Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0258:0228
Extra
PDB:
ATOM 1 O3' G A 257 79.257 104.333 -0.049 1.00 49.52 O
ATOM 2 P U A 258 77.760 104.290 0.524 1.00 50.06 P
ATOM 3 OP1 U A 258 77.098 103.084 -0.029 1.00 50.79 O
ATOM 4 OP2 U A 258 77.136 105.621 0.326 1.00 49.14 O
ATOM 5 O5' U A 258 77.979 104.067 2.083 1.00 51.34 O
ATOM 6 C5' U A 258 78.659 102.897 2.563 1.00 51.83 C
ATOM 7 C4' U A 258 78.949 103.020 4.041 1.00 52.89 C
ATOM 8 O4' U A 258 80.024 103.982 4.254 1.00 51.73 O
ATOM 9 C3' U A 258 77.780 103.479 4.916 1.00 53.22 C
ATOM 10 O3' U A 258 77.794 102.777 6.156 1.00 55.10 O
ATOM 11 C2' U A 258 78.109 104.951 5.154 1.00 51.55 C
ATOM 12 O2' U A 258 77.536 105.464 6.341 1.00 52.52 O
ATOM 13 C1' U A 258 79.631 104.888 5.259 1.00 50.22 C
ATOM 14 N1 U A 258 80.390 106.145 5.119 1.00 47.10 N
ATOM 15 C2 U A 258 81.724 106.137 5.514 1.00 45.42 C
ATOM 16 O2 U A 258 82.304 105.134 5.882 1.00 43.53 O
ATOM 17 N3 U A 258 82.355 107.354 5.453 1.00 45.27 N
ATOM 18 C4 U A 258 81.815 108.553 5.031 1.00 45.85 C
ATOM 19 O4 U A 258 82.482 109.587 5.137 1.00 45.84 O
ATOM 20 C5 U A 258 80.453 108.472 4.593 1.00 45.64 C
ATOM 21 C6 U A 258 79.804 107.301 4.648 1.00 46.09 C
ATOM 22 P C A 259 76.414 102.244 6.786 1.00 57.37 P
ATOM 23 OP1 C A 259 75.337 103.246 6.581 1.00 56.23 O
ATOM 24 OP2 C A 259 76.732 101.777 8.155 1.00 57.95 O
ATOM 25 O5' C A 259 76.050 100.962 5.917 1.00 60.31 O
TER
ATOM 1 O3' C B 227 77.105 112.977 4.599 1.00 46.93 O
ATOM 2 P C B 228 78.528 112.595 3.959 1.00 48.89 P
ATOM 3 OP1 C B 228 78.632 113.388 2.705 1.00 49.04 O
ATOM 4 OP2 C B 228 78.685 111.117 3.912 1.00 46.86 O
ATOM 5 O5' C B 228 79.580 113.158 5.015 1.00 47.81 O
ATOM 6 C5' C B 228 80.949 112.737 4.992 1.00 45.54 C
ATOM 7 C4' C B 228 81.587 112.999 6.329 1.00 45.81 C
ATOM 8 O4' C B 228 80.916 112.219 7.352 1.00 44.52 O
ATOM 9 C3' C B 228 83.046 112.596 6.444 1.00 47.02 C
ATOM 10 O3' C B 228 83.879 113.641 5.927 1.00 47.48 O
ATOM 11 C2' C B 228 83.214 112.427 7.952 1.00 47.70 C
ATOM 12 O2' C B 228 83.395 113.653 8.635 1.00 50.85 O
ATOM 13 C1' C B 228 81.849 111.859 8.362 1.00 46.80 C
ATOM 14 N1 C B 228 81.792 110.393 8.593 1.00 47.16 N
ATOM 15 C2 C B 228 82.780 109.766 9.406 1.00 47.39 C
ATOM 16 O2 C B 228 83.665 110.454 9.937 1.00 47.15 O
ATOM 17 N3 C B 228 82.730 108.423 9.588 1.00 47.07 N
ATOM 18 C4 C B 228 81.759 107.706 9.012 1.00 47.25 C
ATOM 19 N4 C B 228 81.764 106.388 9.197 1.00 45.77 N
ATOM 20 C5 C B 228 80.741 108.311 8.213 1.00 47.79 C
ATOM 21 C6 C B 228 80.797 109.641 8.029 1.00 47.92 C
ATOM 22 P A B 229 85.293 113.291 5.240 1.00 46.59 P
ATOM 23 OP1 A B 229 86.065 114.555 5.199 1.00 45.07 O
ATOM 24 OP2 A B 229 85.046 112.550 3.983 1.00 47.01 O
ATOM 25 O5' A B 229 86.000 112.306 6.270 1.00 44.30 O
TER
ATOM 2 P U A 258 77.760 104.290 0.524 1.00 50.06 P
ATOM 3 OP1 U A 258 77.098 103.084 -0.029 1.00 50.79 O
ATOM 4 OP2 U A 258 77.136 105.621 0.326 1.00 49.14 O
ATOM 5 O5' U A 258 77.979 104.067 2.083 1.00 51.34 O
ATOM 6 C5' U A 258 78.659 102.897 2.563 1.00 51.83 C
ATOM 7 C4' U A 258 78.949 103.020 4.041 1.00 52.89 C
ATOM 8 O4' U A 258 80.024 103.982 4.254 1.00 51.73 O
ATOM 9 C3' U A 258 77.780 103.479 4.916 1.00 53.22 C
ATOM 10 O3' U A 258 77.794 102.777 6.156 1.00 55.10 O
ATOM 11 C2' U A 258 78.109 104.951 5.154 1.00 51.55 C
ATOM 12 O2' U A 258 77.536 105.464 6.341 1.00 52.52 O
ATOM 13 C1' U A 258 79.631 104.888 5.259 1.00 50.22 C
ATOM 14 N1 U A 258 80.390 106.145 5.119 1.00 47.10 N
ATOM 15 C2 U A 258 81.724 106.137 5.514 1.00 45.42 C
ATOM 16 O2 U A 258 82.304 105.134 5.882 1.00 43.53 O
ATOM 17 N3 U A 258 82.355 107.354 5.453 1.00 45.27 N
ATOM 18 C4 U A 258 81.815 108.553 5.031 1.00 45.85 C
ATOM 19 O4 U A 258 82.482 109.587 5.137 1.00 45.84 O
ATOM 20 C5 U A 258 80.453 108.472 4.593 1.00 45.64 C
ATOM 21 C6 U A 258 79.804 107.301 4.648 1.00 46.09 C
ATOM 22 P C A 259 76.414 102.244 6.786 1.00 57.37 P
ATOM 23 OP1 C A 259 75.337 103.246 6.581 1.00 56.23 O
ATOM 24 OP2 C A 259 76.732 101.777 8.155 1.00 57.95 O
ATOM 25 O5' C A 259 76.050 100.962 5.917 1.00 60.31 O
TER
ATOM 1 O3' C B 227 77.105 112.977 4.599 1.00 46.93 O
ATOM 2 P C B 228 78.528 112.595 3.959 1.00 48.89 P
ATOM 3 OP1 C B 228 78.632 113.388 2.705 1.00 49.04 O
ATOM 4 OP2 C B 228 78.685 111.117 3.912 1.00 46.86 O
ATOM 5 O5' C B 228 79.580 113.158 5.015 1.00 47.81 O
ATOM 6 C5' C B 228 80.949 112.737 4.992 1.00 45.54 C
ATOM 7 C4' C B 228 81.587 112.999 6.329 1.00 45.81 C
ATOM 8 O4' C B 228 80.916 112.219 7.352 1.00 44.52 O
ATOM 9 C3' C B 228 83.046 112.596 6.444 1.00 47.02 C
ATOM 10 O3' C B 228 83.879 113.641 5.927 1.00 47.48 O
ATOM 11 C2' C B 228 83.214 112.427 7.952 1.00 47.70 C
ATOM 12 O2' C B 228 83.395 113.653 8.635 1.00 50.85 O
ATOM 13 C1' C B 228 81.849 111.859 8.362 1.00 46.80 C
ATOM 14 N1 C B 228 81.792 110.393 8.593 1.00 47.16 N
ATOM 15 C2 C B 228 82.780 109.766 9.406 1.00 47.39 C
ATOM 16 O2 C B 228 83.665 110.454 9.937 1.00 47.15 O
ATOM 17 N3 C B 228 82.730 108.423 9.588 1.00 47.07 N
ATOM 18 C4 C B 228 81.759 107.706 9.012 1.00 47.25 C
ATOM 19 N4 C B 228 81.764 106.388 9.197 1.00 45.77 N
ATOM 20 C5 C B 228 80.741 108.311 8.213 1.00 47.79 C
ATOM 21 C6 C B 228 80.797 109.641 8.029 1.00 47.92 C
ATOM 22 P A B 229 85.293 113.291 5.240 1.00 46.59 P
ATOM 23 OP1 A B 229 86.065 114.555 5.199 1.00 45.07 O
ATOM 24 OP2 A B 229 85.046 112.550 3.983 1.00 47.01 O
ATOM 25 O5' A B 229 86.000 112.306 6.270 1.00 44.30 O
TER
Atoms:
C4: (81.815,108.553,5.031)
N3: (82.355,107.354,5.453)
OP1: (77.098,103.084,-0.029)
OP2: (77.136,105.621,0.326)
C2: (81.724,106.137,5.514)
C1': (79.631,104.888,5.259)
C3': (77.780,103.479,4.916)
O5': (77.979,104.067,2.083)
O4': (80.024,103.982,4.254)
C5': (78.659,102.897,2.563)
P: (77.760,104.290,0.524)
C4': (78.949,103.020,4.041)
C2': (78.109,104.951,5.154)
O2': (77.536,105.464,6.341)
N1: (80.390,106.145,5.119)
O4: (82.482,109.587,5.137)
O2: (82.304,105.134,5.882)
C6: (79.804,107.301,4.648)
C5: (80.453,108.472,4.593)
O3': (77.794,102.777,6.156)
N3: (82.355,107.354,5.453)
OP1: (77.098,103.084,-0.029)
OP2: (77.136,105.621,0.326)
C2: (81.724,106.137,5.514)
C1': (79.631,104.888,5.259)
C3': (77.780,103.479,4.916)
O5': (77.979,104.067,2.083)
O4': (80.024,103.982,4.254)
C5': (78.659,102.897,2.563)
P: (77.760,104.290,0.524)
C4': (78.949,103.020,4.041)
C2': (78.109,104.951,5.154)
O2': (77.536,105.464,6.341)
N1: (80.390,106.145,5.119)
O4: (82.482,109.587,5.137)
O2: (82.304,105.134,5.882)
C6: (79.804,107.301,4.648)
C5: (80.453,108.472,4.593)
O3': (77.794,102.777,6.156)
C2: (82.780,109.766,9.406)
OP1: (78.632,113.388,2.705)
OP2: (78.685,111.117,3.912)
C4: (81.759,107.706,9.012)
O5': (79.580,113.158,5.015)
C3': (83.046,112.596,6.444)
C1': (81.849,111.859,8.362)
O4': (80.916,112.219,7.352)
C5': (80.949,112.737,4.992)
P: (78.528,112.595,3.959)
O2: (83.665,110.454,9.937)
C4': (81.587,112.999,6.329)
C2': (83.214,112.427,7.952)
O2': (83.395,113.653,8.635)
N1: (81.792,110.393,8.593)
N3: (82.730,108.423,9.588)
N4: (81.764,106.388,9.197)
C6: (80.797,109.641,8.029)
C5: (80.741,108.311,8.213)
O3': (83.879,113.641,5.927)
OP1: (78.632,113.388,2.705)
OP2: (78.685,111.117,3.912)
C4: (81.759,107.706,9.012)
O5': (79.580,113.158,5.015)
C3': (83.046,112.596,6.444)
C1': (81.849,111.859,8.362)
O4': (80.916,112.219,7.352)
C5': (80.949,112.737,4.992)
P: (78.528,112.595,3.959)
O2: (83.665,110.454,9.937)
C4': (81.587,112.999,6.329)
C2': (83.214,112.427,7.952)
O2': (83.395,113.653,8.635)
N1: (81.792,110.393,8.593)
N3: (82.730,108.423,9.588)
N4: (81.764,106.388,9.197)
C6: (80.797,109.641,8.029)
C5: (80.741,108.311,8.213)
O3': (83.879,113.641,5.927)
Image (generated by PyMOL):