Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2J01:A2008:A2103
Extra
PDB:
ATOM 1 O3' U A2007 -8.766 183.477 123.813 1.00 0.79 O
ATOM 2 P U A2008 -8.232 183.525 122.300 1.00 4.00 P
ATOM 3 OP1 U A2008 -7.581 182.228 121.979 1.00 26.78 O
ATOM 4 OP2 U A2008 -7.429 184.774 122.197 1.00 26.78 O
ATOM 5 O5' U A2008 -9.575 183.676 121.447 1.00 11.82 O
ATOM 6 C5' U A2008 -9.584 184.448 120.235 1.00 11.82 C
ATOM 7 C4' U A2008 -10.890 184.283 119.513 1.00 11.82 C
ATOM 8 O4' U A2008 -11.016 182.920 119.044 1.00 11.82 O
ATOM 9 C3' U A2008 -12.135 184.569 120.342 1.00 11.82 C
ATOM 10 O3' U A2008 -13.153 185.105 119.493 1.00 11.82 O
ATOM 11 C2' U A2008 -12.604 183.173 120.734 1.00 11.82 C
ATOM 12 O2' U A2008 -13.995 183.095 120.954 1.00 11.82 O
ATOM 13 C1' U A2008 -12.258 182.391 119.470 1.00 11.82 C
ATOM 14 N1 U A2008 -12.158 180.931 119.647 1.00 33.76 N
ATOM 15 C2 U A2008 -10.977 180.408 120.131 1.00 33.76 C
ATOM 16 O2 U A2008 -10.004 181.101 120.380 1.00 33.76 O
ATOM 17 N3 U A2008 -10.972 179.049 120.312 1.00 33.76 N
ATOM 18 C4 U A2008 -11.995 178.181 120.057 1.00 33.76 C
ATOM 19 O4 U A2008 -11.841 176.984 120.309 1.00 33.76 O
ATOM 20 C5 U A2008 -13.182 178.792 119.536 1.00 33.76 C
ATOM 21 C6 U A2008 -13.222 180.111 119.351 1.00 33.76 C
ATOM 22 P G A2009 -13.035 186.601 118.939 1.00 4.95 P
ATOM 23 OP1 G A2009 -12.584 187.511 120.033 1.00 25.51 O
ATOM 24 OP2 G A2009 -14.302 186.884 118.222 1.00 25.54 O
ATOM 25 O5' G A2009 -11.817 186.506 117.921 1.00 17.74 O
TER
ATOM 1 O3' A B2102 -14.412 176.644 115.577 1.00 11.02 O
ATOM 2 P C B2103 -14.239 176.348 117.156 1.00 48.93 P
ATOM 3 OP1 C B2103 -15.415 176.934 117.850 1.00 52.82 O
ATOM 4 OP2 C B2103 -12.873 176.674 117.614 1.00 53.04 O
ATOM 5 O5' C B2103 -14.371 174.769 117.256 1.00 17.00 O
ATOM 6 C5' C B2103 -15.101 174.040 116.253 1.00 17.00 C
ATOM 7 C4' C B2103 -14.411 172.730 115.926 1.00 17.00 C
ATOM 8 O4' C B2103 -13.151 172.952 115.231 1.00 17.00 O
ATOM 9 C3' C B2103 -14.033 171.839 117.092 1.00 17.00 C
ATOM 10 O3' C B2103 -15.139 171.115 117.598 1.00 17.00 O
ATOM 11 C2' C B2103 -12.971 170.942 116.479 1.00 17.00 C
ATOM 12 O2' C B2103 -13.567 169.951 115.677 1.00 17.00 O
ATOM 13 C1' C B2103 -12.239 171.920 115.564 1.00 17.00 C
ATOM 14 N1 C B2103 -11.096 172.530 116.253 1.00 20.44 N
ATOM 15 C2 C B2103 -9.889 171.853 116.275 1.00 20.48 C
ATOM 16 O2 C B2103 -9.803 170.770 115.693 1.00 20.54 O
ATOM 17 N3 C B2103 -8.844 172.386 116.935 1.00 20.46 N
ATOM 18 C4 C B2103 -8.980 173.550 117.561 1.00 20.45 C
ATOM 19 N4 C B2103 -7.937 174.024 118.235 1.00 20.50 N
ATOM 20 C5 C B2103 -10.193 174.274 117.536 1.00 20.40 C
ATOM 21 C6 C B2103 -11.217 173.735 116.877 1.00 20.33 C
ATOM 22 P A B2104 -15.085 170.580 119.109 1.00 0.79 P
ATOM 23 OP1 A B2104 -16.456 170.207 119.552 1.00 12.39 O
ATOM 24 OP2 A B2104 -14.316 171.568 119.884 1.00 12.27 O
ATOM 25 O5' A B2104 -14.166 169.292 118.977 1.00 4.46 O
TER
ATOM 2 P U A2008 -8.232 183.525 122.300 1.00 4.00 P
ATOM 3 OP1 U A2008 -7.581 182.228 121.979 1.00 26.78 O
ATOM 4 OP2 U A2008 -7.429 184.774 122.197 1.00 26.78 O
ATOM 5 O5' U A2008 -9.575 183.676 121.447 1.00 11.82 O
ATOM 6 C5' U A2008 -9.584 184.448 120.235 1.00 11.82 C
ATOM 7 C4' U A2008 -10.890 184.283 119.513 1.00 11.82 C
ATOM 8 O4' U A2008 -11.016 182.920 119.044 1.00 11.82 O
ATOM 9 C3' U A2008 -12.135 184.569 120.342 1.00 11.82 C
ATOM 10 O3' U A2008 -13.153 185.105 119.493 1.00 11.82 O
ATOM 11 C2' U A2008 -12.604 183.173 120.734 1.00 11.82 C
ATOM 12 O2' U A2008 -13.995 183.095 120.954 1.00 11.82 O
ATOM 13 C1' U A2008 -12.258 182.391 119.470 1.00 11.82 C
ATOM 14 N1 U A2008 -12.158 180.931 119.647 1.00 33.76 N
ATOM 15 C2 U A2008 -10.977 180.408 120.131 1.00 33.76 C
ATOM 16 O2 U A2008 -10.004 181.101 120.380 1.00 33.76 O
ATOM 17 N3 U A2008 -10.972 179.049 120.312 1.00 33.76 N
ATOM 18 C4 U A2008 -11.995 178.181 120.057 1.00 33.76 C
ATOM 19 O4 U A2008 -11.841 176.984 120.309 1.00 33.76 O
ATOM 20 C5 U A2008 -13.182 178.792 119.536 1.00 33.76 C
ATOM 21 C6 U A2008 -13.222 180.111 119.351 1.00 33.76 C
ATOM 22 P G A2009 -13.035 186.601 118.939 1.00 4.95 P
ATOM 23 OP1 G A2009 -12.584 187.511 120.033 1.00 25.51 O
ATOM 24 OP2 G A2009 -14.302 186.884 118.222 1.00 25.54 O
ATOM 25 O5' G A2009 -11.817 186.506 117.921 1.00 17.74 O
TER
ATOM 1 O3' A B2102 -14.412 176.644 115.577 1.00 11.02 O
ATOM 2 P C B2103 -14.239 176.348 117.156 1.00 48.93 P
ATOM 3 OP1 C B2103 -15.415 176.934 117.850 1.00 52.82 O
ATOM 4 OP2 C B2103 -12.873 176.674 117.614 1.00 53.04 O
ATOM 5 O5' C B2103 -14.371 174.769 117.256 1.00 17.00 O
ATOM 6 C5' C B2103 -15.101 174.040 116.253 1.00 17.00 C
ATOM 7 C4' C B2103 -14.411 172.730 115.926 1.00 17.00 C
ATOM 8 O4' C B2103 -13.151 172.952 115.231 1.00 17.00 O
ATOM 9 C3' C B2103 -14.033 171.839 117.092 1.00 17.00 C
ATOM 10 O3' C B2103 -15.139 171.115 117.598 1.00 17.00 O
ATOM 11 C2' C B2103 -12.971 170.942 116.479 1.00 17.00 C
ATOM 12 O2' C B2103 -13.567 169.951 115.677 1.00 17.00 O
ATOM 13 C1' C B2103 -12.239 171.920 115.564 1.00 17.00 C
ATOM 14 N1 C B2103 -11.096 172.530 116.253 1.00 20.44 N
ATOM 15 C2 C B2103 -9.889 171.853 116.275 1.00 20.48 C
ATOM 16 O2 C B2103 -9.803 170.770 115.693 1.00 20.54 O
ATOM 17 N3 C B2103 -8.844 172.386 116.935 1.00 20.46 N
ATOM 18 C4 C B2103 -8.980 173.550 117.561 1.00 20.45 C
ATOM 19 N4 C B2103 -7.937 174.024 118.235 1.00 20.50 N
ATOM 20 C5 C B2103 -10.193 174.274 117.536 1.00 20.40 C
ATOM 21 C6 C B2103 -11.217 173.735 116.877 1.00 20.33 C
ATOM 22 P A B2104 -15.085 170.580 119.109 1.00 0.79 P
ATOM 23 OP1 A B2104 -16.456 170.207 119.552 1.00 12.39 O
ATOM 24 OP2 A B2104 -14.316 171.568 119.884 1.00 12.27 O
ATOM 25 O5' A B2104 -14.166 169.292 118.977 1.00 4.46 O
TER
Atoms:
C4: (-11.995,178.181,120.057)
N3: (-10.972,179.049,120.312)
OP1: (-7.581,182.228,121.979)
OP2: (-7.429,184.774,122.197)
C2: (-10.977,180.408,120.131)
C1': (-12.258,182.391,119.470)
C3': (-12.135,184.569,120.342)
O5': (-9.575,183.676,121.447)
O4': (-11.016,182.920,119.044)
C5': (-9.584,184.448,120.235)
P: (-8.232,183.525,122.300)
C4': (-10.890,184.283,119.513)
C2': (-12.604,183.173,120.734)
O2': (-13.995,183.095,120.954)
N1: (-12.158,180.931,119.647)
O4: (-11.841,176.984,120.309)
O2: (-10.004,181.101,120.380)
C6: (-13.222,180.111,119.351)
C5: (-13.182,178.792,119.536)
O3': (-13.153,185.105,119.493)
N3: (-10.972,179.049,120.312)
OP1: (-7.581,182.228,121.979)
OP2: (-7.429,184.774,122.197)
C2: (-10.977,180.408,120.131)
C1': (-12.258,182.391,119.470)
C3': (-12.135,184.569,120.342)
O5': (-9.575,183.676,121.447)
O4': (-11.016,182.920,119.044)
C5': (-9.584,184.448,120.235)
P: (-8.232,183.525,122.300)
C4': (-10.890,184.283,119.513)
C2': (-12.604,183.173,120.734)
O2': (-13.995,183.095,120.954)
N1: (-12.158,180.931,119.647)
O4: (-11.841,176.984,120.309)
O2: (-10.004,181.101,120.380)
C6: (-13.222,180.111,119.351)
C5: (-13.182,178.792,119.536)
O3': (-13.153,185.105,119.493)
C2: (-9.889,171.853,116.275)
OP1: (-15.415,176.934,117.850)
OP2: (-12.873,176.674,117.614)
C4: (-8.980,173.550,117.561)
O5': (-14.371,174.769,117.256)
C3': (-14.033,171.839,117.092)
C1': (-12.239,171.920,115.564)
O4': (-13.151,172.952,115.231)
C5': (-15.101,174.040,116.253)
P: (-14.239,176.348,117.156)
O2: (-9.803,170.770,115.693)
C4': (-14.411,172.730,115.926)
C2': (-12.971,170.942,116.479)
O2': (-13.567,169.951,115.677)
N1: (-11.096,172.530,116.253)
N3: (-8.844,172.386,116.935)
N4: (-7.937,174.024,118.235)
C6: (-11.217,173.735,116.877)
C5: (-10.193,174.274,117.536)
O3': (-15.139,171.115,117.598)
OP1: (-15.415,176.934,117.850)
OP2: (-12.873,176.674,117.614)
C4: (-8.980,173.550,117.561)
O5': (-14.371,174.769,117.256)
C3': (-14.033,171.839,117.092)
C1': (-12.239,171.920,115.564)
O4': (-13.151,172.952,115.231)
C5': (-15.101,174.040,116.253)
P: (-14.239,176.348,117.156)
O2: (-9.803,170.770,115.693)
C4': (-14.411,172.730,115.926)
C2': (-12.971,170.942,116.479)
O2': (-13.567,169.951,115.677)
N1: (-11.096,172.530,116.253)
N3: (-8.844,172.386,116.935)
N4: (-7.937,174.024,118.235)
C6: (-11.217,173.735,116.877)
C5: (-10.193,174.274,117.536)
O3': (-15.139,171.115,117.598)
Image (generated by PyMOL):