Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01087:01086
Extra
PDB:
ATOM 1 O3' C A1086 49.670 101.478 115.007 1.00 47.46 O
ATOM 2 P U A1087 48.463 101.128 116.009 1.00 48.36 P
ATOM 3 OP1 U A1087 49.032 101.088 117.380 1.00 47.87 O
ATOM 4 OP2 U A1087 47.769 99.926 115.472 1.00 47.26 O
ATOM 5 O5' U A1087 47.508 102.398 115.912 1.00 47.41 O
ATOM 6 C5' U A1087 48.009 103.702 116.235 1.00 47.86 C
ATOM 7 C4' U A1087 46.934 104.748 116.074 1.00 48.98 C
ATOM 8 O4' U A1087 46.650 104.950 114.663 1.00 49.34 O
ATOM 9 C3' U A1087 45.593 104.476 116.752 1.00 49.57 C
ATOM 10 O3' U A1087 45.073 105.698 117.252 1.00 51.95 O
ATOM 11 C2' U A1087 44.730 103.995 115.591 1.00 50.00 C
ATOM 12 O2' U A1087 43.354 104.232 115.789 1.00 50.81 O
ATOM 13 C1' U A1087 45.257 104.866 114.454 1.00 50.04 C
ATOM 14 N1 U A1087 45.010 104.371 113.092 1.00 50.08 N
ATOM 15 C2 U A1087 44.458 105.261 112.187 1.00 51.43 C
ATOM 16 O2 U A1087 44.167 106.410 112.478 1.00 52.80 O
ATOM 17 N3 U A1087 44.256 104.756 110.925 1.00 51.39 N
ATOM 18 C4 U A1087 44.540 103.478 110.485 1.00 51.85 C
ATOM 19 O4 U A1087 44.332 103.184 109.305 1.00 51.19 O
ATOM 20 C5 U A1087 45.104 102.615 111.482 1.00 51.46 C
ATOM 21 C6 U A1087 45.315 103.080 112.719 1.00 50.50 C
ATOM 22 P C A1088 45.173 106.018 118.822 1.00 57.29 P
ATOM 23 OP1 C A1088 44.611 107.383 119.058 1.00 56.51 O
ATOM 24 OP2 C A1088 46.565 105.710 119.261 1.00 56.48 O
ATOM 25 O5' C A1088 44.202 104.946 119.495 1.00 57.09 O
TER
ATOM 1 O3' C B1085 45.671 99.356 111.833 1.00 46.83 O
ATOM 2 P C B1086 47.099 99.203 111.093 1.00 48.27 P
ATOM 3 OP1 C B1086 46.983 99.737 109.715 1.00 48.36 O
ATOM 4 OP2 C B1086 47.594 97.813 111.296 1.00 47.35 O
ATOM 5 O5' C B1086 48.037 100.207 111.888 1.00 46.14 O
ATOM 6 C5' C B1086 49.373 99.852 112.238 1.00 45.90 C
ATOM 7 C4' C B1086 50.121 101.081 112.667 1.00 45.84 C
ATOM 8 O4' C B1086 50.308 101.940 111.521 1.00 44.41 O
ATOM 9 C3' C B1086 49.395 101.940 113.686 1.00 44.93 C
ATOM 10 O3' C B1086 49.670 101.478 115.007 1.00 47.46 O
ATOM 11 C2' C B1086 50.004 103.313 113.442 1.00 44.48 C
ATOM 12 O2' C B1086 51.258 103.436 114.083 1.00 42.97 O
ATOM 13 C1' C B1086 50.209 103.295 111.921 1.00 43.83 C
ATOM 14 N1 C B1086 49.160 103.943 111.101 1.00 43.24 N
ATOM 15 C2 C B1086 48.941 105.327 111.222 1.00 42.24 C
ATOM 16 O2 C B1086 49.617 105.982 112.027 1.00 41.79 O
ATOM 17 N3 C B1086 47.999 105.910 110.453 1.00 42.65 N
ATOM 18 C4 C B1086 47.292 105.178 109.589 1.00 43.93 C
ATOM 19 N4 C B1086 46.374 105.803 108.837 1.00 45.42 N
ATOM 20 C5 C B1086 47.489 103.775 109.451 1.00 42.24 C
ATOM 21 C6 C B1086 48.417 103.205 110.220 1.00 42.32 C
ATOM 22 P U B1087 48.463 101.128 116.009 1.00 48.36 P
ATOM 23 OP1 U B1087 49.032 101.088 117.380 1.00 47.87 O
ATOM 24 OP2 U B1087 47.769 99.926 115.472 1.00 47.26 O
ATOM 25 O5' U B1087 47.508 102.398 115.912 1.00 47.41 O
TER
ATOM 2 P U A1087 48.463 101.128 116.009 1.00 48.36 P
ATOM 3 OP1 U A1087 49.032 101.088 117.380 1.00 47.87 O
ATOM 4 OP2 U A1087 47.769 99.926 115.472 1.00 47.26 O
ATOM 5 O5' U A1087 47.508 102.398 115.912 1.00 47.41 O
ATOM 6 C5' U A1087 48.009 103.702 116.235 1.00 47.86 C
ATOM 7 C4' U A1087 46.934 104.748 116.074 1.00 48.98 C
ATOM 8 O4' U A1087 46.650 104.950 114.663 1.00 49.34 O
ATOM 9 C3' U A1087 45.593 104.476 116.752 1.00 49.57 C
ATOM 10 O3' U A1087 45.073 105.698 117.252 1.00 51.95 O
ATOM 11 C2' U A1087 44.730 103.995 115.591 1.00 50.00 C
ATOM 12 O2' U A1087 43.354 104.232 115.789 1.00 50.81 O
ATOM 13 C1' U A1087 45.257 104.866 114.454 1.00 50.04 C
ATOM 14 N1 U A1087 45.010 104.371 113.092 1.00 50.08 N
ATOM 15 C2 U A1087 44.458 105.261 112.187 1.00 51.43 C
ATOM 16 O2 U A1087 44.167 106.410 112.478 1.00 52.80 O
ATOM 17 N3 U A1087 44.256 104.756 110.925 1.00 51.39 N
ATOM 18 C4 U A1087 44.540 103.478 110.485 1.00 51.85 C
ATOM 19 O4 U A1087 44.332 103.184 109.305 1.00 51.19 O
ATOM 20 C5 U A1087 45.104 102.615 111.482 1.00 51.46 C
ATOM 21 C6 U A1087 45.315 103.080 112.719 1.00 50.50 C
ATOM 22 P C A1088 45.173 106.018 118.822 1.00 57.29 P
ATOM 23 OP1 C A1088 44.611 107.383 119.058 1.00 56.51 O
ATOM 24 OP2 C A1088 46.565 105.710 119.261 1.00 56.48 O
ATOM 25 O5' C A1088 44.202 104.946 119.495 1.00 57.09 O
TER
ATOM 1 O3' C B1085 45.671 99.356 111.833 1.00 46.83 O
ATOM 2 P C B1086 47.099 99.203 111.093 1.00 48.27 P
ATOM 3 OP1 C B1086 46.983 99.737 109.715 1.00 48.36 O
ATOM 4 OP2 C B1086 47.594 97.813 111.296 1.00 47.35 O
ATOM 5 O5' C B1086 48.037 100.207 111.888 1.00 46.14 O
ATOM 6 C5' C B1086 49.373 99.852 112.238 1.00 45.90 C
ATOM 7 C4' C B1086 50.121 101.081 112.667 1.00 45.84 C
ATOM 8 O4' C B1086 50.308 101.940 111.521 1.00 44.41 O
ATOM 9 C3' C B1086 49.395 101.940 113.686 1.00 44.93 C
ATOM 10 O3' C B1086 49.670 101.478 115.007 1.00 47.46 O
ATOM 11 C2' C B1086 50.004 103.313 113.442 1.00 44.48 C
ATOM 12 O2' C B1086 51.258 103.436 114.083 1.00 42.97 O
ATOM 13 C1' C B1086 50.209 103.295 111.921 1.00 43.83 C
ATOM 14 N1 C B1086 49.160 103.943 111.101 1.00 43.24 N
ATOM 15 C2 C B1086 48.941 105.327 111.222 1.00 42.24 C
ATOM 16 O2 C B1086 49.617 105.982 112.027 1.00 41.79 O
ATOM 17 N3 C B1086 47.999 105.910 110.453 1.00 42.65 N
ATOM 18 C4 C B1086 47.292 105.178 109.589 1.00 43.93 C
ATOM 19 N4 C B1086 46.374 105.803 108.837 1.00 45.42 N
ATOM 20 C5 C B1086 47.489 103.775 109.451 1.00 42.24 C
ATOM 21 C6 C B1086 48.417 103.205 110.220 1.00 42.32 C
ATOM 22 P U B1087 48.463 101.128 116.009 1.00 48.36 P
ATOM 23 OP1 U B1087 49.032 101.088 117.380 1.00 47.87 O
ATOM 24 OP2 U B1087 47.769 99.926 115.472 1.00 47.26 O
ATOM 25 O5' U B1087 47.508 102.398 115.912 1.00 47.41 O
TER
Atoms:
C4: (44.540,103.478,110.485)
N3: (44.256,104.756,110.925)
OP1: (49.032,101.088,117.380)
OP2: (47.769,99.926,115.472)
C2: (44.458,105.261,112.187)
C1': (45.257,104.866,114.454)
C3': (45.593,104.476,116.752)
O5': (47.508,102.398,115.912)
O4': (46.650,104.950,114.663)
C5': (48.009,103.702,116.235)
P: (48.463,101.128,116.009)
C4': (46.934,104.748,116.074)
C2': (44.730,103.995,115.591)
O2': (43.354,104.232,115.789)
N1: (45.010,104.371,113.092)
O4: (44.332,103.184,109.305)
O2: (44.167,106.410,112.478)
C6: (45.315,103.080,112.719)
C5: (45.104,102.615,111.482)
O3': (45.073,105.698,117.252)
N3: (44.256,104.756,110.925)
OP1: (49.032,101.088,117.380)
OP2: (47.769,99.926,115.472)
C2: (44.458,105.261,112.187)
C1': (45.257,104.866,114.454)
C3': (45.593,104.476,116.752)
O5': (47.508,102.398,115.912)
O4': (46.650,104.950,114.663)
C5': (48.009,103.702,116.235)
P: (48.463,101.128,116.009)
C4': (46.934,104.748,116.074)
C2': (44.730,103.995,115.591)
O2': (43.354,104.232,115.789)
N1: (45.010,104.371,113.092)
O4: (44.332,103.184,109.305)
O2: (44.167,106.410,112.478)
C6: (45.315,103.080,112.719)
C5: (45.104,102.615,111.482)
O3': (45.073,105.698,117.252)
C2: (48.941,105.327,111.222)
OP1: (46.983,99.737,109.715)
OP2: (47.594,97.813,111.296)
C4: (47.292,105.178,109.589)
O5': (48.037,100.207,111.888)
C3': (49.395,101.940,113.686)
C1': (50.209,103.295,111.921)
O4': (50.308,101.940,111.521)
C5': (49.373,99.852,112.238)
P: (47.099,99.203,111.093)
O2: (49.617,105.982,112.027)
C4': (50.121,101.081,112.667)
C2': (50.004,103.313,113.442)
O2': (51.258,103.436,114.083)
N1: (49.160,103.943,111.101)
N3: (47.999,105.910,110.453)
N4: (46.374,105.803,108.837)
C6: (48.417,103.205,110.220)
C5: (47.489,103.775,109.451)
O3': (49.670,101.478,115.007)
OP1: (46.983,99.737,109.715)
OP2: (47.594,97.813,111.296)
C4: (47.292,105.178,109.589)
O5': (48.037,100.207,111.888)
C3': (49.395,101.940,113.686)
C1': (50.209,103.295,111.921)
O4': (50.308,101.940,111.521)
C5': (49.373,99.852,112.238)
P: (47.099,99.203,111.093)
O2: (49.617,105.982,112.027)
C4': (50.121,101.081,112.667)
C2': (50.004,103.313,113.442)
O2': (51.258,103.436,114.083)
N1: (49.160,103.943,111.101)
N3: (47.999,105.910,110.453)
N4: (46.374,105.803,108.837)
C6: (48.417,103.205,110.220)
C5: (47.489,103.775,109.451)
O3': (49.670,101.478,115.007)
Image (generated by PyMOL):