Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2XS2:B5:B4
Extra
PDB:
ATOM 1 O3' C A 4 3.457 59.231 -3.960 1.00 15.92 O
ATOM 2 P U A 5 2.474 58.062 -4.350 1.00 17.11 P
ATOM 3 OP1 U A 5 1.990 57.512 -3.061 1.00 19.91 O
ATOM 4 OP2 U A 5 3.113 57.189 -5.370 1.00 17.04 O
ATOM 5 O5' U A 5 1.249 58.768 -5.112 1.00 17.49 O
ATOM 6 C5' U A 5 0.530 59.857 -4.509 1.00 16.47 C
ATOM 7 C4' U A 5 -0.195 60.652 -5.583 1.00 16.02 C
ATOM 8 O4' U A 5 0.715 60.962 -6.670 1.00 16.67 O
ATOM 9 C3' U A 5 -1.368 59.908 -6.204 1.00 17.83 C
ATOM 10 O3' U A 5 -2.445 60.801 -6.465 1.00 20.68 O
ATOM 11 C2' U A 5 -0.762 59.439 -7.533 1.00 18.00 C
ATOM 12 O2' U A 5 -1.700 59.180 -8.558 1.00 19.84 O
ATOM 13 C1' U A 5 0.198 60.556 -7.902 1.00 15.21 C
ATOM 14 N1 U A 5 1.231 60.039 -8.776 1.00 14.93 N
ATOM 15 C2 U A 5 1.185 60.397 -10.131 1.00 14.37 C
ATOM 16 O2 U A 5 0.348 61.160 -10.565 1.00 15.86 O
ATOM 17 N3 U A 5 2.157 59.833 -10.924 1.00 16.56 N
ATOM 18 C4 U A 5 3.154 58.954 -10.487 1.00 16.56 C
ATOM 19 O4 U A 5 3.940 58.517 -11.322 1.00 16.21 O
ATOM 20 C5 U A 5 3.166 58.620 -9.057 1.00 15.69 C
ATOM 21 C6 U A 5 2.204 59.182 -8.277 1.00 15.79 C
ATOM 22 P U A 6 -3.325 61.461 -5.327 1.00 23.78 P
ATOM 23 OP1 U A 6 -3.067 62.916 -5.386 1.00 24.81 O
ATOM 24 OP2 U A 6 -3.089 60.711 -4.043 1.00 25.68 O
ATOM 25 O5' U A 6 -4.812 61.148 -5.881 1.00 27.56 O
TER
ATOM 1 O3' U B 3 6.248 56.098 -6.245 1.00 14.50 O
ATOM 2 P C B 4 6.829 57.337 -7.124 1.00 15.81 P
ATOM 3 OP1 C B 4 6.251 57.194 -8.444 1.00 16.07 O
ATOM 4 OP2 C B 4 8.309 57.426 -6.937 1.00 19.01 O
ATOM 5 O5' C B 4 6.150 58.601 -6.475 1.00 14.43 O
ATOM 6 C5' C B 4 6.514 59.044 -5.166 1.00 13.97 C
ATOM 7 C4' C B 4 5.602 60.167 -4.731 1.00 14.37 C
ATOM 8 O4' C B 4 5.933 61.324 -5.544 1.00 16.44 O
ATOM 9 C3' C B 4 4.109 59.954 -4.987 1.00 15.90 C
ATOM 10 O3' C B 4 3.457 59.231 -3.960 1.00 15.92 O
ATOM 11 C2' C B 4 3.607 61.392 -5.028 1.00 16.63 C
ATOM 12 O2' C B 4 3.471 61.989 -3.724 1.00 19.73 O
ATOM 13 C1' C B 4 4.738 62.069 -5.756 1.00 17.01 C
ATOM 14 N1 C B 4 4.530 62.174 -7.253 1.00 15.28 N
ATOM 15 C2 C B 4 3.624 63.147 -7.700 1.00 15.85 C
ATOM 16 O2 C B 4 3.031 63.811 -6.858 1.00 17.16 O
ATOM 17 N3 C B 4 3.438 63.341 -9.046 1.00 13.62 N
ATOM 18 C4 C B 4 4.099 62.546 -9.919 1.00 14.53 C
ATOM 19 N4 C B 4 3.911 62.808 -11.231 1.00 16.32 N
ATOM 20 C5 C B 4 5.052 61.564 -9.493 1.00 17.13 C
ATOM 21 C6 C B 4 5.225 61.401 -8.162 1.00 16.76 C
ATOM 22 P U B 5 2.474 58.062 -4.350 1.00 17.11 P
ATOM 23 OP1 U B 5 1.990 57.512 -3.061 1.00 19.91 O
ATOM 24 OP2 U B 5 3.113 57.189 -5.370 1.00 17.04 O
ATOM 25 O5' U B 5 1.249 58.768 -5.112 1.00 17.49 O
TER
ATOM 2 P U A 5 2.474 58.062 -4.350 1.00 17.11 P
ATOM 3 OP1 U A 5 1.990 57.512 -3.061 1.00 19.91 O
ATOM 4 OP2 U A 5 3.113 57.189 -5.370 1.00 17.04 O
ATOM 5 O5' U A 5 1.249 58.768 -5.112 1.00 17.49 O
ATOM 6 C5' U A 5 0.530 59.857 -4.509 1.00 16.47 C
ATOM 7 C4' U A 5 -0.195 60.652 -5.583 1.00 16.02 C
ATOM 8 O4' U A 5 0.715 60.962 -6.670 1.00 16.67 O
ATOM 9 C3' U A 5 -1.368 59.908 -6.204 1.00 17.83 C
ATOM 10 O3' U A 5 -2.445 60.801 -6.465 1.00 20.68 O
ATOM 11 C2' U A 5 -0.762 59.439 -7.533 1.00 18.00 C
ATOM 12 O2' U A 5 -1.700 59.180 -8.558 1.00 19.84 O
ATOM 13 C1' U A 5 0.198 60.556 -7.902 1.00 15.21 C
ATOM 14 N1 U A 5 1.231 60.039 -8.776 1.00 14.93 N
ATOM 15 C2 U A 5 1.185 60.397 -10.131 1.00 14.37 C
ATOM 16 O2 U A 5 0.348 61.160 -10.565 1.00 15.86 O
ATOM 17 N3 U A 5 2.157 59.833 -10.924 1.00 16.56 N
ATOM 18 C4 U A 5 3.154 58.954 -10.487 1.00 16.56 C
ATOM 19 O4 U A 5 3.940 58.517 -11.322 1.00 16.21 O
ATOM 20 C5 U A 5 3.166 58.620 -9.057 1.00 15.69 C
ATOM 21 C6 U A 5 2.204 59.182 -8.277 1.00 15.79 C
ATOM 22 P U A 6 -3.325 61.461 -5.327 1.00 23.78 P
ATOM 23 OP1 U A 6 -3.067 62.916 -5.386 1.00 24.81 O
ATOM 24 OP2 U A 6 -3.089 60.711 -4.043 1.00 25.68 O
ATOM 25 O5' U A 6 -4.812 61.148 -5.881 1.00 27.56 O
TER
ATOM 1 O3' U B 3 6.248 56.098 -6.245 1.00 14.50 O
ATOM 2 P C B 4 6.829 57.337 -7.124 1.00 15.81 P
ATOM 3 OP1 C B 4 6.251 57.194 -8.444 1.00 16.07 O
ATOM 4 OP2 C B 4 8.309 57.426 -6.937 1.00 19.01 O
ATOM 5 O5' C B 4 6.150 58.601 -6.475 1.00 14.43 O
ATOM 6 C5' C B 4 6.514 59.044 -5.166 1.00 13.97 C
ATOM 7 C4' C B 4 5.602 60.167 -4.731 1.00 14.37 C
ATOM 8 O4' C B 4 5.933 61.324 -5.544 1.00 16.44 O
ATOM 9 C3' C B 4 4.109 59.954 -4.987 1.00 15.90 C
ATOM 10 O3' C B 4 3.457 59.231 -3.960 1.00 15.92 O
ATOM 11 C2' C B 4 3.607 61.392 -5.028 1.00 16.63 C
ATOM 12 O2' C B 4 3.471 61.989 -3.724 1.00 19.73 O
ATOM 13 C1' C B 4 4.738 62.069 -5.756 1.00 17.01 C
ATOM 14 N1 C B 4 4.530 62.174 -7.253 1.00 15.28 N
ATOM 15 C2 C B 4 3.624 63.147 -7.700 1.00 15.85 C
ATOM 16 O2 C B 4 3.031 63.811 -6.858 1.00 17.16 O
ATOM 17 N3 C B 4 3.438 63.341 -9.046 1.00 13.62 N
ATOM 18 C4 C B 4 4.099 62.546 -9.919 1.00 14.53 C
ATOM 19 N4 C B 4 3.911 62.808 -11.231 1.00 16.32 N
ATOM 20 C5 C B 4 5.052 61.564 -9.493 1.00 17.13 C
ATOM 21 C6 C B 4 5.225 61.401 -8.162 1.00 16.76 C
ATOM 22 P U B 5 2.474 58.062 -4.350 1.00 17.11 P
ATOM 23 OP1 U B 5 1.990 57.512 -3.061 1.00 19.91 O
ATOM 24 OP2 U B 5 3.113 57.189 -5.370 1.00 17.04 O
ATOM 25 O5' U B 5 1.249 58.768 -5.112 1.00 17.49 O
TER
Atoms:
C4: (3.154,58.954,-10.487)
N3: (2.157,59.833,-10.924)
OP1: (1.990,57.512,-3.061)
OP2: (3.113,57.189,-5.370)
C2: (1.185,60.397,-10.131)
C1': (0.198,60.556,-7.902)
C3': (-1.368,59.908,-6.204)
O5': (1.249,58.768,-5.112)
O4': (0.715,60.962,-6.670)
C5': (0.530,59.857,-4.509)
P: (2.474,58.062,-4.350)
C4': (-0.195,60.652,-5.583)
C2': (-0.762,59.439,-7.533)
O2': (-1.700,59.180,-8.558)
N1: (1.231,60.039,-8.776)
O4: (3.940,58.517,-11.322)
O2: (0.348,61.160,-10.565)
C6: (2.204,59.182,-8.277)
C5: (3.166,58.620,-9.057)
O3': (-2.445,60.801,-6.465)
N3: (2.157,59.833,-10.924)
OP1: (1.990,57.512,-3.061)
OP2: (3.113,57.189,-5.370)
C2: (1.185,60.397,-10.131)
C1': (0.198,60.556,-7.902)
C3': (-1.368,59.908,-6.204)
O5': (1.249,58.768,-5.112)
O4': (0.715,60.962,-6.670)
C5': (0.530,59.857,-4.509)
P: (2.474,58.062,-4.350)
C4': (-0.195,60.652,-5.583)
C2': (-0.762,59.439,-7.533)
O2': (-1.700,59.180,-8.558)
N1: (1.231,60.039,-8.776)
O4: (3.940,58.517,-11.322)
O2: (0.348,61.160,-10.565)
C6: (2.204,59.182,-8.277)
C5: (3.166,58.620,-9.057)
O3': (-2.445,60.801,-6.465)
C2: (3.624,63.147,-7.700)
OP1: (6.251,57.194,-8.444)
OP2: (8.309,57.426,-6.937)
C4: (4.099,62.546,-9.919)
O5': (6.150,58.601,-6.475)
C3': (4.109,59.954,-4.987)
C1': (4.738,62.069,-5.756)
O4': (5.933,61.324,-5.544)
C5': (6.514,59.044,-5.166)
P: (6.829,57.337,-7.124)
O2: (3.031,63.811,-6.858)
C4': (5.602,60.167,-4.731)
C2': (3.607,61.392,-5.028)
O2': (3.471,61.989,-3.724)
N1: (4.530,62.174,-7.253)
N3: (3.438,63.341,-9.046)
N4: (3.911,62.808,-11.231)
C6: (5.225,61.401,-8.162)
C5: (5.052,61.564,-9.493)
O3': (3.457,59.231,-3.960)
OP1: (6.251,57.194,-8.444)
OP2: (8.309,57.426,-6.937)
C4: (4.099,62.546,-9.919)
O5': (6.150,58.601,-6.475)
C3': (4.109,59.954,-4.987)
C1': (4.738,62.069,-5.756)
O4': (5.933,61.324,-5.544)
C5': (6.514,59.044,-5.166)
P: (6.829,57.337,-7.124)
O2: (3.031,63.811,-6.858)
C4': (5.602,60.167,-4.731)
C2': (3.607,61.392,-5.028)
O2': (3.471,61.989,-3.724)
N1: (4.530,62.174,-7.253)
N3: (3.438,63.341,-9.046)
N4: (3.911,62.808,-11.231)
C6: (5.225,61.401,-8.162)
C5: (5.052,61.564,-9.493)
O3': (3.457,59.231,-3.960)
Image (generated by PyMOL):