Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01087:01086
Extra
PDB:
ATOM 1 O3' C A1086 49.827 101.651 115.404 1.00 46.85 O
ATOM 2 P U A1087 48.632 101.382 116.440 1.00 47.27 P
ATOM 3 OP1 U A1087 49.207 101.395 117.803 1.00 47.07 O
ATOM 4 OP2 U A1087 47.907 100.178 115.959 1.00 46.84 O
ATOM 5 O5' U A1087 47.692 102.654 116.304 1.00 46.78 O
ATOM 6 C5' U A1087 48.170 103.950 116.656 1.00 47.49 C
ATOM 7 C4' U A1087 47.084 104.978 116.477 1.00 49.63 C
ATOM 8 O4' U A1087 46.829 105.183 115.057 1.00 50.76 O
ATOM 9 C3' U A1087 45.737 104.658 117.117 1.00 50.03 C
ATOM 10 O3' U A1087 45.178 105.853 117.624 1.00 50.17 O
ATOM 11 C2' U A1087 44.910 104.169 115.933 1.00 51.44 C
ATOM 12 O2' U A1087 43.529 104.381 116.111 1.00 52.45 O
ATOM 13 C1' U A1087 45.443 105.057 114.811 1.00 51.98 C
ATOM 14 N1 U A1087 45.251 104.543 113.445 1.00 52.63 N
ATOM 15 C2 U A1087 44.702 105.405 112.513 1.00 53.85 C
ATOM 16 O2 U A1087 44.364 106.547 112.781 1.00 56.94 O
ATOM 17 N3 U A1087 44.563 104.882 111.252 1.00 51.91 N
ATOM 18 C4 U A1087 44.902 103.616 110.839 1.00 52.49 C
ATOM 19 O4 U A1087 44.774 103.317 109.655 1.00 52.85 O
ATOM 20 C5 U A1087 45.451 102.781 111.859 1.00 53.49 C
ATOM 21 C6 U A1087 45.605 103.261 113.095 1.00 53.43 C
ATOM 22 P C A1088 45.350 106.199 119.178 1.00 54.03 P
ATOM 23 OP1 C A1088 44.785 107.557 119.434 1.00 51.86 O
ATOM 24 OP2 C A1088 46.775 105.921 119.521 1.00 52.56 O
ATOM 25 O5' C A1088 44.424 105.122 119.906 1.00 53.09 O
TER
ATOM 1 O3' C B1085 45.859 99.581 112.154 1.00 48.41 O
ATOM 2 P C B1086 47.238 99.472 111.330 1.00 48.51 P
ATOM 3 OP1 C B1086 47.005 100.072 109.991 1.00 49.45 O
ATOM 4 OP2 C B1086 47.771 98.086 111.426 1.00 47.63 O
ATOM 5 O5' C B1086 48.195 100.463 112.122 1.00 48.84 O
ATOM 6 C5' C B1086 49.460 100.037 112.627 1.00 46.71 C
ATOM 7 C4' C B1086 50.247 101.237 113.066 1.00 46.33 C
ATOM 8 O4' C B1086 50.449 102.097 111.920 1.00 44.48 O
ATOM 9 C3' C B1086 49.546 102.117 114.087 1.00 45.84 C
ATOM 10 O3' C B1086 49.827 101.651 115.404 1.00 46.85 O
ATOM 11 C2' C B1086 50.197 103.471 113.845 1.00 45.53 C
ATOM 12 O2' C B1086 51.482 103.545 114.421 1.00 48.35 O
ATOM 13 C1' C B1086 50.393 103.451 112.329 1.00 44.85 C
ATOM 14 N1 C B1086 49.366 104.150 111.527 1.00 44.59 N
ATOM 15 C2 C B1086 49.200 105.544 111.675 1.00 42.68 C
ATOM 16 O2 C B1086 49.858 106.150 112.533 1.00 41.62 O
ATOM 17 N3 C B1086 48.323 106.186 110.879 1.00 42.05 N
ATOM 18 C4 C B1086 47.621 105.504 109.974 1.00 42.98 C
ATOM 19 N4 C B1086 46.791 106.188 109.179 1.00 43.59 N
ATOM 20 C5 C B1086 47.740 104.093 109.833 1.00 42.86 C
ATOM 21 C6 C B1086 48.606 103.462 110.624 1.00 42.42 C
ATOM 22 P U B1087 48.632 101.382 116.440 1.00 47.27 P
ATOM 23 OP1 U B1087 49.207 101.395 117.803 1.00 47.07 O
ATOM 24 OP2 U B1087 47.907 100.178 115.959 1.00 46.84 O
ATOM 25 O5' U B1087 47.692 102.654 116.304 1.00 46.78 O
TER
ATOM 2 P U A1087 48.632 101.382 116.440 1.00 47.27 P
ATOM 3 OP1 U A1087 49.207 101.395 117.803 1.00 47.07 O
ATOM 4 OP2 U A1087 47.907 100.178 115.959 1.00 46.84 O
ATOM 5 O5' U A1087 47.692 102.654 116.304 1.00 46.78 O
ATOM 6 C5' U A1087 48.170 103.950 116.656 1.00 47.49 C
ATOM 7 C4' U A1087 47.084 104.978 116.477 1.00 49.63 C
ATOM 8 O4' U A1087 46.829 105.183 115.057 1.00 50.76 O
ATOM 9 C3' U A1087 45.737 104.658 117.117 1.00 50.03 C
ATOM 10 O3' U A1087 45.178 105.853 117.624 1.00 50.17 O
ATOM 11 C2' U A1087 44.910 104.169 115.933 1.00 51.44 C
ATOM 12 O2' U A1087 43.529 104.381 116.111 1.00 52.45 O
ATOM 13 C1' U A1087 45.443 105.057 114.811 1.00 51.98 C
ATOM 14 N1 U A1087 45.251 104.543 113.445 1.00 52.63 N
ATOM 15 C2 U A1087 44.702 105.405 112.513 1.00 53.85 C
ATOM 16 O2 U A1087 44.364 106.547 112.781 1.00 56.94 O
ATOM 17 N3 U A1087 44.563 104.882 111.252 1.00 51.91 N
ATOM 18 C4 U A1087 44.902 103.616 110.839 1.00 52.49 C
ATOM 19 O4 U A1087 44.774 103.317 109.655 1.00 52.85 O
ATOM 20 C5 U A1087 45.451 102.781 111.859 1.00 53.49 C
ATOM 21 C6 U A1087 45.605 103.261 113.095 1.00 53.43 C
ATOM 22 P C A1088 45.350 106.199 119.178 1.00 54.03 P
ATOM 23 OP1 C A1088 44.785 107.557 119.434 1.00 51.86 O
ATOM 24 OP2 C A1088 46.775 105.921 119.521 1.00 52.56 O
ATOM 25 O5' C A1088 44.424 105.122 119.906 1.00 53.09 O
TER
ATOM 1 O3' C B1085 45.859 99.581 112.154 1.00 48.41 O
ATOM 2 P C B1086 47.238 99.472 111.330 1.00 48.51 P
ATOM 3 OP1 C B1086 47.005 100.072 109.991 1.00 49.45 O
ATOM 4 OP2 C B1086 47.771 98.086 111.426 1.00 47.63 O
ATOM 5 O5' C B1086 48.195 100.463 112.122 1.00 48.84 O
ATOM 6 C5' C B1086 49.460 100.037 112.627 1.00 46.71 C
ATOM 7 C4' C B1086 50.247 101.237 113.066 1.00 46.33 C
ATOM 8 O4' C B1086 50.449 102.097 111.920 1.00 44.48 O
ATOM 9 C3' C B1086 49.546 102.117 114.087 1.00 45.84 C
ATOM 10 O3' C B1086 49.827 101.651 115.404 1.00 46.85 O
ATOM 11 C2' C B1086 50.197 103.471 113.845 1.00 45.53 C
ATOM 12 O2' C B1086 51.482 103.545 114.421 1.00 48.35 O
ATOM 13 C1' C B1086 50.393 103.451 112.329 1.00 44.85 C
ATOM 14 N1 C B1086 49.366 104.150 111.527 1.00 44.59 N
ATOM 15 C2 C B1086 49.200 105.544 111.675 1.00 42.68 C
ATOM 16 O2 C B1086 49.858 106.150 112.533 1.00 41.62 O
ATOM 17 N3 C B1086 48.323 106.186 110.879 1.00 42.05 N
ATOM 18 C4 C B1086 47.621 105.504 109.974 1.00 42.98 C
ATOM 19 N4 C B1086 46.791 106.188 109.179 1.00 43.59 N
ATOM 20 C5 C B1086 47.740 104.093 109.833 1.00 42.86 C
ATOM 21 C6 C B1086 48.606 103.462 110.624 1.00 42.42 C
ATOM 22 P U B1087 48.632 101.382 116.440 1.00 47.27 P
ATOM 23 OP1 U B1087 49.207 101.395 117.803 1.00 47.07 O
ATOM 24 OP2 U B1087 47.907 100.178 115.959 1.00 46.84 O
ATOM 25 O5' U B1087 47.692 102.654 116.304 1.00 46.78 O
TER
Atoms:
C4: (44.902,103.616,110.839)
N3: (44.563,104.882,111.252)
OP1: (49.207,101.395,117.803)
OP2: (47.907,100.178,115.959)
C2: (44.702,105.405,112.513)
C1': (45.443,105.057,114.811)
C3': (45.737,104.658,117.117)
O5': (47.692,102.654,116.304)
O4': (46.829,105.183,115.057)
C5': (48.170,103.950,116.656)
P: (48.632,101.382,116.440)
C4': (47.084,104.978,116.477)
C2': (44.910,104.169,115.933)
O2': (43.529,104.381,116.111)
N1: (45.251,104.543,113.445)
O4: (44.774,103.317,109.655)
O2: (44.364,106.547,112.781)
C6: (45.605,103.261,113.095)
C5: (45.451,102.781,111.859)
O3': (45.178,105.853,117.624)
N3: (44.563,104.882,111.252)
OP1: (49.207,101.395,117.803)
OP2: (47.907,100.178,115.959)
C2: (44.702,105.405,112.513)
C1': (45.443,105.057,114.811)
C3': (45.737,104.658,117.117)
O5': (47.692,102.654,116.304)
O4': (46.829,105.183,115.057)
C5': (48.170,103.950,116.656)
P: (48.632,101.382,116.440)
C4': (47.084,104.978,116.477)
C2': (44.910,104.169,115.933)
O2': (43.529,104.381,116.111)
N1: (45.251,104.543,113.445)
O4: (44.774,103.317,109.655)
O2: (44.364,106.547,112.781)
C6: (45.605,103.261,113.095)
C5: (45.451,102.781,111.859)
O3': (45.178,105.853,117.624)
C2: (49.200,105.544,111.675)
OP1: (47.005,100.072,109.991)
OP2: (47.771,98.086,111.426)
C4: (47.621,105.504,109.974)
O5': (48.195,100.463,112.122)
C3': (49.546,102.117,114.087)
C1': (50.393,103.451,112.329)
O4': (50.449,102.097,111.920)
C5': (49.460,100.037,112.627)
P: (47.238,99.472,111.330)
O2: (49.858,106.150,112.533)
C4': (50.247,101.237,113.066)
C2': (50.197,103.471,113.845)
O2': (51.482,103.545,114.421)
N1: (49.366,104.150,111.527)
N3: (48.323,106.186,110.879)
N4: (46.791,106.188,109.179)
C6: (48.606,103.462,110.624)
C5: (47.740,104.093,109.833)
O3': (49.827,101.651,115.404)
OP1: (47.005,100.072,109.991)
OP2: (47.771,98.086,111.426)
C4: (47.621,105.504,109.974)
O5': (48.195,100.463,112.122)
C3': (49.546,102.117,114.087)
C1': (50.393,103.451,112.329)
O4': (50.449,102.097,111.920)
C5': (49.460,100.037,112.627)
P: (47.238,99.472,111.330)
O2: (49.858,106.150,112.533)
C4': (50.247,101.237,113.066)
C2': (50.197,103.471,113.845)
O2': (51.482,103.545,114.421)
N1: (49.366,104.150,111.527)
N3: (48.323,106.186,110.879)
N4: (46.791,106.188,109.179)
C6: (48.606,103.462,110.624)
C5: (47.740,104.093,109.833)
O3': (49.827,101.651,115.404)
Image (generated by PyMOL):