Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQN:0557:0577
Extra
PDB:
ATOM 1 O3' G A 556 0.375 93.440 112.669 1.00 55.01 O
ATOM 2 P A A 557 -0.065 92.191 113.584 1.00 57.26 P
ATOM 3 OP1 A A 557 0.529 92.412 114.927 1.00 58.21 O
ATOM 4 OP2 A A 557 0.184 90.907 112.874 1.00 53.81 O
ATOM 5 O5' A A 557 -1.640 92.378 113.697 1.00 58.73 O
ATOM 6 C5' A A 557 -2.257 92.726 114.945 1.00 58.59 C
ATOM 7 C4' A A 557 -2.176 94.211 115.172 1.00 57.03 C
ATOM 8 O4' A A 557 -2.676 94.916 114.010 1.00 56.80 O
ATOM 9 C3' A A 557 -3.047 94.702 116.306 1.00 58.32 C
ATOM 10 O3' A A 557 -2.440 94.504 117.569 1.00 59.08 O
ATOM 11 C2' A A 557 -3.285 96.157 115.933 1.00 58.41 C
ATOM 12 O2' A A 557 -2.208 97.019 116.237 1.00 59.41 O
ATOM 13 C1' A A 557 -3.451 96.032 114.419 1.00 56.69 C
ATOM 14 N9 A A 557 -4.841 95.757 114.056 1.00 56.80 N
ATOM 15 C8 A A 557 -5.329 94.670 113.362 1.00 56.82 C
ATOM 16 N7 A A 557 -6.629 94.684 113.209 1.00 57.63 N
ATOM 17 C5 A A 557 -7.026 95.858 113.838 1.00 55.76 C
ATOM 18 C6 A A 557 -8.282 96.443 114.024 1.00 55.68 C
ATOM 19 N6 A A 557 -9.415 95.909 113.567 1.00 56.24 N
ATOM 20 N1 A A 557 -8.337 97.615 114.699 1.00 57.54 N
ATOM 21 C2 A A 557 -7.192 98.154 115.144 1.00 54.88 C
ATOM 22 N3 A A 557 -5.950 97.698 115.026 1.00 55.18 N
ATOM 23 C4 A A 557 -5.936 96.532 114.357 1.00 55.17 C
ATOM 24 P C A 558 -3.351 94.077 118.820 1.00 60.86 P
ATOM 25 OP1 C A 558 -2.439 93.546 119.873 1.00 60.88 O
ATOM 26 OP2 C A 558 -4.466 93.223 118.320 1.00 59.48 O
ATOM 27 O5' C A 558 -3.950 95.466 119.318 1.00 59.55 O
TER
ATOM 1 O3' G B 576 -7.817 88.623 106.762 1.00 66.24 O
ATOM 2 P U B 577 -8.083 89.687 105.579 1.00 66.81 P
ATOM 3 OP1 U B 577 -8.588 88.974 104.371 1.00 66.46 O
ATOM 4 OP2 U B 577 -6.894 90.567 105.465 1.00 68.19 O
ATOM 5 O5' U B 577 -9.246 90.604 106.164 1.00 66.52 O
ATOM 6 C5' U B 577 -10.515 90.046 106.579 1.00 64.87 C
ATOM 7 C4' U B 577 -11.047 90.802 107.778 1.00 64.56 C
ATOM 8 O4' U B 577 -10.377 90.372 108.993 1.00 64.10 O
ATOM 9 C3' U B 577 -10.808 92.299 107.731 1.00 63.99 C
ATOM 10 O3' U B 577 -11.781 92.949 106.928 1.00 65.10 O
ATOM 11 C2' U B 577 -10.864 92.698 109.200 1.00 63.75 C
ATOM 12 O2' U B 577 -12.178 92.844 109.687 1.00 63.68 O
ATOM 13 C1' U B 577 -10.222 91.480 109.874 1.00 63.63 C
ATOM 14 N1 U B 577 -8.795 91.618 110.233 1.00 62.68 N
ATOM 15 C2 U B 577 -8.433 92.628 111.121 1.00 62.35 C
ATOM 16 O2 U B 577 -9.231 93.423 111.598 1.00 62.41 O
ATOM 17 N3 U B 577 -7.095 92.676 111.428 1.00 62.39 N
ATOM 18 C4 U B 577 -6.097 91.849 110.952 1.00 63.22 C
ATOM 19 O4 U B 577 -4.935 92.026 111.327 1.00 63.30 O
ATOM 20 C5 U B 577 -6.542 90.839 110.041 1.00 62.37 C
ATOM 21 C6 U B 577 -7.838 90.759 109.719 1.00 63.13 C
ATOM 22 P A B 578 -11.370 94.254 106.090 1.00 67.53 P
ATOM 23 OP1 A B 578 -12.540 94.711 105.292 1.00 69.26 O
ATOM 24 OP2 A B 578 -10.081 93.972 105.407 1.00 69.29 O
ATOM 25 O5' A B 578 -11.108 95.350 107.208 1.00 64.53 O
TER
ATOM 2 P A A 557 -0.065 92.191 113.584 1.00 57.26 P
ATOM 3 OP1 A A 557 0.529 92.412 114.927 1.00 58.21 O
ATOM 4 OP2 A A 557 0.184 90.907 112.874 1.00 53.81 O
ATOM 5 O5' A A 557 -1.640 92.378 113.697 1.00 58.73 O
ATOM 6 C5' A A 557 -2.257 92.726 114.945 1.00 58.59 C
ATOM 7 C4' A A 557 -2.176 94.211 115.172 1.00 57.03 C
ATOM 8 O4' A A 557 -2.676 94.916 114.010 1.00 56.80 O
ATOM 9 C3' A A 557 -3.047 94.702 116.306 1.00 58.32 C
ATOM 10 O3' A A 557 -2.440 94.504 117.569 1.00 59.08 O
ATOM 11 C2' A A 557 -3.285 96.157 115.933 1.00 58.41 C
ATOM 12 O2' A A 557 -2.208 97.019 116.237 1.00 59.41 O
ATOM 13 C1' A A 557 -3.451 96.032 114.419 1.00 56.69 C
ATOM 14 N9 A A 557 -4.841 95.757 114.056 1.00 56.80 N
ATOM 15 C8 A A 557 -5.329 94.670 113.362 1.00 56.82 C
ATOM 16 N7 A A 557 -6.629 94.684 113.209 1.00 57.63 N
ATOM 17 C5 A A 557 -7.026 95.858 113.838 1.00 55.76 C
ATOM 18 C6 A A 557 -8.282 96.443 114.024 1.00 55.68 C
ATOM 19 N6 A A 557 -9.415 95.909 113.567 1.00 56.24 N
ATOM 20 N1 A A 557 -8.337 97.615 114.699 1.00 57.54 N
ATOM 21 C2 A A 557 -7.192 98.154 115.144 1.00 54.88 C
ATOM 22 N3 A A 557 -5.950 97.698 115.026 1.00 55.18 N
ATOM 23 C4 A A 557 -5.936 96.532 114.357 1.00 55.17 C
ATOM 24 P C A 558 -3.351 94.077 118.820 1.00 60.86 P
ATOM 25 OP1 C A 558 -2.439 93.546 119.873 1.00 60.88 O
ATOM 26 OP2 C A 558 -4.466 93.223 118.320 1.00 59.48 O
ATOM 27 O5' C A 558 -3.950 95.466 119.318 1.00 59.55 O
TER
ATOM 1 O3' G B 576 -7.817 88.623 106.762 1.00 66.24 O
ATOM 2 P U B 577 -8.083 89.687 105.579 1.00 66.81 P
ATOM 3 OP1 U B 577 -8.588 88.974 104.371 1.00 66.46 O
ATOM 4 OP2 U B 577 -6.894 90.567 105.465 1.00 68.19 O
ATOM 5 O5' U B 577 -9.246 90.604 106.164 1.00 66.52 O
ATOM 6 C5' U B 577 -10.515 90.046 106.579 1.00 64.87 C
ATOM 7 C4' U B 577 -11.047 90.802 107.778 1.00 64.56 C
ATOM 8 O4' U B 577 -10.377 90.372 108.993 1.00 64.10 O
ATOM 9 C3' U B 577 -10.808 92.299 107.731 1.00 63.99 C
ATOM 10 O3' U B 577 -11.781 92.949 106.928 1.00 65.10 O
ATOM 11 C2' U B 577 -10.864 92.698 109.200 1.00 63.75 C
ATOM 12 O2' U B 577 -12.178 92.844 109.687 1.00 63.68 O
ATOM 13 C1' U B 577 -10.222 91.480 109.874 1.00 63.63 C
ATOM 14 N1 U B 577 -8.795 91.618 110.233 1.00 62.68 N
ATOM 15 C2 U B 577 -8.433 92.628 111.121 1.00 62.35 C
ATOM 16 O2 U B 577 -9.231 93.423 111.598 1.00 62.41 O
ATOM 17 N3 U B 577 -7.095 92.676 111.428 1.00 62.39 N
ATOM 18 C4 U B 577 -6.097 91.849 110.952 1.00 63.22 C
ATOM 19 O4 U B 577 -4.935 92.026 111.327 1.00 63.30 O
ATOM 20 C5 U B 577 -6.542 90.839 110.041 1.00 62.37 C
ATOM 21 C6 U B 577 -7.838 90.759 109.719 1.00 63.13 C
ATOM 22 P A B 578 -11.370 94.254 106.090 1.00 67.53 P
ATOM 23 OP1 A B 578 -12.540 94.711 105.292 1.00 69.26 O
ATOM 24 OP2 A B 578 -10.081 93.972 105.407 1.00 69.29 O
ATOM 25 O5' A B 578 -11.108 95.350 107.208 1.00 64.53 O
TER
Atoms:
OP1: (0.529,92.412,114.927)
OP2: (0.184,90.907,112.874)
C3': (-3.047,94.702,116.306)
C1': (-3.451,96.032,114.419)
C5': (-2.257,92.726,114.945)
O4': (-2.676,94.916,114.010)
C8: (-5.329,94.670,113.362)
O2': (-2.208,97.019,116.237)
C6: (-8.282,96.443,114.024)
C5: (-7.026,95.858,113.838)
C4: (-5.936,96.532,114.357)
P: (-0.065,92.191,113.584)
C4': (-2.176,94.211,115.172)
C2': (-3.285,96.157,115.933)
C2: (-7.192,98.154,115.144)
N1: (-8.337,97.615,114.699)
N3: (-5.950,97.698,115.026)
N6: (-9.415,95.909,113.567)
N7: (-6.629,94.684,113.209)
N9: (-4.841,95.757,114.056)
O5': (-1.640,92.378,113.697)
O3': (-2.440,94.504,117.569)
OP2: (0.184,90.907,112.874)
C3': (-3.047,94.702,116.306)
C1': (-3.451,96.032,114.419)
C5': (-2.257,92.726,114.945)
O4': (-2.676,94.916,114.010)
C8: (-5.329,94.670,113.362)
O2': (-2.208,97.019,116.237)
C6: (-8.282,96.443,114.024)
C5: (-7.026,95.858,113.838)
C4: (-5.936,96.532,114.357)
P: (-0.065,92.191,113.584)
C4': (-2.176,94.211,115.172)
C2': (-3.285,96.157,115.933)
C2: (-7.192,98.154,115.144)
N1: (-8.337,97.615,114.699)
N3: (-5.950,97.698,115.026)
N6: (-9.415,95.909,113.567)
N7: (-6.629,94.684,113.209)
N9: (-4.841,95.757,114.056)
O5': (-1.640,92.378,113.697)
O3': (-2.440,94.504,117.569)
C4: (-6.097,91.849,110.952)
N3: (-7.095,92.676,111.428)
OP1: (-8.588,88.974,104.371)
OP2: (-6.894,90.567,105.465)
C2: (-8.433,92.628,111.121)
C1': (-10.222,91.480,109.874)
C3': (-10.808,92.299,107.731)
O5': (-9.246,90.604,106.164)
O4': (-10.377,90.372,108.993)
C5': (-10.515,90.046,106.579)
P: (-8.083,89.687,105.579)
C4': (-11.047,90.802,107.778)
C2': (-10.864,92.698,109.200)
O2': (-12.178,92.844,109.687)
N1: (-8.795,91.618,110.233)
O4: (-4.935,92.026,111.327)
O2: (-9.231,93.423,111.598)
C6: (-7.838,90.759,109.719)
C5: (-6.542,90.839,110.041)
O3': (-11.781,92.949,106.928)
N3: (-7.095,92.676,111.428)
OP1: (-8.588,88.974,104.371)
OP2: (-6.894,90.567,105.465)
C2: (-8.433,92.628,111.121)
C1': (-10.222,91.480,109.874)
C3': (-10.808,92.299,107.731)
O5': (-9.246,90.604,106.164)
O4': (-10.377,90.372,108.993)
C5': (-10.515,90.046,106.579)
P: (-8.083,89.687,105.579)
C4': (-11.047,90.802,107.778)
C2': (-10.864,92.698,109.200)
O2': (-12.178,92.844,109.687)
N1: (-8.795,91.618,110.233)
O4: (-4.935,92.026,111.327)
O2: (-9.231,93.423,111.598)
C6: (-7.838,90.759,109.719)
C5: (-6.542,90.839,110.041)
O3': (-11.781,92.949,106.928)
Image (generated by PyMOL):