Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A281:A347
Extra
PDB:
ATOM 1 O3' G A 280 51.391 127.621 2.670 1.00 85.76 O
ATOM 2 P A A 281 51.229 128.371 4.078 1.00 87.33 P
ATOM 3 OP1 A A 281 49.968 129.166 4.093 1.00 86.85 O
ATOM 4 OP2 A A 281 52.534 129.051 4.333 1.00 86.27 O
ATOM 5 O5' A A 281 51.042 127.175 5.115 1.00 86.24 O
ATOM 6 C5' A A 281 49.795 126.988 5.808 1.00 85.15 C
ATOM 7 C4' A A 281 48.846 126.195 4.952 1.00 84.61 C
ATOM 8 O4' A A 281 49.562 125.061 4.399 1.00 84.19 O
ATOM 9 C3' A A 281 47.680 125.581 5.709 1.00 84.79 C
ATOM 10 O3' A A 281 46.588 126.470 5.912 1.00 84.99 O
ATOM 11 C2' A A 281 47.345 124.364 4.860 1.00 84.50 C
ATOM 12 O2' A A 281 46.603 124.673 3.697 1.00 84.37 O
ATOM 13 C1' A A 281 48.746 123.906 4.457 1.00 83.92 C
ATOM 14 N9 A A 281 49.346 122.977 5.415 1.00 83.26 N
ATOM 15 C8 A A 281 50.517 123.099 6.129 1.00 82.62 C
ATOM 16 N7 A A 281 50.797 122.049 6.863 1.00 82.11 N
ATOM 17 C5 A A 281 49.735 121.187 6.627 1.00 82.41 C
ATOM 18 C6 A A 281 49.441 119.896 7.086 1.00 82.57 C
ATOM 19 N6 A A 281 50.231 119.200 7.911 1.00 82.20 N
ATOM 20 N1 A A 281 48.293 119.326 6.656 1.00 82.67 N
ATOM 21 C2 A A 281 47.507 120.012 5.816 1.00 82.31 C
ATOM 22 N3 A A 281 47.679 121.222 5.309 1.00 82.01 N
ATOM 23 C4 A A 281 48.826 121.757 5.755 1.00 82.60 C
ATOM 24 P C A 282 45.672 126.303 7.222 1.00 84.61 P
ATOM 25 OP1 C A 282 44.827 127.520 7.348 1.00 84.71 O
ATOM 26 OP2 C A 282 46.571 125.910 8.346 1.00 85.07 O
ATOM 27 O5' C A 282 44.729 125.069 6.866 1.00 84.05 O
TER
ATOM 1 O3' G B 346 59.300 123.430 8.951 1.00 85.60 O
ATOM 2 P U B 347 60.110 122.335 8.069 1.00 86.23 P
ATOM 3 OP1 U B 347 61.488 122.116 8.607 1.00 85.08 O
ATOM 4 OP2 U B 347 59.929 122.693 6.635 1.00 86.32 O
ATOM 5 O5' U B 347 59.269 120.996 8.287 1.00 85.02 O
ATOM 6 C5' U B 347 59.364 120.236 9.512 1.00 83.79 C
ATOM 7 C4' U B 347 58.026 119.594 9.854 1.00 82.39 C
ATOM 8 O4' U B 347 57.073 120.613 10.239 1.00 81.57 O
ATOM 9 C3' U B 347 57.320 118.801 8.762 1.00 81.78 C
ATOM 10 O3' U B 347 57.858 117.479 8.680 1.00 82.83 O
ATOM 11 C2' U B 347 55.855 118.838 9.213 1.00 80.67 C
ATOM 12 O2' U B 347 55.481 117.919 10.222 1.00 80.58 O
ATOM 13 C1' U B 347 55.768 120.215 9.867 1.00 80.17 C
ATOM 14 N1 U B 347 55.171 121.270 9.039 1.00 79.46 N
ATOM 15 C2 U B 347 53.839 121.135 8.677 1.00 79.08 C
ATOM 16 O2 U B 347 53.159 120.175 8.993 1.00 79.45 O
ATOM 17 N3 U B 347 53.338 122.175 7.932 1.00 78.36 N
ATOM 18 C4 U B 347 54.019 123.307 7.522 1.00 77.73 C
ATOM 19 O4 U B 347 53.426 124.163 6.872 1.00 76.83 O
ATOM 20 C5 U B 347 55.391 123.364 7.924 1.00 77.97 C
ATOM 21 C6 U B 347 55.908 122.370 8.644 1.00 79.16 C
ATOM 22 P A B 348 57.879 116.697 7.270 1.00 83.63 P
ATOM 23 OP1 A B 348 58.447 115.351 7.571 1.00 83.22 O
ATOM 24 OP2 A B 348 58.495 117.527 6.200 1.00 82.86 O
ATOM 25 O5' A B 348 56.335 116.506 6.923 1.00 84.41 O
TER
ATOM 2 P A A 281 51.229 128.371 4.078 1.00 87.33 P
ATOM 3 OP1 A A 281 49.968 129.166 4.093 1.00 86.85 O
ATOM 4 OP2 A A 281 52.534 129.051 4.333 1.00 86.27 O
ATOM 5 O5' A A 281 51.042 127.175 5.115 1.00 86.24 O
ATOM 6 C5' A A 281 49.795 126.988 5.808 1.00 85.15 C
ATOM 7 C4' A A 281 48.846 126.195 4.952 1.00 84.61 C
ATOM 8 O4' A A 281 49.562 125.061 4.399 1.00 84.19 O
ATOM 9 C3' A A 281 47.680 125.581 5.709 1.00 84.79 C
ATOM 10 O3' A A 281 46.588 126.470 5.912 1.00 84.99 O
ATOM 11 C2' A A 281 47.345 124.364 4.860 1.00 84.50 C
ATOM 12 O2' A A 281 46.603 124.673 3.697 1.00 84.37 O
ATOM 13 C1' A A 281 48.746 123.906 4.457 1.00 83.92 C
ATOM 14 N9 A A 281 49.346 122.977 5.415 1.00 83.26 N
ATOM 15 C8 A A 281 50.517 123.099 6.129 1.00 82.62 C
ATOM 16 N7 A A 281 50.797 122.049 6.863 1.00 82.11 N
ATOM 17 C5 A A 281 49.735 121.187 6.627 1.00 82.41 C
ATOM 18 C6 A A 281 49.441 119.896 7.086 1.00 82.57 C
ATOM 19 N6 A A 281 50.231 119.200 7.911 1.00 82.20 N
ATOM 20 N1 A A 281 48.293 119.326 6.656 1.00 82.67 N
ATOM 21 C2 A A 281 47.507 120.012 5.816 1.00 82.31 C
ATOM 22 N3 A A 281 47.679 121.222 5.309 1.00 82.01 N
ATOM 23 C4 A A 281 48.826 121.757 5.755 1.00 82.60 C
ATOM 24 P C A 282 45.672 126.303 7.222 1.00 84.61 P
ATOM 25 OP1 C A 282 44.827 127.520 7.348 1.00 84.71 O
ATOM 26 OP2 C A 282 46.571 125.910 8.346 1.00 85.07 O
ATOM 27 O5' C A 282 44.729 125.069 6.866 1.00 84.05 O
TER
ATOM 1 O3' G B 346 59.300 123.430 8.951 1.00 85.60 O
ATOM 2 P U B 347 60.110 122.335 8.069 1.00 86.23 P
ATOM 3 OP1 U B 347 61.488 122.116 8.607 1.00 85.08 O
ATOM 4 OP2 U B 347 59.929 122.693 6.635 1.00 86.32 O
ATOM 5 O5' U B 347 59.269 120.996 8.287 1.00 85.02 O
ATOM 6 C5' U B 347 59.364 120.236 9.512 1.00 83.79 C
ATOM 7 C4' U B 347 58.026 119.594 9.854 1.00 82.39 C
ATOM 8 O4' U B 347 57.073 120.613 10.239 1.00 81.57 O
ATOM 9 C3' U B 347 57.320 118.801 8.762 1.00 81.78 C
ATOM 10 O3' U B 347 57.858 117.479 8.680 1.00 82.83 O
ATOM 11 C2' U B 347 55.855 118.838 9.213 1.00 80.67 C
ATOM 12 O2' U B 347 55.481 117.919 10.222 1.00 80.58 O
ATOM 13 C1' U B 347 55.768 120.215 9.867 1.00 80.17 C
ATOM 14 N1 U B 347 55.171 121.270 9.039 1.00 79.46 N
ATOM 15 C2 U B 347 53.839 121.135 8.677 1.00 79.08 C
ATOM 16 O2 U B 347 53.159 120.175 8.993 1.00 79.45 O
ATOM 17 N3 U B 347 53.338 122.175 7.932 1.00 78.36 N
ATOM 18 C4 U B 347 54.019 123.307 7.522 1.00 77.73 C
ATOM 19 O4 U B 347 53.426 124.163 6.872 1.00 76.83 O
ATOM 20 C5 U B 347 55.391 123.364 7.924 1.00 77.97 C
ATOM 21 C6 U B 347 55.908 122.370 8.644 1.00 79.16 C
ATOM 22 P A B 348 57.879 116.697 7.270 1.00 83.63 P
ATOM 23 OP1 A B 348 58.447 115.351 7.571 1.00 83.22 O
ATOM 24 OP2 A B 348 58.495 117.527 6.200 1.00 82.86 O
ATOM 25 O5' A B 348 56.335 116.506 6.923 1.00 84.41 O
TER
Atoms:
OP1: (49.968,129.166,4.093)
OP2: (52.534,129.051,4.333)
C3': (47.680,125.581,5.709)
C1': (48.746,123.906,4.457)
C5': (49.795,126.988,5.808)
O4': (49.562,125.061,4.399)
C8: (50.517,123.099,6.129)
O2': (46.603,124.673,3.697)
C6: (49.441,119.896,7.086)
C5: (49.735,121.187,6.627)
C4: (48.826,121.757,5.755)
P: (51.229,128.371,4.078)
C4': (48.846,126.195,4.952)
C2': (47.345,124.364,4.860)
C2: (47.507,120.012,5.816)
N1: (48.293,119.326,6.656)
N3: (47.679,121.222,5.309)
N6: (50.231,119.200,7.911)
N7: (50.797,122.049,6.863)
N9: (49.346,122.977,5.415)
O5': (51.042,127.175,5.115)
O3': (46.588,126.470,5.912)
OP2: (52.534,129.051,4.333)
C3': (47.680,125.581,5.709)
C1': (48.746,123.906,4.457)
C5': (49.795,126.988,5.808)
O4': (49.562,125.061,4.399)
C8: (50.517,123.099,6.129)
O2': (46.603,124.673,3.697)
C6: (49.441,119.896,7.086)
C5: (49.735,121.187,6.627)
C4: (48.826,121.757,5.755)
P: (51.229,128.371,4.078)
C4': (48.846,126.195,4.952)
C2': (47.345,124.364,4.860)
C2: (47.507,120.012,5.816)
N1: (48.293,119.326,6.656)
N3: (47.679,121.222,5.309)
N6: (50.231,119.200,7.911)
N7: (50.797,122.049,6.863)
N9: (49.346,122.977,5.415)
O5': (51.042,127.175,5.115)
O3': (46.588,126.470,5.912)
C4: (54.019,123.307,7.522)
N3: (53.338,122.175,7.932)
OP1: (61.488,122.116,8.607)
OP2: (59.929,122.693,6.635)
C2: (53.839,121.135,8.677)
C1': (55.768,120.215,9.867)
C3': (57.320,118.801,8.762)
O5': (59.269,120.996,8.287)
O4': (57.073,120.613,10.239)
C5': (59.364,120.236,9.512)
P: (60.110,122.335,8.069)
C4': (58.026,119.594,9.854)
C2': (55.855,118.838,9.213)
O2': (55.481,117.919,10.222)
N1: (55.171,121.270,9.039)
O4: (53.426,124.163,6.872)
O2: (53.159,120.175,8.993)
C6: (55.908,122.370,8.644)
C5: (55.391,123.364,7.924)
O3': (57.858,117.479,8.680)
N3: (53.338,122.175,7.932)
OP1: (61.488,122.116,8.607)
OP2: (59.929,122.693,6.635)
C2: (53.839,121.135,8.677)
C1': (55.768,120.215,9.867)
C3': (57.320,118.801,8.762)
O5': (59.269,120.996,8.287)
O4': (57.073,120.613,10.239)
C5': (59.364,120.236,9.512)
P: (60.110,122.335,8.069)
C4': (58.026,119.594,9.854)
C2': (55.855,118.838,9.213)
O2': (55.481,117.919,10.222)
N1: (55.171,121.270,9.039)
O4: (53.426,124.163,6.872)
O2: (53.159,120.175,8.993)
C6: (55.908,122.370,8.644)
C5: (55.391,123.364,7.924)
O3': (57.858,117.479,8.680)
Image (generated by PyMOL):