Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X28:X27
Extra
PDB:
ATOM 1 O3' G A 27 -0.956 -18.219 5.922 1.00 31.83 O
ATOM 2 P C A 28 -1.729 -18.390 4.537 1.00 31.32 P
ATOM 3 OP1 C A 28 -1.317 -19.682 3.948 1.00 31.09 O
ATOM 4 OP2 C A 28 -1.569 -17.143 3.755 1.00 32.49 O
ATOM 5 O5' C A 28 -3.253 -18.471 5.007 1.00 30.77 O
ATOM 6 C5' C A 28 -3.734 -19.579 5.763 1.00 32.30 C
ATOM 7 C4' C A 28 -5.249 -19.538 5.844 1.00 33.02 C
ATOM 8 O4' C A 28 -5.666 -18.401 6.644 1.00 33.47 O
ATOM 9 C3' C A 28 -5.945 -19.308 4.513 1.00 33.65 C
ATOM 10 O3' C A 28 -6.043 -20.527 3.778 1.00 33.89 O
ATOM 11 C2' C A 28 -7.296 -18.775 4.977 1.00 33.36 C
ATOM 12 O2' C A 28 -8.152 -19.799 5.455 1.00 34.49 O
ATOM 13 C1' C A 28 -6.874 -17.867 6.131 1.00 33.59 C
ATOM 14 N1 C A 28 -6.659 -16.418 5.776 1.00 33.52 N
ATOM 15 C2 C A 28 -7.746 -15.534 5.765 1.00 33.57 C
ATOM 16 O2 C A 28 -8.877 -15.961 6.033 1.00 33.85 O
ATOM 17 N3 C A 28 -7.533 -14.228 5.457 1.00 33.82 N
ATOM 18 C4 C A 28 -6.299 -13.800 5.176 1.00 33.38 C
ATOM 19 N4 C A 28 -6.138 -12.508 4.873 1.00 33.98 N
ATOM 20 C5 C A 28 -5.178 -14.683 5.183 1.00 33.80 C
ATOM 21 C6 C A 28 -5.401 -15.966 5.491 1.00 33.16 C
ATOM 22 P U A 29 -5.977 -20.490 2.178 1.00 35.02 P
ATOM 23 OP1 U A 29 -5.821 -21.884 1.700 1.00 34.96 O
ATOM 24 OP2 U A 29 -5.009 -19.448 1.767 1.00 33.16 O
ATOM 25 O5' U A 29 -7.432 -19.959 1.790 1.00 34.24 O
TER
ATOM 1 O3' G B 26 2.931 -13.439 6.092 1.00 31.75 O
ATOM 2 P G B 27 1.867 -13.918 4.998 1.00 32.59 P
ATOM 3 OP1 G B 27 2.607 -14.683 3.967 1.00 32.55 O
ATOM 4 OP2 G B 27 1.059 -12.742 4.613 1.00 31.58 O
ATOM 5 O5' G B 27 0.890 -14.900 5.809 1.00 31.60 O
ATOM 6 C5' G B 27 1.363 -16.092 6.428 1.00 31.44 C
ATOM 7 C4' G B 27 0.283 -16.695 7.314 1.00 31.12 C
ATOM 8 O4' G B 27 -0.091 -15.761 8.360 1.00 30.36 O
ATOM 9 C3' G B 27 -1.033 -16.987 6.609 1.00 31.05 C
ATOM 10 O3' G B 27 -0.956 -18.219 5.922 1.00 31.83 O
ATOM 11 C2' G B 27 -1.999 -17.041 7.785 1.00 31.04 C
ATOM 12 O2' G B 27 -1.917 -18.246 8.519 1.00 31.32 O
ATOM 13 C1' G B 27 -1.483 -15.867 8.612 1.00 29.96 C
ATOM 14 N9 G B 27 -2.143 -14.621 8.240 1.00 28.54 N
ATOM 15 C8 G B 27 -1.606 -13.541 7.582 1.00 28.22 C
ATOM 16 N7 G B 27 -2.463 -12.578 7.390 1.00 28.48 N
ATOM 17 C5 G B 27 -3.642 -13.046 7.955 1.00 28.38 C
ATOM 18 C6 G B 27 -4.921 -12.442 8.056 1.00 28.76 C
ATOM 19 O6 G B 27 -5.284 -11.327 7.657 1.00 28.59 O
ATOM 20 N1 G B 27 -5.832 -13.265 8.711 1.00 28.06 N
ATOM 21 C2 G B 27 -5.549 -14.519 9.196 1.00 28.32 C
ATOM 22 N2 G B 27 -6.558 -15.173 9.788 1.00 26.51 N
ATOM 23 N3 G B 27 -4.358 -15.095 9.110 1.00 28.19 N
ATOM 24 C4 G B 27 -3.459 -14.305 8.477 1.00 28.80 C
ATOM 25 P C B 28 -1.729 -18.390 4.537 1.00 31.32 P
ATOM 26 OP1 C B 28 -1.317 -19.682 3.948 1.00 31.09 O
ATOM 27 OP2 C B 28 -1.569 -17.143 3.755 1.00 32.49 O
ATOM 28 O5' C B 28 -3.253 -18.471 5.007 1.00 30.77 O
TER
ATOM 2 P C A 28 -1.729 -18.390 4.537 1.00 31.32 P
ATOM 3 OP1 C A 28 -1.317 -19.682 3.948 1.00 31.09 O
ATOM 4 OP2 C A 28 -1.569 -17.143 3.755 1.00 32.49 O
ATOM 5 O5' C A 28 -3.253 -18.471 5.007 1.00 30.77 O
ATOM 6 C5' C A 28 -3.734 -19.579 5.763 1.00 32.30 C
ATOM 7 C4' C A 28 -5.249 -19.538 5.844 1.00 33.02 C
ATOM 8 O4' C A 28 -5.666 -18.401 6.644 1.00 33.47 O
ATOM 9 C3' C A 28 -5.945 -19.308 4.513 1.00 33.65 C
ATOM 10 O3' C A 28 -6.043 -20.527 3.778 1.00 33.89 O
ATOM 11 C2' C A 28 -7.296 -18.775 4.977 1.00 33.36 C
ATOM 12 O2' C A 28 -8.152 -19.799 5.455 1.00 34.49 O
ATOM 13 C1' C A 28 -6.874 -17.867 6.131 1.00 33.59 C
ATOM 14 N1 C A 28 -6.659 -16.418 5.776 1.00 33.52 N
ATOM 15 C2 C A 28 -7.746 -15.534 5.765 1.00 33.57 C
ATOM 16 O2 C A 28 -8.877 -15.961 6.033 1.00 33.85 O
ATOM 17 N3 C A 28 -7.533 -14.228 5.457 1.00 33.82 N
ATOM 18 C4 C A 28 -6.299 -13.800 5.176 1.00 33.38 C
ATOM 19 N4 C A 28 -6.138 -12.508 4.873 1.00 33.98 N
ATOM 20 C5 C A 28 -5.178 -14.683 5.183 1.00 33.80 C
ATOM 21 C6 C A 28 -5.401 -15.966 5.491 1.00 33.16 C
ATOM 22 P U A 29 -5.977 -20.490 2.178 1.00 35.02 P
ATOM 23 OP1 U A 29 -5.821 -21.884 1.700 1.00 34.96 O
ATOM 24 OP2 U A 29 -5.009 -19.448 1.767 1.00 33.16 O
ATOM 25 O5' U A 29 -7.432 -19.959 1.790 1.00 34.24 O
TER
ATOM 1 O3' G B 26 2.931 -13.439 6.092 1.00 31.75 O
ATOM 2 P G B 27 1.867 -13.918 4.998 1.00 32.59 P
ATOM 3 OP1 G B 27 2.607 -14.683 3.967 1.00 32.55 O
ATOM 4 OP2 G B 27 1.059 -12.742 4.613 1.00 31.58 O
ATOM 5 O5' G B 27 0.890 -14.900 5.809 1.00 31.60 O
ATOM 6 C5' G B 27 1.363 -16.092 6.428 1.00 31.44 C
ATOM 7 C4' G B 27 0.283 -16.695 7.314 1.00 31.12 C
ATOM 8 O4' G B 27 -0.091 -15.761 8.360 1.00 30.36 O
ATOM 9 C3' G B 27 -1.033 -16.987 6.609 1.00 31.05 C
ATOM 10 O3' G B 27 -0.956 -18.219 5.922 1.00 31.83 O
ATOM 11 C2' G B 27 -1.999 -17.041 7.785 1.00 31.04 C
ATOM 12 O2' G B 27 -1.917 -18.246 8.519 1.00 31.32 O
ATOM 13 C1' G B 27 -1.483 -15.867 8.612 1.00 29.96 C
ATOM 14 N9 G B 27 -2.143 -14.621 8.240 1.00 28.54 N
ATOM 15 C8 G B 27 -1.606 -13.541 7.582 1.00 28.22 C
ATOM 16 N7 G B 27 -2.463 -12.578 7.390 1.00 28.48 N
ATOM 17 C5 G B 27 -3.642 -13.046 7.955 1.00 28.38 C
ATOM 18 C6 G B 27 -4.921 -12.442 8.056 1.00 28.76 C
ATOM 19 O6 G B 27 -5.284 -11.327 7.657 1.00 28.59 O
ATOM 20 N1 G B 27 -5.832 -13.265 8.711 1.00 28.06 N
ATOM 21 C2 G B 27 -5.549 -14.519 9.196 1.00 28.32 C
ATOM 22 N2 G B 27 -6.558 -15.173 9.788 1.00 26.51 N
ATOM 23 N3 G B 27 -4.358 -15.095 9.110 1.00 28.19 N
ATOM 24 C4 G B 27 -3.459 -14.305 8.477 1.00 28.80 C
ATOM 25 P C B 28 -1.729 -18.390 4.537 1.00 31.32 P
ATOM 26 OP1 C B 28 -1.317 -19.682 3.948 1.00 31.09 O
ATOM 27 OP2 C B 28 -1.569 -17.143 3.755 1.00 32.49 O
ATOM 28 O5' C B 28 -3.253 -18.471 5.007 1.00 30.77 O
TER
Atoms:
C2: (-7.746,-15.534,5.765)
OP1: (-1.317,-19.682,3.948)
OP2: (-1.569,-17.143,3.755)
C4: (-6.299,-13.800,5.176)
O5': (-3.253,-18.471,5.007)
C3': (-5.945,-19.308,4.513)
C1': (-6.874,-17.867,6.131)
O4': (-5.666,-18.401,6.644)
C5': (-3.734,-19.579,5.763)
P: (-1.729,-18.390,4.537)
O2: (-8.877,-15.961,6.033)
C4': (-5.249,-19.538,5.844)
C2': (-7.296,-18.775,4.977)
O2': (-8.152,-19.799,5.455)
N1: (-6.659,-16.418,5.776)
N3: (-7.533,-14.228,5.457)
N4: (-6.138,-12.508,4.873)
C6: (-5.401,-15.966,5.491)
C5: (-5.178,-14.683,5.183)
O3': (-6.043,-20.527,3.778)
OP1: (-1.317,-19.682,3.948)
OP2: (-1.569,-17.143,3.755)
C4: (-6.299,-13.800,5.176)
O5': (-3.253,-18.471,5.007)
C3': (-5.945,-19.308,4.513)
C1': (-6.874,-17.867,6.131)
O4': (-5.666,-18.401,6.644)
C5': (-3.734,-19.579,5.763)
P: (-1.729,-18.390,4.537)
O2: (-8.877,-15.961,6.033)
C4': (-5.249,-19.538,5.844)
C2': (-7.296,-18.775,4.977)
O2': (-8.152,-19.799,5.455)
N1: (-6.659,-16.418,5.776)
N3: (-7.533,-14.228,5.457)
N4: (-6.138,-12.508,4.873)
C6: (-5.401,-15.966,5.491)
C5: (-5.178,-14.683,5.183)
O3': (-6.043,-20.527,3.778)
OP1: (2.607,-14.683,3.967)
OP2: (1.059,-12.742,4.613)
C3': (-1.033,-16.987,6.609)
C1': (-1.483,-15.867,8.612)
C5': (1.363,-16.092,6.428)
O6: (-5.284,-11.327,7.657)
O4': (-0.091,-15.761,8.360)
C8: (-1.606,-13.541,7.582)
C2: (-5.549,-14.519,9.196)
C6: (-4.921,-12.442,8.056)
C5: (-3.642,-13.046,7.955)
C4: (-3.459,-14.305,8.477)
P: (1.867,-13.918,4.998)
C4': (0.283,-16.695,7.314)
C2': (-1.999,-17.041,7.785)
O2': (-1.917,-18.246,8.519)
N1: (-5.832,-13.265,8.711)
N2: (-6.558,-15.173,9.788)
N3: (-4.358,-15.095,9.110)
N7: (-2.463,-12.578,7.390)
N9: (-2.143,-14.621,8.240)
O5': (0.890,-14.900,5.809)
O3': (-0.956,-18.219,5.922)
OP2: (1.059,-12.742,4.613)
C3': (-1.033,-16.987,6.609)
C1': (-1.483,-15.867,8.612)
C5': (1.363,-16.092,6.428)
O6: (-5.284,-11.327,7.657)
O4': (-0.091,-15.761,8.360)
C8: (-1.606,-13.541,7.582)
C2: (-5.549,-14.519,9.196)
C6: (-4.921,-12.442,8.056)
C5: (-3.642,-13.046,7.955)
C4: (-3.459,-14.305,8.477)
P: (1.867,-13.918,4.998)
C4': (0.283,-16.695,7.314)
C2': (-1.999,-17.041,7.785)
O2': (-1.917,-18.246,8.519)
N1: (-5.832,-13.265,8.711)
N2: (-6.558,-15.173,9.788)
N3: (-4.358,-15.095,9.110)
N7: (-2.463,-12.578,7.390)
N9: (-2.143,-14.621,8.240)
O5': (0.890,-14.900,5.809)
O3': (-0.956,-18.219,5.922)
Image (generated by PyMOL):