Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0258:0228
Extra
PDB:
ATOM 1 O3' G A 257 79.379 104.289 -0.038 1.00 62.46 O
ATOM 2 P U A 258 77.897 104.262 0.574 1.00 64.22 P
ATOM 3 OP1 U A 258 77.204 103.044 0.077 1.00 65.22 O
ATOM 4 OP2 U A 258 77.287 105.599 0.338 1.00 62.94 O
ATOM 5 O5' U A 258 78.164 104.078 2.132 1.00 64.39 O
ATOM 6 C5' U A 258 78.915 102.944 2.614 1.00 64.08 C
ATOM 7 C4' U A 258 79.202 103.084 4.094 1.00 64.01 C
ATOM 8 O4' U A 258 80.267 104.059 4.314 1.00 61.05 O
ATOM 9 C3' U A 258 78.024 103.538 4.958 1.00 63.60 C
ATOM 10 O3' U A 258 78.085 102.885 6.224 1.00 66.12 O
ATOM 11 C2' U A 258 78.320 105.023 5.147 1.00 61.35 C
ATOM 12 O2' U A 258 77.712 105.571 6.298 1.00 61.98 O
ATOM 13 C1' U A 258 79.839 104.980 5.290 1.00 58.81 C
ATOM 14 N1 U A 258 80.605 106.230 5.164 1.00 54.54 N
ATOM 15 C2 U A 258 81.913 106.211 5.616 1.00 53.49 C
ATOM 16 O2 U A 258 82.459 105.201 6.023 1.00 53.25 O
ATOM 17 N3 U A 258 82.563 107.418 5.570 1.00 52.77 N
ATOM 18 C4 U A 258 82.058 108.617 5.120 1.00 53.00 C
ATOM 19 O4 U A 258 82.726 109.645 5.265 1.00 52.70 O
ATOM 20 C5 U A 258 80.714 108.548 4.624 1.00 52.99 C
ATOM 21 C6 U A 258 80.052 107.385 4.659 1.00 53.49 C
ATOM 22 P C A 259 76.738 102.351 6.914 1.00 68.59 P
ATOM 23 OP1 C A 259 75.637 103.331 6.721 1.00 67.10 O
ATOM 24 OP2 C A 259 77.120 101.934 8.283 1.00 69.26 O
ATOM 25 O5' C A 259 76.371 101.044 6.087 1.00 71.27 O
TER
ATOM 1 O3' C B 227 77.300 113.093 4.679 1.00 59.71 O
ATOM 2 P C B 228 78.734 112.755 4.027 1.00 60.27 P
ATOM 3 OP1 C B 228 78.862 113.642 2.840 1.00 60.77 O
ATOM 4 OP2 C B 228 78.896 111.286 3.866 1.00 59.21 O
ATOM 5 O5' C B 228 79.768 113.242 5.138 1.00 57.92 O
ATOM 6 C5' C B 228 81.141 112.834 5.108 1.00 54.27 C
ATOM 7 C4' C B 228 81.765 113.056 6.457 1.00 52.94 C
ATOM 8 O4' C B 228 81.065 112.251 7.435 1.00 51.18 O
ATOM 9 C3' C B 228 83.218 112.635 6.586 1.00 54.27 C
ATOM 10 O3' C B 228 84.081 113.681 6.116 1.00 56.51 O
ATOM 11 C2' C B 228 83.355 112.391 8.089 1.00 53.73 C
ATOM 12 O2' C B 228 83.563 113.565 8.854 1.00 54.59 O
ATOM 13 C1' C B 228 81.972 111.827 8.441 1.00 52.46 C
ATOM 14 N1 C B 228 81.867 110.356 8.594 1.00 51.57 N
ATOM 15 C2 C B 228 82.827 109.654 9.373 1.00 51.23 C
ATOM 16 O2 C B 228 83.742 110.278 9.929 1.00 50.93 O
ATOM 17 N3 C B 228 82.722 108.314 9.494 1.00 51.08 N
ATOM 18 C4 C B 228 81.722 107.665 8.892 1.00 52.58 C
ATOM 19 N4 C B 228 81.667 106.336 9.029 1.00 52.66 N
ATOM 20 C5 C B 228 80.734 108.345 8.117 1.00 52.13 C
ATOM 21 C6 C B 228 80.846 109.673 7.994 1.00 51.32 C
ATOM 22 P A B 229 85.437 113.320 5.322 1.00 57.05 P
ATOM 23 OP1 A B 229 86.231 114.569 5.205 1.00 55.81 O
ATOM 24 OP2 A B 229 85.079 112.564 4.091 1.00 56.44 O
ATOM 25 O5' A B 229 86.217 112.360 6.321 1.00 55.06 O
TER
ATOM 2 P U A 258 77.897 104.262 0.574 1.00 64.22 P
ATOM 3 OP1 U A 258 77.204 103.044 0.077 1.00 65.22 O
ATOM 4 OP2 U A 258 77.287 105.599 0.338 1.00 62.94 O
ATOM 5 O5' U A 258 78.164 104.078 2.132 1.00 64.39 O
ATOM 6 C5' U A 258 78.915 102.944 2.614 1.00 64.08 C
ATOM 7 C4' U A 258 79.202 103.084 4.094 1.00 64.01 C
ATOM 8 O4' U A 258 80.267 104.059 4.314 1.00 61.05 O
ATOM 9 C3' U A 258 78.024 103.538 4.958 1.00 63.60 C
ATOM 10 O3' U A 258 78.085 102.885 6.224 1.00 66.12 O
ATOM 11 C2' U A 258 78.320 105.023 5.147 1.00 61.35 C
ATOM 12 O2' U A 258 77.712 105.571 6.298 1.00 61.98 O
ATOM 13 C1' U A 258 79.839 104.980 5.290 1.00 58.81 C
ATOM 14 N1 U A 258 80.605 106.230 5.164 1.00 54.54 N
ATOM 15 C2 U A 258 81.913 106.211 5.616 1.00 53.49 C
ATOM 16 O2 U A 258 82.459 105.201 6.023 1.00 53.25 O
ATOM 17 N3 U A 258 82.563 107.418 5.570 1.00 52.77 N
ATOM 18 C4 U A 258 82.058 108.617 5.120 1.00 53.00 C
ATOM 19 O4 U A 258 82.726 109.645 5.265 1.00 52.70 O
ATOM 20 C5 U A 258 80.714 108.548 4.624 1.00 52.99 C
ATOM 21 C6 U A 258 80.052 107.385 4.659 1.00 53.49 C
ATOM 22 P C A 259 76.738 102.351 6.914 1.00 68.59 P
ATOM 23 OP1 C A 259 75.637 103.331 6.721 1.00 67.10 O
ATOM 24 OP2 C A 259 77.120 101.934 8.283 1.00 69.26 O
ATOM 25 O5' C A 259 76.371 101.044 6.087 1.00 71.27 O
TER
ATOM 1 O3' C B 227 77.300 113.093 4.679 1.00 59.71 O
ATOM 2 P C B 228 78.734 112.755 4.027 1.00 60.27 P
ATOM 3 OP1 C B 228 78.862 113.642 2.840 1.00 60.77 O
ATOM 4 OP2 C B 228 78.896 111.286 3.866 1.00 59.21 O
ATOM 5 O5' C B 228 79.768 113.242 5.138 1.00 57.92 O
ATOM 6 C5' C B 228 81.141 112.834 5.108 1.00 54.27 C
ATOM 7 C4' C B 228 81.765 113.056 6.457 1.00 52.94 C
ATOM 8 O4' C B 228 81.065 112.251 7.435 1.00 51.18 O
ATOM 9 C3' C B 228 83.218 112.635 6.586 1.00 54.27 C
ATOM 10 O3' C B 228 84.081 113.681 6.116 1.00 56.51 O
ATOM 11 C2' C B 228 83.355 112.391 8.089 1.00 53.73 C
ATOM 12 O2' C B 228 83.563 113.565 8.854 1.00 54.59 O
ATOM 13 C1' C B 228 81.972 111.827 8.441 1.00 52.46 C
ATOM 14 N1 C B 228 81.867 110.356 8.594 1.00 51.57 N
ATOM 15 C2 C B 228 82.827 109.654 9.373 1.00 51.23 C
ATOM 16 O2 C B 228 83.742 110.278 9.929 1.00 50.93 O
ATOM 17 N3 C B 228 82.722 108.314 9.494 1.00 51.08 N
ATOM 18 C4 C B 228 81.722 107.665 8.892 1.00 52.58 C
ATOM 19 N4 C B 228 81.667 106.336 9.029 1.00 52.66 N
ATOM 20 C5 C B 228 80.734 108.345 8.117 1.00 52.13 C
ATOM 21 C6 C B 228 80.846 109.673 7.994 1.00 51.32 C
ATOM 22 P A B 229 85.437 113.320 5.322 1.00 57.05 P
ATOM 23 OP1 A B 229 86.231 114.569 5.205 1.00 55.81 O
ATOM 24 OP2 A B 229 85.079 112.564 4.091 1.00 56.44 O
ATOM 25 O5' A B 229 86.217 112.360 6.321 1.00 55.06 O
TER
Atoms:
C4: (82.058,108.617,5.120)
N3: (82.563,107.418,5.570)
OP1: (77.204,103.044,0.077)
OP2: (77.287,105.599,0.338)
C2: (81.913,106.211,5.616)
C1': (79.839,104.980,5.290)
C3': (78.024,103.538,4.958)
O5': (78.164,104.078,2.132)
O4': (80.267,104.059,4.314)
C5': (78.915,102.944,2.614)
P: (77.897,104.262,0.574)
C4': (79.202,103.084,4.094)
C2': (78.320,105.023,5.147)
O2': (77.712,105.571,6.298)
N1: (80.605,106.230,5.164)
O4: (82.726,109.645,5.265)
O2: (82.459,105.201,6.023)
C6: (80.052,107.385,4.659)
C5: (80.714,108.548,4.624)
O3': (78.085,102.885,6.224)
N3: (82.563,107.418,5.570)
OP1: (77.204,103.044,0.077)
OP2: (77.287,105.599,0.338)
C2: (81.913,106.211,5.616)
C1': (79.839,104.980,5.290)
C3': (78.024,103.538,4.958)
O5': (78.164,104.078,2.132)
O4': (80.267,104.059,4.314)
C5': (78.915,102.944,2.614)
P: (77.897,104.262,0.574)
C4': (79.202,103.084,4.094)
C2': (78.320,105.023,5.147)
O2': (77.712,105.571,6.298)
N1: (80.605,106.230,5.164)
O4: (82.726,109.645,5.265)
O2: (82.459,105.201,6.023)
C6: (80.052,107.385,4.659)
C5: (80.714,108.548,4.624)
O3': (78.085,102.885,6.224)
C2: (82.827,109.654,9.373)
OP1: (78.862,113.642,2.840)
OP2: (78.896,111.286,3.866)
C4: (81.722,107.665,8.892)
O5': (79.768,113.242,5.138)
C3': (83.218,112.635,6.586)
C1': (81.972,111.827,8.441)
O4': (81.065,112.251,7.435)
C5': (81.141,112.834,5.108)
P: (78.734,112.755,4.027)
O2: (83.742,110.278,9.929)
C4': (81.765,113.056,6.457)
C2': (83.355,112.391,8.089)
O2': (83.563,113.565,8.854)
N1: (81.867,110.356,8.594)
N3: (82.722,108.314,9.494)
N4: (81.667,106.336,9.029)
C6: (80.846,109.673,7.994)
C5: (80.734,108.345,8.117)
O3': (84.081,113.681,6.116)
OP1: (78.862,113.642,2.840)
OP2: (78.896,111.286,3.866)
C4: (81.722,107.665,8.892)
O5': (79.768,113.242,5.138)
C3': (83.218,112.635,6.586)
C1': (81.972,111.827,8.441)
O4': (81.065,112.251,7.435)
C5': (81.141,112.834,5.108)
P: (78.734,112.755,4.027)
O2: (83.742,110.278,9.929)
C4': (81.765,113.056,6.457)
C2': (83.355,112.391,8.089)
O2': (83.563,113.565,8.854)
N1: (81.867,110.356,8.594)
N3: (82.722,108.314,9.494)
N4: (81.667,106.336,9.029)
C6: (80.846,109.673,7.994)
C5: (80.734,108.345,8.117)
O3': (84.081,113.681,6.116)
Image (generated by PyMOL):