.104 103.161 4.133 1.00 58.44 C
ATOM 8 O4' U A 258 80.162 104.136 4.370 1.00 56.29 O
ATOM 9 C3' U A 258 77.913 103.612 4.976 1.00 58.65 C
ATOM 10 O3' U A 258 77.960 102.958 6.240 1.00 61.79 O
ATOM 11 C2' U A 258 78.197 105.099 5.165 1.00 57.15 C
ATOM 12 O2' U A 258 77.564 105.643 6.309 1.00 59.08 O
ATOM 13 C1' U A 258 79.716 105.067 5.325 1.00 54.26 C
ATOM 14 N1 U A 258 80.476 106.322 5.187 1.00 49.81 N
ATOM 15 C2 U A 258 81.807 106.300 5.572 1.00 48.50 C
ATOM 16 O2 U A 258 82.382 105.282 5.926 1.00 48.27 O
ATOM 17 N3 U A 258 82.445 107.513 5.526 1.00 46.91 N
ATOM 18 C4 U A 258 81.911 108.719 5.132 1.00 46.51 C
ATOM 19 O4 U A 258 82.565 109.749 5.308 1.00 45.63 O
ATOM 20 C5 U A 258 80.548 108.654 4.694 1.00 46.49 C
ATOM 21 C6 U A 258 79.895 107.488 4.733 1.00 48.10 C
ATOM 22 P C A 259 76.607 102.408 6.905 1.00 63.83 P
ATOM 23 OP1 C A 259 75.518 103.399 6.717 1.00 62.79 O
ATOM 24 OP2 C A 259 76.978 101.969 8.274 1.00 64.77 O
ATOM 25 O5' C A 259 76.238 101.125 6.042 1.00 66.42 O
TER
ATOM 1 O3' C B 227 77.220 113.077 4.631 1.00 48.18 O
ATOM 2 P C B 228 78.671 112.726 4.027 1.00 49.75 P
ATOM 3 OP1 C B 228 78.796 113.531 2.785 1.00 51.24 O
ATOM 4 OP2 C B 228 78.868 111.257 3.967 1.00 48.00 O
ATOM 5 O5' C B 228 79.683 113.302 5.116 1.00 49.25 O
ATOM 6 C5' C B 228 81.062 112.899 5.131 1.00 47.70 C
ATOM 7 C4' C B 228 81.654 113.121 6.499 1.00 47.84 C
ATOM 8 O4' C B 228 80.948 112.318 7.479 1.00 46.91 O
ATOM 9 C3' C B 228 83.103 112.695 6.639 1.00 48.60 C
ATOM 10 O3' C B 228 83.957 113.745 6.193 1.00 49.69 O
ATOM 11 C2' C B 228 83.237 112.463 8.142 1.00 48.34 C
ATOM 12 O2' C B 228 83.450 113.655 8.876 1.00 50.45 O
ATOM 13 C1' C B 228 81.850 111.908 8.498 1.00 47.52 C
ATOM 14 N1 C B 228 81.758 110.437 8.675 1.00 45.70 N
ATOM 15 C2 C B 228 82.735 109.761 9.452 1.00 46.13 C
ATOM 16 O2 C B 228 83.631 110.414 10.016 1.00 45.81 O
ATOM 17 N3 C B 228 82.667 108.414 9.569 1.00 45.95 N
ATOM 18 C4 C B 228 81.681 107.740 8.970 1.00 45.67 C
ATOM 19 N4 C B 228 81.673 106.412 9.091 1.00 44.05 N
ATOM 20 C5 C B 228 80.663 108.398 8.214 1.00 45.52 C
ATOM 21 C6 C B 228 80.741 109.730 8.092 1.00 45.18 C
ATOM 22 P A B 229 85.306 113.404 5.390 1.00 50.49 P
ATOM 23 OP1 A B 229 86.059 114.679 5.256 1.00 50.02 O
ATOM 24 OP2 A B 229 84.931 112.637 4.176 1.00 49.18 O
ATOM 25 O5' A B 229 86.136 112.458 6.362 1.00 48.18 O
TER
ATOM 2 P U A 258 77.840 104.386 0.628 1.00 55.33 P
ATOM 3 OP1 U A 258 77.175 103.151 0.140 1.00 55.46 O
ATOM 4 OP2 U A 258 77.180 105.704 0.418 1.00 54.09 O
ATOM 5 O5' U A 258 78.129 104.199 2.180 1.00 56.93 O
ATOM 6 C5' U A 258 78.834 103.040 2.654 1.00 57.17 C
ATOM 7 C4' U A 258 79.104 103.161 4.133 1.00 58.44 C
ATOM 8 O4' U A 258 80.162 104.136 4.370 1.00 56.29 O
ATOM 9 C3' U A 258 77.913 103.612 4.976 1.00 58.65 C
ATOM 10 O3' U A 258 77.960 102.958 6.240 1.00 61.79 O
ATOM 11 C2' U A 258 78.197 105.099 5.165 1.00 57.15 C
ATOM 12 O2' U A 258 77.564 105.643 6.309 1.00 59.08 O
ATOM 13 C1' U A 258 79.716 105.067 5.325 1.00 54.26 C
ATOM 14 N1 U A 258 80.476 106.322 5.187 1.00 49.81 N
ATOM 15 C2 U A 258 81.807 106.300 5.572 1.00 48.50 C
ATOM 16 O2 U A 258 82.382 105.282 5.926 1.00 48.27 O
ATOM 17 N3 U A 258 82.445 107.513 5.526 1.00 46.91 N
ATOM 18 C4 U A 258 81.911 108.719 5.132 1.00 46.51 C
ATOM 19 O4 U A 258 82.565 109.749 5.308 1.00 45.63 O
ATOM 20 C5 U A 258 80.548 108.654 4.694 1.00 46.49 C
ATOM 21 C6 U A 258 79.895 107.488 4.733 1.00 48.10 C
ATOM 22 P C A 259 76.607 102.408 6.905 1.00 63.83 P
ATOM 23 OP1 C A 259 75.518 103.399 6.717 1.00 62.79 O
ATOM 24 OP2 C A 259 76.978 101.969 8.274 1.00 64.77 O
ATOM 25 O5' C A 259 76.238 101.125 6.042 1.00 66.42 O
TER
ATOM 1 O3' C B 227 77.220 113.077 4.631 1.00 48.18 O
ATOM 2 P C B 228 78.671 112.726 4.027 1.00 49.75 P
ATOM 3 OP1 C B 228 78.796 113.531 2.785 1.00 51.24 O
ATOM 4 OP2 C B 228 78.868 111.257 3.967 1.00 48.00 O
ATOM 5 O5' C B 228 79.683 113.302 5.116 1.00 49.25 O
ATOM 6 C5' C B 228 81.062 112.899 5.131 1.00 47.70 C
ATOM 7 C4' C B 228 81.654 113.121 6.499 1.00 47.84 C
ATOM 8 O4' C B 228 80.948 112.318 7.479 1.00 46.91 O
ATOM 9 C3' C B 228 83.103 112.695 6.639 1.00 48.60 C
ATOM 10 O3' C B 228 83.957 113.745 6.193 1.00 49.69 O
ATOM 11 C2' C B 228 83.237 112.463 8.142 1.00 48.34 C
ATOM 12 O2' C B 228 83.450 113.655 8.876 1.00 50.45 O
ATOM 13 C1' C B 228 81.850 111.908 8.498 1.00 47.52 C
ATOM 14 N1 C B 228 81.758 110.437 8.675 1.00 45.70 N
ATOM 15 C2 C B 228 82.735 109.761 9.452 1.00 46.13 C
ATOM 16 O2 C B 228 83.631 110.414 10.016 1.00 45.81 O
ATOM 17 N3 C B 228 82.667 108.414 9.569 1.00 45.95 N
ATOM 18 C4 C B 228 81.681 107.740 8.970 1.00 45.67 C
ATOM 19 N4 C B 228 81.673 106.412 9.091 1.00 44.05 N
ATOM 20 C5 C B 228 80.663 108.398 8.214 1.00 45.52 C
ATOM 21 C6 C B 228 80.741 109.730 8.092 1.00 45.18 C
ATOM 22 P A B 229 85.306 113.404 5.390 1.00 50.49 P
ATOM 23 OP1 A B 229 86.059 114.679 5.256 1.00 50.02 O
ATOM 24 OP2 A B 229 84.931 112.637 4.176 1.00 49.18 O
ATOM 25 O5' A B 229 86.136 112.458 6.362 1.00 48.18 O
TER
Atoms:
C4: (81.911,108.719,5.132)
N3: (82.445,107.513,5.526)
OP1: (77.175,103.151,0.140)
OP2: (77.180,105.704,0.418)
C2: (81.807,106.300,5.572)
C1': (79.716,105.067,5.325)
C3': (77.913,103.612,4.976)
O5': (78.129,104.199,2.180)
O4': (80.162,104.136,4.370)
C5': (78.834,103.040,2.654)
P: (77.840,104.386,0.628)
C4': (79.104,103.161,4.133)
C2': (78.197,105.099,5.165)
O2': (77.564,105.643,6.309)
N1: (80.476,106.322,5.187)
O4: (82.565,109.749,5.308)
O2: (82.382,105.282,5.926)
C6: (79.895,107.488,4.733)
C5: (80.548,108.654,4.694)
O3': (77.960,102.958,6.240)
N3: (82.445,107.513,5.526)
OP1: (77.175,103.151,0.140)
OP2: (77.180,105.704,0.418)
C2: (81.807,106.300,5.572)
C1': (79.716,105.067,5.325)
C3': (77.913,103.612,4.976)
O5': (78.129,104.199,2.180)
O4': (80.162,104.136,4.370)
C5': (78.834,103.040,2.654)
P: (77.840,104.386,0.628)
C4': (79.104,103.161,4.133)
C2': (78.197,105.099,5.165)
O2': (77.564,105.643,6.309)
N1: (80.476,106.322,5.187)
O4: (82.565,109.749,5.308)
O2: (82.382,105.282,5.926)
C6: (79.895,107.488,4.733)
C5: (80.548,108.654,4.694)
O3': (77.960,102.958,6.240)
C2: (82.735,109.761,9.452)
OP1: (78.796,113.531,2.785)
OP2: (78.868,111.257,3.967)
C4: (81.681,107.740,8.970)
O5': (79.683,113.302,5.116)
C3': (83.103,112.695,6.639)
C1': (81.850,111.908,8.498)
O4': (80.948,112.318,7.479)
C5': (81.062,112.899,5.131)
P: (78.671,112.726,4.027)
O2: (83.631,110.414,10.016)
C4': (81.654,113.121,6.499)
C2': (83.237,112.463,8.142)
O2': (83.450,113.655,8.876)
N1: (81.758,110.437,8.675)
N3: (82.667,108.414,9.569)
N4: (81.673,106.412,9.091)
C6: (80.741,109.730,8.092)
C5: (80.663,108.398,8.214)
O3': (83.957,113.745,6.193)
OP1: (78.796,113.531,2.785)
OP2: (78.868,111.257,3.967)
C4: (81.681,107.740,8.970)
O5': (79.683,113.302,5.116)
C3': (83.103,112.695,6.639)
C1': (81.850,111.908,8.498)
O4': (80.948,112.318,7.479)
C5': (81.062,112.899,5.131)
P: (78.671,112.726,4.027)
O2: (83.631,110.414,10.016)
C4': (81.654,113.121,6.499)
C2': (83.237,112.463,8.142)
O2': (83.450,113.655,8.876)
N1: (81.758,110.437,8.675)
N3: (82.667,108.414,9.569)
N4: (81.673,106.412,9.091)
C6: (80.741,109.730,8.092)
C5: (80.663,108.398,8.214)
O3': (83.957,113.745,6.193)
Image (generated by PyMOL):