Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12241:12346
Extra
PDB:
ATOM 1 O3' U A2240 19.458 -36.722 132.353 1.00 57.70 O
ATOM 2 P U A2241 18.469 -36.811 133.587 1.00 65.14 P
ATOM 3 OP1 U A2241 17.508 -35.684 133.424 1.00 64.97 O
ATOM 4 OP2 U A2241 19.297 -36.874 134.820 1.00 65.61 O
ATOM 5 O5' U A2241 17.743 -38.205 133.349 1.00 65.29 O
ATOM 6 C5' U A2241 16.968 -38.809 134.367 1.00 65.84 C
ATOM 7 C4' U A2241 15.986 -39.802 133.799 1.00 65.82 C
ATOM 8 O4' U A2241 14.843 -39.090 133.251 1.00 65.56 O
ATOM 9 C3' U A2241 16.506 -40.684 132.658 1.00 65.48 C
ATOM 10 O3' U A2241 15.791 -41.926 132.661 1.00 65.74 O
ATOM 11 C2' U A2241 16.044 -39.900 131.442 1.00 64.91 C
ATOM 12 O2' U A2241 15.968 -40.644 130.260 1.00 64.58 O
ATOM 13 C1' U A2241 14.667 -39.475 131.903 1.00 65.10 C
ATOM 14 N1 U A2241 14.116 -38.354 131.160 1.00 64.68 N
ATOM 15 C2 U A2241 14.660 -37.109 131.459 1.00 64.57 C
ATOM 16 O2 U A2241 15.528 -36.896 132.302 1.00 64.81 O
ATOM 17 N3 U A2241 14.180 -36.050 130.749 1.00 64.18 N
ATOM 18 C4 U A2241 13.232 -36.087 129.816 1.00 63.90 C
ATOM 19 O4 U A2241 12.989 -34.982 129.368 1.00 63.60 O
ATOM 20 C5 U A2241 12.741 -37.417 129.543 1.00 64.03 C
ATOM 21 C6 U A2241 13.168 -38.510 130.196 1.00 64.41 C
ATOM 22 P G A2242 16.325 -43.216 133.446 1.00 66.81 P
ATOM 23 OP1 G A2242 17.823 -43.116 133.524 1.00 66.74 O
ATOM 24 OP2 G A2242 15.708 -44.402 132.783 1.00 66.81 O
ATOM 25 O5' G A2242 15.705 -43.021 134.887 1.00 67.39 O
TER
ATOM 1 O3' A B2345 8.723 -38.249 129.892 1.00 61.76 O
ATOM 2 P C B2346 9.222 -37.188 128.803 1.00 61.05 P
ATOM 3 OP1 C B2346 9.500 -37.949 127.581 1.00 60.69 O
ATOM 4 OP2 C B2346 10.283 -36.434 129.396 1.00 61.06 O
ATOM 5 O5' C B2346 7.988 -36.232 128.596 1.00 60.96 O
ATOM 6 C5' C B2346 6.967 -36.533 127.678 1.00 60.78 C
ATOM 7 C4' C B2346 6.147 -35.316 127.407 1.00 60.61 C
ATOM 8 O4' C B2346 5.857 -34.644 128.659 1.00 61.00 O
ATOM 9 C3' C B2346 6.833 -34.261 126.589 1.00 60.10 C
ATOM 10 O3' C B2346 6.780 -34.527 125.213 1.00 59.67 O
ATOM 11 C2' C B2346 6.104 -32.991 127.000 1.00 60.17 C
ATOM 12 O2' C B2346 4.833 -32.898 126.360 1.00 60.08 O
ATOM 13 C1' C B2346 5.884 -33.251 128.477 1.00 60.76 C
ATOM 14 N1 C B2346 6.971 -32.700 129.295 1.00 60.87 N
ATOM 15 C2 C B2346 6.974 -31.324 129.490 1.00 60.79 C
ATOM 16 O2 C B2346 6.082 -30.663 128.947 1.00 60.62 O
ATOM 17 N3 C B2346 7.936 -30.752 130.254 1.00 60.92 N
ATOM 18 C4 C B2346 8.876 -31.500 130.799 1.00 61.11 C
ATOM 19 N4 C B2346 9.785 -30.861 131.525 1.00 61.23 N
ATOM 20 C5 C B2346 8.906 -32.919 130.619 1.00 61.20 C
ATOM 21 C6 C B2346 7.937 -33.482 129.872 1.00 61.08 C
ATOM 22 P A B2347 7.774 -33.762 124.229 1.00 62.42 P
ATOM 23 OP1 A B2347 7.389 -34.124 122.845 1.00 62.05 O
ATOM 24 OP2 A B2347 9.145 -34.068 124.693 1.00 62.47 O
ATOM 25 O5' A B2347 7.433 -32.241 124.501 1.00 62.37 O
TER
ATOM 2 P U A2241 18.469 -36.811 133.587 1.00 65.14 P
ATOM 3 OP1 U A2241 17.508 -35.684 133.424 1.00 64.97 O
ATOM 4 OP2 U A2241 19.297 -36.874 134.820 1.00 65.61 O
ATOM 5 O5' U A2241 17.743 -38.205 133.349 1.00 65.29 O
ATOM 6 C5' U A2241 16.968 -38.809 134.367 1.00 65.84 C
ATOM 7 C4' U A2241 15.986 -39.802 133.799 1.00 65.82 C
ATOM 8 O4' U A2241 14.843 -39.090 133.251 1.00 65.56 O
ATOM 9 C3' U A2241 16.506 -40.684 132.658 1.00 65.48 C
ATOM 10 O3' U A2241 15.791 -41.926 132.661 1.00 65.74 O
ATOM 11 C2' U A2241 16.044 -39.900 131.442 1.00 64.91 C
ATOM 12 O2' U A2241 15.968 -40.644 130.260 1.00 64.58 O
ATOM 13 C1' U A2241 14.667 -39.475 131.903 1.00 65.10 C
ATOM 14 N1 U A2241 14.116 -38.354 131.160 1.00 64.68 N
ATOM 15 C2 U A2241 14.660 -37.109 131.459 1.00 64.57 C
ATOM 16 O2 U A2241 15.528 -36.896 132.302 1.00 64.81 O
ATOM 17 N3 U A2241 14.180 -36.050 130.749 1.00 64.18 N
ATOM 18 C4 U A2241 13.232 -36.087 129.816 1.00 63.90 C
ATOM 19 O4 U A2241 12.989 -34.982 129.368 1.00 63.60 O
ATOM 20 C5 U A2241 12.741 -37.417 129.543 1.00 64.03 C
ATOM 21 C6 U A2241 13.168 -38.510 130.196 1.00 64.41 C
ATOM 22 P G A2242 16.325 -43.216 133.446 1.00 66.81 P
ATOM 23 OP1 G A2242 17.823 -43.116 133.524 1.00 66.74 O
ATOM 24 OP2 G A2242 15.708 -44.402 132.783 1.00 66.81 O
ATOM 25 O5' G A2242 15.705 -43.021 134.887 1.00 67.39 O
TER
ATOM 1 O3' A B2345 8.723 -38.249 129.892 1.00 61.76 O
ATOM 2 P C B2346 9.222 -37.188 128.803 1.00 61.05 P
ATOM 3 OP1 C B2346 9.500 -37.949 127.581 1.00 60.69 O
ATOM 4 OP2 C B2346 10.283 -36.434 129.396 1.00 61.06 O
ATOM 5 O5' C B2346 7.988 -36.232 128.596 1.00 60.96 O
ATOM 6 C5' C B2346 6.967 -36.533 127.678 1.00 60.78 C
ATOM 7 C4' C B2346 6.147 -35.316 127.407 1.00 60.61 C
ATOM 8 O4' C B2346 5.857 -34.644 128.659 1.00 61.00 O
ATOM 9 C3' C B2346 6.833 -34.261 126.589 1.00 60.10 C
ATOM 10 O3' C B2346 6.780 -34.527 125.213 1.00 59.67 O
ATOM 11 C2' C B2346 6.104 -32.991 127.000 1.00 60.17 C
ATOM 12 O2' C B2346 4.833 -32.898 126.360 1.00 60.08 O
ATOM 13 C1' C B2346 5.884 -33.251 128.477 1.00 60.76 C
ATOM 14 N1 C B2346 6.971 -32.700 129.295 1.00 60.87 N
ATOM 15 C2 C B2346 6.974 -31.324 129.490 1.00 60.79 C
ATOM 16 O2 C B2346 6.082 -30.663 128.947 1.00 60.62 O
ATOM 17 N3 C B2346 7.936 -30.752 130.254 1.00 60.92 N
ATOM 18 C4 C B2346 8.876 -31.500 130.799 1.00 61.11 C
ATOM 19 N4 C B2346 9.785 -30.861 131.525 1.00 61.23 N
ATOM 20 C5 C B2346 8.906 -32.919 130.619 1.00 61.20 C
ATOM 21 C6 C B2346 7.937 -33.482 129.872 1.00 61.08 C
ATOM 22 P A B2347 7.774 -33.762 124.229 1.00 62.42 P
ATOM 23 OP1 A B2347 7.389 -34.124 122.845 1.00 62.05 O
ATOM 24 OP2 A B2347 9.145 -34.068 124.693 1.00 62.47 O
ATOM 25 O5' A B2347 7.433 -32.241 124.501 1.00 62.37 O
TER
Atoms:
C4: (13.232,-36.087,129.816)
N3: (14.180,-36.050,130.749)
OP1: (17.508,-35.684,133.424)
OP2: (19.297,-36.874,134.820)
C2: (14.660,-37.109,131.459)
C1': (14.667,-39.475,131.903)
C3': (16.506,-40.684,132.658)
O5': (17.743,-38.205,133.349)
O4': (14.843,-39.090,133.251)
C5': (16.968,-38.809,134.367)
P: (18.469,-36.811,133.587)
C4': (15.986,-39.802,133.799)
C2': (16.044,-39.900,131.442)
O2': (15.968,-40.644,130.260)
N1: (14.116,-38.354,131.160)
O4: (12.989,-34.982,129.368)
O2: (15.528,-36.896,132.302)
C6: (13.168,-38.510,130.196)
C5: (12.741,-37.417,129.543)
O3': (15.791,-41.926,132.661)
N3: (14.180,-36.050,130.749)
OP1: (17.508,-35.684,133.424)
OP2: (19.297,-36.874,134.820)
C2: (14.660,-37.109,131.459)
C1': (14.667,-39.475,131.903)
C3': (16.506,-40.684,132.658)
O5': (17.743,-38.205,133.349)
O4': (14.843,-39.090,133.251)
C5': (16.968,-38.809,134.367)
P: (18.469,-36.811,133.587)
C4': (15.986,-39.802,133.799)
C2': (16.044,-39.900,131.442)
O2': (15.968,-40.644,130.260)
N1: (14.116,-38.354,131.160)
O4: (12.989,-34.982,129.368)
O2: (15.528,-36.896,132.302)
C6: (13.168,-38.510,130.196)
C5: (12.741,-37.417,129.543)
O3': (15.791,-41.926,132.661)
C2: (6.974,-31.324,129.490)
OP1: (9.500,-37.949,127.581)
OP2: (10.283,-36.434,129.396)
C4: (8.876,-31.500,130.799)
O5': (7.988,-36.232,128.596)
C3': (6.833,-34.261,126.589)
C1': (5.884,-33.251,128.477)
O4': (5.857,-34.644,128.659)
C5': (6.967,-36.533,127.678)
P: (9.222,-37.188,128.803)
O2: (6.082,-30.663,128.947)
C4': (6.147,-35.316,127.407)
C2': (6.104,-32.991,127.000)
O2': (4.833,-32.898,126.360)
N1: (6.971,-32.700,129.295)
N3: (7.936,-30.752,130.254)
N4: (9.785,-30.861,131.525)
C6: (7.937,-33.482,129.872)
C5: (8.906,-32.919,130.619)
O3': (6.780,-34.527,125.213)
OP1: (9.500,-37.949,127.581)
OP2: (10.283,-36.434,129.396)
C4: (8.876,-31.500,130.799)
O5': (7.988,-36.232,128.596)
C3': (6.833,-34.261,126.589)
C1': (5.884,-33.251,128.477)
O4': (5.857,-34.644,128.659)
C5': (6.967,-36.533,127.678)
P: (9.222,-37.188,128.803)
O2: (6.082,-30.663,128.947)
C4': (6.147,-35.316,127.407)
C2': (6.104,-32.991,127.000)
O2': (4.833,-32.898,126.360)
N1: (6.971,-32.700,129.295)
N3: (7.936,-30.752,130.254)
N4: (9.785,-30.861,131.525)
C6: (7.937,-33.482,129.872)
C5: (8.906,-32.919,130.619)
O3': (6.780,-34.527,125.213)
Image (generated by PyMOL):