Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0557:0577
Extra
PDB:
ATOM 1 O3' G A 556 0.371 94.531 112.303 1.00 53.94 O
ATOM 2 P A A 557 -0.139 93.320 113.236 1.00 54.75 P
ATOM 3 OP1 A A 557 0.589 93.476 114.520 1.00 54.24 O
ATOM 4 OP2 A A 557 -0.095 92.011 112.519 1.00 52.31 O
ATOM 5 O5' A A 557 -1.673 93.676 113.458 1.00 57.30 O
ATOM 6 C5' A A 557 -2.175 94.025 114.754 1.00 57.66 C
ATOM 7 C4' A A 557 -2.037 95.505 114.976 1.00 57.44 C
ATOM 8 O4' A A 557 -2.450 96.229 113.790 1.00 56.31 O
ATOM 9 C3' A A 557 -2.906 96.041 116.093 1.00 58.21 C
ATOM 10 O3' A A 557 -2.300 95.864 117.360 1.00 61.27 O
ATOM 11 C2' A A 557 -3.132 97.485 115.673 1.00 57.26 C
ATOM 12 O2' A A 557 -2.060 98.357 115.966 1.00 54.43 O
ATOM 13 C1' A A 557 -3.287 97.309 114.161 1.00 57.04 C
ATOM 14 N9 A A 557 -4.657 96.933 113.819 1.00 57.96 N
ATOM 15 C8 A A 557 -5.096 95.773 113.222 1.00 57.73 C
ATOM 16 N7 A A 557 -6.396 95.717 113.071 1.00 57.71 N
ATOM 17 C5 A A 557 -6.843 96.920 113.597 1.00 58.25 C
ATOM 18 C6 A A 557 -8.122 97.468 113.733 1.00 58.55 C
ATOM 19 N6 A A 557 -9.234 96.847 113.336 1.00 58.96 N
ATOM 20 N1 A A 557 -8.225 98.695 114.297 1.00 59.09 N
ATOM 21 C2 A A 557 -7.105 99.317 114.694 1.00 58.02 C
ATOM 22 N3 A A 557 -5.846 98.903 114.621 1.00 57.85 N
ATOM 23 C4 A A 557 -5.783 97.682 114.056 1.00 58.20 C
ATOM 24 P C A 558 -3.218 95.575 118.640 1.00 62.96 P
ATOM 25 OP1 C A 558 -2.323 95.220 119.771 1.00 62.71 O
ATOM 26 OP2 C A 558 -4.287 94.629 118.224 1.00 61.90 O
ATOM 27 O5' C A 558 -3.838 97.003 118.964 1.00 62.40 O
TER
ATOM 1 O3' G B 576 -7.748 89.924 106.595 1.00 72.68 O
ATOM 2 P U B 577 -8.294 90.801 105.363 1.00 73.32 P
ATOM 3 OP1 U B 577 -8.999 89.908 104.402 1.00 72.59 O
ATOM 4 OP2 U B 577 -7.183 91.661 104.887 1.00 72.90 O
ATOM 5 O5' U B 577 -9.362 91.762 106.054 1.00 71.36 O
ATOM 6 C5' U B 577 -10.626 91.259 106.547 1.00 67.49 C
ATOM 7 C4' U B 577 -11.089 92.085 107.726 1.00 64.49 C
ATOM 8 O4' U B 577 -10.387 91.679 108.923 1.00 63.23 O
ATOM 9 C3' U B 577 -10.813 93.573 107.609 1.00 64.03 C
ATOM 10 O3' U B 577 -11.805 94.231 106.831 1.00 63.77 O
ATOM 11 C2' U B 577 -10.774 94.034 109.062 1.00 64.18 C
ATOM 12 O2' U B 577 -12.036 94.355 109.610 1.00 64.88 O
ATOM 13 C1' U B 577 -10.181 92.804 109.762 1.00 63.06 C
ATOM 14 N1 U B 577 -8.747 92.896 110.082 1.00 62.95 N
ATOM 15 C2 U B 577 -8.352 93.815 111.050 1.00 62.96 C
ATOM 16 O2 U B 577 -9.135 94.540 111.643 1.00 62.57 O
ATOM 17 N3 U B 577 -7.002 93.851 111.296 1.00 62.23 N
ATOM 18 C4 U B 577 -6.026 93.084 110.700 1.00 62.97 C
ATOM 19 O4 U B 577 -4.849 93.244 111.027 1.00 63.62 O
ATOM 20 C5 U B 577 -6.508 92.156 109.719 1.00 62.66 C
ATOM 21 C6 U B 577 -7.816 92.097 109.449 1.00 62.69 C
ATOM 22 P A B 578 -11.430 95.574 106.042 1.00 64.77 P
ATOM 23 OP1 A B 578 -12.619 96.029 105.295 1.00 65.99 O
ATOM 24 OP2 A B 578 -10.163 95.336 105.310 1.00 67.00 O
ATOM 25 O5' A B 578 -11.155 96.616 107.209 1.00 62.21 O
TER
ATOM 2 P A A 557 -0.139 93.320 113.236 1.00 54.75 P
ATOM 3 OP1 A A 557 0.589 93.476 114.520 1.00 54.24 O
ATOM 4 OP2 A A 557 -0.095 92.011 112.519 1.00 52.31 O
ATOM 5 O5' A A 557 -1.673 93.676 113.458 1.00 57.30 O
ATOM 6 C5' A A 557 -2.175 94.025 114.754 1.00 57.66 C
ATOM 7 C4' A A 557 -2.037 95.505 114.976 1.00 57.44 C
ATOM 8 O4' A A 557 -2.450 96.229 113.790 1.00 56.31 O
ATOM 9 C3' A A 557 -2.906 96.041 116.093 1.00 58.21 C
ATOM 10 O3' A A 557 -2.300 95.864 117.360 1.00 61.27 O
ATOM 11 C2' A A 557 -3.132 97.485 115.673 1.00 57.26 C
ATOM 12 O2' A A 557 -2.060 98.357 115.966 1.00 54.43 O
ATOM 13 C1' A A 557 -3.287 97.309 114.161 1.00 57.04 C
ATOM 14 N9 A A 557 -4.657 96.933 113.819 1.00 57.96 N
ATOM 15 C8 A A 557 -5.096 95.773 113.222 1.00 57.73 C
ATOM 16 N7 A A 557 -6.396 95.717 113.071 1.00 57.71 N
ATOM 17 C5 A A 557 -6.843 96.920 113.597 1.00 58.25 C
ATOM 18 C6 A A 557 -8.122 97.468 113.733 1.00 58.55 C
ATOM 19 N6 A A 557 -9.234 96.847 113.336 1.00 58.96 N
ATOM 20 N1 A A 557 -8.225 98.695 114.297 1.00 59.09 N
ATOM 21 C2 A A 557 -7.105 99.317 114.694 1.00 58.02 C
ATOM 22 N3 A A 557 -5.846 98.903 114.621 1.00 57.85 N
ATOM 23 C4 A A 557 -5.783 97.682 114.056 1.00 58.20 C
ATOM 24 P C A 558 -3.218 95.575 118.640 1.00 62.96 P
ATOM 25 OP1 C A 558 -2.323 95.220 119.771 1.00 62.71 O
ATOM 26 OP2 C A 558 -4.287 94.629 118.224 1.00 61.90 O
ATOM 27 O5' C A 558 -3.838 97.003 118.964 1.00 62.40 O
TER
ATOM 1 O3' G B 576 -7.748 89.924 106.595 1.00 72.68 O
ATOM 2 P U B 577 -8.294 90.801 105.363 1.00 73.32 P
ATOM 3 OP1 U B 577 -8.999 89.908 104.402 1.00 72.59 O
ATOM 4 OP2 U B 577 -7.183 91.661 104.887 1.00 72.90 O
ATOM 5 O5' U B 577 -9.362 91.762 106.054 1.00 71.36 O
ATOM 6 C5' U B 577 -10.626 91.259 106.547 1.00 67.49 C
ATOM 7 C4' U B 577 -11.089 92.085 107.726 1.00 64.49 C
ATOM 8 O4' U B 577 -10.387 91.679 108.923 1.00 63.23 O
ATOM 9 C3' U B 577 -10.813 93.573 107.609 1.00 64.03 C
ATOM 10 O3' U B 577 -11.805 94.231 106.831 1.00 63.77 O
ATOM 11 C2' U B 577 -10.774 94.034 109.062 1.00 64.18 C
ATOM 12 O2' U B 577 -12.036 94.355 109.610 1.00 64.88 O
ATOM 13 C1' U B 577 -10.181 92.804 109.762 1.00 63.06 C
ATOM 14 N1 U B 577 -8.747 92.896 110.082 1.00 62.95 N
ATOM 15 C2 U B 577 -8.352 93.815 111.050 1.00 62.96 C
ATOM 16 O2 U B 577 -9.135 94.540 111.643 1.00 62.57 O
ATOM 17 N3 U B 577 -7.002 93.851 111.296 1.00 62.23 N
ATOM 18 C4 U B 577 -6.026 93.084 110.700 1.00 62.97 C
ATOM 19 O4 U B 577 -4.849 93.244 111.027 1.00 63.62 O
ATOM 20 C5 U B 577 -6.508 92.156 109.719 1.00 62.66 C
ATOM 21 C6 U B 577 -7.816 92.097 109.449 1.00 62.69 C
ATOM 22 P A B 578 -11.430 95.574 106.042 1.00 64.77 P
ATOM 23 OP1 A B 578 -12.619 96.029 105.295 1.00 65.99 O
ATOM 24 OP2 A B 578 -10.163 95.336 105.310 1.00 67.00 O
ATOM 25 O5' A B 578 -11.155 96.616 107.209 1.00 62.21 O
TER
Atoms:
OP1: (0.589,93.476,114.520)
OP2: (-0.095,92.011,112.519)
C3': (-2.906,96.041,116.093)
C1': (-3.287,97.309,114.161)
C5': (-2.175,94.025,114.754)
O4': (-2.450,96.229,113.790)
C8: (-5.096,95.773,113.222)
O2': (-2.060,98.357,115.966)
C6: (-8.122,97.468,113.733)
C5: (-6.843,96.920,113.597)
C4: (-5.783,97.682,114.056)
P: (-0.139,93.320,113.236)
C4': (-2.037,95.505,114.976)
C2': (-3.132,97.485,115.673)
C2: (-7.105,99.317,114.694)
N1: (-8.225,98.695,114.297)
N3: (-5.846,98.903,114.621)
N6: (-9.234,96.847,113.336)
N7: (-6.396,95.717,113.071)
N9: (-4.657,96.933,113.819)
O5': (-1.673,93.676,113.458)
O3': (-2.300,95.864,117.360)
OP2: (-0.095,92.011,112.519)
C3': (-2.906,96.041,116.093)
C1': (-3.287,97.309,114.161)
C5': (-2.175,94.025,114.754)
O4': (-2.450,96.229,113.790)
C8: (-5.096,95.773,113.222)
O2': (-2.060,98.357,115.966)
C6: (-8.122,97.468,113.733)
C5: (-6.843,96.920,113.597)
C4: (-5.783,97.682,114.056)
P: (-0.139,93.320,113.236)
C4': (-2.037,95.505,114.976)
C2': (-3.132,97.485,115.673)
C2: (-7.105,99.317,114.694)
N1: (-8.225,98.695,114.297)
N3: (-5.846,98.903,114.621)
N6: (-9.234,96.847,113.336)
N7: (-6.396,95.717,113.071)
N9: (-4.657,96.933,113.819)
O5': (-1.673,93.676,113.458)
O3': (-2.300,95.864,117.360)
C4: (-6.026,93.084,110.700)
N3: (-7.002,93.851,111.296)
OP1: (-8.999,89.908,104.402)
OP2: (-7.183,91.661,104.887)
C2: (-8.352,93.815,111.050)
C1': (-10.181,92.804,109.762)
C3': (-10.813,93.573,107.609)
O5': (-9.362,91.762,106.054)
O4': (-10.387,91.679,108.923)
C5': (-10.626,91.259,106.547)
P: (-8.294,90.801,105.363)
C4': (-11.089,92.085,107.726)
C2': (-10.774,94.034,109.062)
O2': (-12.036,94.355,109.610)
N1: (-8.747,92.896,110.082)
O4: (-4.849,93.244,111.027)
O2: (-9.135,94.540,111.643)
C6: (-7.816,92.097,109.449)
C5: (-6.508,92.156,109.719)
O3': (-11.805,94.231,106.831)
N3: (-7.002,93.851,111.296)
OP1: (-8.999,89.908,104.402)
OP2: (-7.183,91.661,104.887)
C2: (-8.352,93.815,111.050)
C1': (-10.181,92.804,109.762)
C3': (-10.813,93.573,107.609)
O5': (-9.362,91.762,106.054)
O4': (-10.387,91.679,108.923)
C5': (-10.626,91.259,106.547)
P: (-8.294,90.801,105.363)
C4': (-11.089,92.085,107.726)
C2': (-10.774,94.034,109.062)
O2': (-12.036,94.355,109.610)
N1: (-8.747,92.896,110.082)
O4: (-4.849,93.244,111.027)
O2: (-9.135,94.540,111.643)
C6: (-7.816,92.097,109.449)
C5: (-6.508,92.156,109.719)
O3': (-11.805,94.231,106.831)
Image (generated by PyMOL):