Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0258:0228
Extra
PDB:
ATOM 1 O3' G A 257 79.786 104.489 0.255 1.00 69.73 O
ATOM 2 P U A 258 78.246 104.493 0.724 1.00 71.50 P
ATOM 3 OP1 U A 258 77.574 103.333 0.079 1.00 72.26 O
ATOM 4 OP2 U A 258 77.694 105.865 0.522 1.00 71.26 O
ATOM 5 O5' U A 258 78.346 104.208 2.290 1.00 72.01 O
ATOM 6 C5' U A 258 79.019 103.027 2.777 1.00 71.79 C
ATOM 7 C4' U A 258 79.360 103.165 4.246 1.00 71.92 C
ATOM 8 O4' U A 258 80.441 104.132 4.419 1.00 69.74 O
ATOM 9 C3' U A 258 78.228 103.623 5.171 1.00 72.93 C
ATOM 10 O3' U A 258 78.323 102.925 6.412 1.00 76.57 O
ATOM 11 C2' U A 258 78.578 105.090 5.416 1.00 71.02 C
ATOM 12 O2' U A 258 78.072 105.594 6.638 1.00 72.28 O
ATOM 13 C1' U A 258 80.100 105.001 5.471 1.00 67.97 C
ATOM 14 N1 U A 258 80.869 106.253 5.367 1.00 63.37 N
ATOM 15 C2 U A 258 82.157 106.249 5.885 1.00 61.33 C
ATOM 16 O2 U A 258 82.686 105.250 6.344 1.00 59.39 O
ATOM 17 N3 U A 258 82.804 107.459 5.844 1.00 59.93 N
ATOM 18 C4 U A 258 82.314 108.647 5.341 1.00 60.04 C
ATOM 19 O4 U A 258 82.980 109.676 5.472 1.00 59.58 O
ATOM 20 C5 U A 258 80.993 108.563 4.788 1.00 59.72 C
ATOM 21 C6 U A 258 80.335 107.399 4.814 1.00 60.71 C
ATOM 22 P C A 259 76.989 102.415 7.155 1.00 79.79 P
ATOM 23 OP1 C A 259 75.872 103.391 6.986 1.00 78.40 O
ATOM 24 OP2 C A 259 77.421 102.013 8.522 1.00 80.10 O
ATOM 25 O5' C A 259 76.588 101.097 6.363 1.00 81.80 O
TER
ATOM 1 O3' C B 227 77.583 113.251 4.930 1.00 67.91 O
ATOM 2 P C B 228 78.994 112.864 4.263 1.00 69.78 P
ATOM 3 OP1 C B 228 79.045 113.587 2.960 1.00 69.43 O
ATOM 4 OP2 C B 228 79.189 111.386 4.303 1.00 68.59 O
ATOM 5 O5' C B 228 80.073 113.502 5.244 1.00 67.36 O
ATOM 6 C5' C B 228 81.433 113.048 5.239 1.00 63.98 C
ATOM 7 C4' C B 228 82.034 113.227 6.603 1.00 62.10 C
ATOM 8 O4' C B 228 81.349 112.366 7.546 1.00 61.20 O
ATOM 9 C3' C B 228 83.487 112.822 6.734 1.00 62.45 C
ATOM 10 O3' C B 228 84.328 113.887 6.288 1.00 62.49 O
ATOM 11 C2' C B 228 83.615 112.589 8.238 1.00 62.82 C
ATOM 12 O2' C B 228 83.757 113.787 8.978 1.00 65.91 O
ATOM 13 C1' C B 228 82.245 111.994 8.582 1.00 60.72 C
ATOM 14 N1 C B 228 82.176 110.525 8.792 1.00 58.39 N
ATOM 15 C2 C B 228 83.200 109.866 9.537 1.00 57.94 C
ATOM 16 O2 C B 228 84.141 110.527 10.009 1.00 57.20 O
ATOM 17 N3 C B 228 83.125 108.524 9.717 1.00 56.41 N
ATOM 18 C4 C B 228 82.098 107.837 9.202 1.00 57.09 C
ATOM 19 N4 C B 228 82.072 106.520 9.394 1.00 55.40 N
ATOM 20 C5 C B 228 81.050 108.475 8.461 1.00 56.62 C
ATOM 21 C6 C B 228 81.130 109.802 8.282 1.00 57.06 C
ATOM 22 P A B 229 85.689 113.564 5.491 1.00 63.06 P
ATOM 23 OP1 A B 229 86.427 114.846 5.388 1.00 61.36 O
ATOM 24 OP2 A B 229 85.342 112.823 4.254 1.00 63.47 O
ATOM 25 O5' A B 229 86.502 112.593 6.457 1.00 58.29 O
TER
ATOM 2 P U A 258 78.246 104.493 0.724 1.00 71.50 P
ATOM 3 OP1 U A 258 77.574 103.333 0.079 1.00 72.26 O
ATOM 4 OP2 U A 258 77.694 105.865 0.522 1.00 71.26 O
ATOM 5 O5' U A 258 78.346 104.208 2.290 1.00 72.01 O
ATOM 6 C5' U A 258 79.019 103.027 2.777 1.00 71.79 C
ATOM 7 C4' U A 258 79.360 103.165 4.246 1.00 71.92 C
ATOM 8 O4' U A 258 80.441 104.132 4.419 1.00 69.74 O
ATOM 9 C3' U A 258 78.228 103.623 5.171 1.00 72.93 C
ATOM 10 O3' U A 258 78.323 102.925 6.412 1.00 76.57 O
ATOM 11 C2' U A 258 78.578 105.090 5.416 1.00 71.02 C
ATOM 12 O2' U A 258 78.072 105.594 6.638 1.00 72.28 O
ATOM 13 C1' U A 258 80.100 105.001 5.471 1.00 67.97 C
ATOM 14 N1 U A 258 80.869 106.253 5.367 1.00 63.37 N
ATOM 15 C2 U A 258 82.157 106.249 5.885 1.00 61.33 C
ATOM 16 O2 U A 258 82.686 105.250 6.344 1.00 59.39 O
ATOM 17 N3 U A 258 82.804 107.459 5.844 1.00 59.93 N
ATOM 18 C4 U A 258 82.314 108.647 5.341 1.00 60.04 C
ATOM 19 O4 U A 258 82.980 109.676 5.472 1.00 59.58 O
ATOM 20 C5 U A 258 80.993 108.563 4.788 1.00 59.72 C
ATOM 21 C6 U A 258 80.335 107.399 4.814 1.00 60.71 C
ATOM 22 P C A 259 76.989 102.415 7.155 1.00 79.79 P
ATOM 23 OP1 C A 259 75.872 103.391 6.986 1.00 78.40 O
ATOM 24 OP2 C A 259 77.421 102.013 8.522 1.00 80.10 O
ATOM 25 O5' C A 259 76.588 101.097 6.363 1.00 81.80 O
TER
ATOM 1 O3' C B 227 77.583 113.251 4.930 1.00 67.91 O
ATOM 2 P C B 228 78.994 112.864 4.263 1.00 69.78 P
ATOM 3 OP1 C B 228 79.045 113.587 2.960 1.00 69.43 O
ATOM 4 OP2 C B 228 79.189 111.386 4.303 1.00 68.59 O
ATOM 5 O5' C B 228 80.073 113.502 5.244 1.00 67.36 O
ATOM 6 C5' C B 228 81.433 113.048 5.239 1.00 63.98 C
ATOM 7 C4' C B 228 82.034 113.227 6.603 1.00 62.10 C
ATOM 8 O4' C B 228 81.349 112.366 7.546 1.00 61.20 O
ATOM 9 C3' C B 228 83.487 112.822 6.734 1.00 62.45 C
ATOM 10 O3' C B 228 84.328 113.887 6.288 1.00 62.49 O
ATOM 11 C2' C B 228 83.615 112.589 8.238 1.00 62.82 C
ATOM 12 O2' C B 228 83.757 113.787 8.978 1.00 65.91 O
ATOM 13 C1' C B 228 82.245 111.994 8.582 1.00 60.72 C
ATOM 14 N1 C B 228 82.176 110.525 8.792 1.00 58.39 N
ATOM 15 C2 C B 228 83.200 109.866 9.537 1.00 57.94 C
ATOM 16 O2 C B 228 84.141 110.527 10.009 1.00 57.20 O
ATOM 17 N3 C B 228 83.125 108.524 9.717 1.00 56.41 N
ATOM 18 C4 C B 228 82.098 107.837 9.202 1.00 57.09 C
ATOM 19 N4 C B 228 82.072 106.520 9.394 1.00 55.40 N
ATOM 20 C5 C B 228 81.050 108.475 8.461 1.00 56.62 C
ATOM 21 C6 C B 228 81.130 109.802 8.282 1.00 57.06 C
ATOM 22 P A B 229 85.689 113.564 5.491 1.00 63.06 P
ATOM 23 OP1 A B 229 86.427 114.846 5.388 1.00 61.36 O
ATOM 24 OP2 A B 229 85.342 112.823 4.254 1.00 63.47 O
ATOM 25 O5' A B 229 86.502 112.593 6.457 1.00 58.29 O
TER
Atoms:
C4: (82.314,108.647,5.341)
N3: (82.804,107.459,5.844)
OP1: (77.574,103.333,0.079)
OP2: (77.694,105.865,0.522)
C2: (82.157,106.249,5.885)
C1': (80.100,105.001,5.471)
C3': (78.228,103.623,5.171)
O5': (78.346,104.208,2.290)
O4': (80.441,104.132,4.419)
C5': (79.019,103.027,2.777)
P: (78.246,104.493,0.724)
C4': (79.360,103.165,4.246)
C2': (78.578,105.090,5.416)
O2': (78.072,105.594,6.638)
N1: (80.869,106.253,5.367)
O4: (82.980,109.676,5.472)
O2: (82.686,105.250,6.344)
C6: (80.335,107.399,4.814)
C5: (80.993,108.563,4.788)
O3': (78.323,102.925,6.412)
N3: (82.804,107.459,5.844)
OP1: (77.574,103.333,0.079)
OP2: (77.694,105.865,0.522)
C2: (82.157,106.249,5.885)
C1': (80.100,105.001,5.471)
C3': (78.228,103.623,5.171)
O5': (78.346,104.208,2.290)
O4': (80.441,104.132,4.419)
C5': (79.019,103.027,2.777)
P: (78.246,104.493,0.724)
C4': (79.360,103.165,4.246)
C2': (78.578,105.090,5.416)
O2': (78.072,105.594,6.638)
N1: (80.869,106.253,5.367)
O4: (82.980,109.676,5.472)
O2: (82.686,105.250,6.344)
C6: (80.335,107.399,4.814)
C5: (80.993,108.563,4.788)
O3': (78.323,102.925,6.412)
C2: (83.200,109.866,9.537)
OP1: (79.045,113.587,2.960)
OP2: (79.189,111.386,4.303)
C4: (82.098,107.837,9.202)
O5': (80.073,113.502,5.244)
C3': (83.487,112.822,6.734)
C1': (82.245,111.994,8.582)
O4': (81.349,112.366,7.546)
C5': (81.433,113.048,5.239)
P: (78.994,112.864,4.263)
O2: (84.141,110.527,10.009)
C4': (82.034,113.227,6.603)
C2': (83.615,112.589,8.238)
O2': (83.757,113.787,8.978)
N1: (82.176,110.525,8.792)
N3: (83.125,108.524,9.717)
N4: (82.072,106.520,9.394)
C6: (81.130,109.802,8.282)
C5: (81.050,108.475,8.461)
O3': (84.328,113.887,6.288)
OP1: (79.045,113.587,2.960)
OP2: (79.189,111.386,4.303)
C4: (82.098,107.837,9.202)
O5': (80.073,113.502,5.244)
C3': (83.487,112.822,6.734)
C1': (82.245,111.994,8.582)
O4': (81.349,112.366,7.546)
C5': (81.433,113.048,5.239)
P: (78.994,112.864,4.263)
O2: (84.141,110.527,10.009)
C4': (82.034,113.227,6.603)
C2': (83.615,112.589,8.238)
O2': (83.757,113.787,8.978)
N1: (82.176,110.525,8.792)
N3: (83.125,108.524,9.717)
N4: (82.072,106.520,9.394)
C6: (81.130,109.802,8.282)
C5: (81.050,108.475,8.461)
O3': (84.328,113.887,6.288)
Image (generated by PyMOL):