Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11492:11491
Extra
PDB:
ATOM 1 O3' G A1491 39.448 -16.038 122.854 1.00 50.45 O
ATOM 2 P C A1492 38.602 -14.725 123.170 1.00 47.04 P
ATOM 3 OP1 C A1492 39.055 -14.229 124.484 1.00 47.52 O
ATOM 4 OP2 C A1492 37.168 -15.083 122.993 1.00 46.95 O
ATOM 5 O5' C A1492 39.097 -13.744 121.999 1.00 46.62 O
ATOM 6 C5' C A1492 40.488 -13.711 121.665 1.00 46.55 C
ATOM 7 C4' C A1492 40.815 -12.773 120.541 1.00 46.16 C
ATOM 8 O4' C A1492 40.605 -13.423 119.274 1.00 45.72 O
ATOM 9 C3' C A1492 40.028 -11.487 120.489 1.00 46.11 C
ATOM 10 O3' C A1492 40.656 -10.487 121.274 1.00 46.41 O
ATOM 11 C2' C A1492 40.001 -11.157 119.002 1.00 45.61 C
ATOM 12 O2' C A1492 41.161 -10.440 118.651 1.00 45.53 O
ATOM 13 C1' C A1492 40.086 -12.528 118.341 1.00 45.39 C
ATOM 14 N1 C A1492 38.785 -13.052 117.918 1.00 45.22 N
ATOM 15 C2 C A1492 38.381 -13.061 116.618 1.00 44.79 C
ATOM 16 O2 C A1492 39.136 -12.535 115.820 1.00 44.55 O
ATOM 17 N3 C A1492 37.213 -13.633 116.253 1.00 44.66 N
ATOM 18 C4 C A1492 36.441 -14.203 117.166 1.00 44.95 C
ATOM 19 N4 C A1492 35.263 -14.757 116.851 1.00 44.84 N
ATOM 20 C5 C A1492 36.835 -14.202 118.513 1.00 45.39 C
ATOM 21 C6 C A1492 37.999 -13.662 118.832 1.00 45.51 C
ATOM 22 P U A1493 39.868 -9.176 121.789 1.00 52.65 P
ATOM 23 OP1 U A1493 40.767 -8.014 121.535 1.00 52.61 O
ATOM 24 OP2 U A1493 39.396 -9.444 123.190 1.00 53.13 O
ATOM 25 O5' U A1493 38.631 -9.104 120.815 1.00 52.27 O
TER
ATOM 1 O3' A B1490 37.571 -21.945 122.797 1.00 43.22 O
ATOM 2 P G B1491 36.795 -20.769 123.552 1.00 50.82 P
ATOM 3 OP1 G B1491 37.111 -20.875 124.999 1.00 51.36 O
ATOM 4 OP2 G B1491 35.391 -20.833 123.121 1.00 50.65 O
ATOM 5 O5' G B1491 37.457 -19.476 122.963 1.00 50.56 O
ATOM 6 C5' G B1491 38.731 -19.074 123.380 1.00 50.73 C
ATOM 7 C4' G B1491 39.453 -18.388 122.267 1.00 50.32 C
ATOM 8 O4' G B1491 39.261 -19.113 121.037 1.00 49.92 O
ATOM 9 C3' G B1491 38.986 -16.995 121.924 1.00 50.14 C
ATOM 10 O3' G B1491 39.448 -16.038 122.854 1.00 50.45 O
ATOM 11 C2' G B1491 39.571 -16.832 120.543 1.00 49.67 C
ATOM 12 O2' G B1491 40.959 -16.658 120.630 1.00 49.74 O
ATOM 13 C1' G B1491 39.324 -18.220 119.963 1.00 49.51 C
ATOM 14 N9 G B1491 38.060 -18.292 119.225 1.00 49.24 N
ATOM 15 C8 G B1491 36.848 -18.746 119.665 1.00 49.38 C
ATOM 16 N7 G B1491 35.927 -18.650 118.736 1.00 49.05 N
ATOM 17 C5 G B1491 36.574 -18.106 117.636 1.00 48.68 C
ATOM 18 C6 G B1491 36.107 -17.770 116.354 1.00 48.25 C
ATOM 19 O6 G B1491 34.970 -17.901 115.861 1.00 48.09 O
ATOM 20 N1 G B1491 37.128 -17.241 115.579 1.00 48.01 N
ATOM 21 C2 G B1491 38.416 -17.049 115.947 1.00 48.14 C
ATOM 22 N2 G B1491 39.221 -16.514 115.021 1.00 47.85 N
ATOM 23 N3 G B1491 38.869 -17.354 117.138 1.00 48.54 N
ATOM 24 C4 G B1491 37.896 -17.875 117.922 1.00 48.79 C
ATOM 25 P C B1492 38.602 -14.725 123.170 1.00 47.04 P
ATOM 26 OP1 C B1492 39.055 -14.229 124.484 1.00 47.52 O
ATOM 27 OP2 C B1492 37.168 -15.083 122.993 1.00 46.95 O
ATOM 28 O5' C B1492 39.097 -13.744 121.999 1.00 46.62 O
TER
ATOM 2 P C A1492 38.602 -14.725 123.170 1.00 47.04 P
ATOM 3 OP1 C A1492 39.055 -14.229 124.484 1.00 47.52 O
ATOM 4 OP2 C A1492 37.168 -15.083 122.993 1.00 46.95 O
ATOM 5 O5' C A1492 39.097 -13.744 121.999 1.00 46.62 O
ATOM 6 C5' C A1492 40.488 -13.711 121.665 1.00 46.55 C
ATOM 7 C4' C A1492 40.815 -12.773 120.541 1.00 46.16 C
ATOM 8 O4' C A1492 40.605 -13.423 119.274 1.00 45.72 O
ATOM 9 C3' C A1492 40.028 -11.487 120.489 1.00 46.11 C
ATOM 10 O3' C A1492 40.656 -10.487 121.274 1.00 46.41 O
ATOM 11 C2' C A1492 40.001 -11.157 119.002 1.00 45.61 C
ATOM 12 O2' C A1492 41.161 -10.440 118.651 1.00 45.53 O
ATOM 13 C1' C A1492 40.086 -12.528 118.341 1.00 45.39 C
ATOM 14 N1 C A1492 38.785 -13.052 117.918 1.00 45.22 N
ATOM 15 C2 C A1492 38.381 -13.061 116.618 1.00 44.79 C
ATOM 16 O2 C A1492 39.136 -12.535 115.820 1.00 44.55 O
ATOM 17 N3 C A1492 37.213 -13.633 116.253 1.00 44.66 N
ATOM 18 C4 C A1492 36.441 -14.203 117.166 1.00 44.95 C
ATOM 19 N4 C A1492 35.263 -14.757 116.851 1.00 44.84 N
ATOM 20 C5 C A1492 36.835 -14.202 118.513 1.00 45.39 C
ATOM 21 C6 C A1492 37.999 -13.662 118.832 1.00 45.51 C
ATOM 22 P U A1493 39.868 -9.176 121.789 1.00 52.65 P
ATOM 23 OP1 U A1493 40.767 -8.014 121.535 1.00 52.61 O
ATOM 24 OP2 U A1493 39.396 -9.444 123.190 1.00 53.13 O
ATOM 25 O5' U A1493 38.631 -9.104 120.815 1.00 52.27 O
TER
ATOM 1 O3' A B1490 37.571 -21.945 122.797 1.00 43.22 O
ATOM 2 P G B1491 36.795 -20.769 123.552 1.00 50.82 P
ATOM 3 OP1 G B1491 37.111 -20.875 124.999 1.00 51.36 O
ATOM 4 OP2 G B1491 35.391 -20.833 123.121 1.00 50.65 O
ATOM 5 O5' G B1491 37.457 -19.476 122.963 1.00 50.56 O
ATOM 6 C5' G B1491 38.731 -19.074 123.380 1.00 50.73 C
ATOM 7 C4' G B1491 39.453 -18.388 122.267 1.00 50.32 C
ATOM 8 O4' G B1491 39.261 -19.113 121.037 1.00 49.92 O
ATOM 9 C3' G B1491 38.986 -16.995 121.924 1.00 50.14 C
ATOM 10 O3' G B1491 39.448 -16.038 122.854 1.00 50.45 O
ATOM 11 C2' G B1491 39.571 -16.832 120.543 1.00 49.67 C
ATOM 12 O2' G B1491 40.959 -16.658 120.630 1.00 49.74 O
ATOM 13 C1' G B1491 39.324 -18.220 119.963 1.00 49.51 C
ATOM 14 N9 G B1491 38.060 -18.292 119.225 1.00 49.24 N
ATOM 15 C8 G B1491 36.848 -18.746 119.665 1.00 49.38 C
ATOM 16 N7 G B1491 35.927 -18.650 118.736 1.00 49.05 N
ATOM 17 C5 G B1491 36.574 -18.106 117.636 1.00 48.68 C
ATOM 18 C6 G B1491 36.107 -17.770 116.354 1.00 48.25 C
ATOM 19 O6 G B1491 34.970 -17.901 115.861 1.00 48.09 O
ATOM 20 N1 G B1491 37.128 -17.241 115.579 1.00 48.01 N
ATOM 21 C2 G B1491 38.416 -17.049 115.947 1.00 48.14 C
ATOM 22 N2 G B1491 39.221 -16.514 115.021 1.00 47.85 N
ATOM 23 N3 G B1491 38.869 -17.354 117.138 1.00 48.54 N
ATOM 24 C4 G B1491 37.896 -17.875 117.922 1.00 48.79 C
ATOM 25 P C B1492 38.602 -14.725 123.170 1.00 47.04 P
ATOM 26 OP1 C B1492 39.055 -14.229 124.484 1.00 47.52 O
ATOM 27 OP2 C B1492 37.168 -15.083 122.993 1.00 46.95 O
ATOM 28 O5' C B1492 39.097 -13.744 121.999 1.00 46.62 O
TER
Atoms:
C2: (38.381,-13.061,116.618)
OP1: (39.055,-14.229,124.484)
OP2: (37.168,-15.083,122.993)
C4: (36.441,-14.203,117.166)
O5': (39.097,-13.744,121.999)
C3': (40.028,-11.487,120.489)
C1': (40.086,-12.528,118.341)
O4': (40.605,-13.423,119.274)
C5': (40.488,-13.711,121.665)
P: (38.602,-14.725,123.170)
O2: (39.136,-12.535,115.820)
C4': (40.815,-12.773,120.541)
C2': (40.001,-11.157,119.002)
O2': (41.161,-10.440,118.651)
N1: (38.785,-13.052,117.918)
N3: (37.213,-13.633,116.253)
N4: (35.263,-14.757,116.851)
C6: (37.999,-13.662,118.832)
C5: (36.835,-14.202,118.513)
O3': (40.656,-10.487,121.274)
OP1: (39.055,-14.229,124.484)
OP2: (37.168,-15.083,122.993)
C4: (36.441,-14.203,117.166)
O5': (39.097,-13.744,121.999)
C3': (40.028,-11.487,120.489)
C1': (40.086,-12.528,118.341)
O4': (40.605,-13.423,119.274)
C5': (40.488,-13.711,121.665)
P: (38.602,-14.725,123.170)
O2: (39.136,-12.535,115.820)
C4': (40.815,-12.773,120.541)
C2': (40.001,-11.157,119.002)
O2': (41.161,-10.440,118.651)
N1: (38.785,-13.052,117.918)
N3: (37.213,-13.633,116.253)
N4: (35.263,-14.757,116.851)
C6: (37.999,-13.662,118.832)
C5: (36.835,-14.202,118.513)
O3': (40.656,-10.487,121.274)
OP1: (37.111,-20.875,124.999)
OP2: (35.391,-20.833,123.121)
C3': (38.986,-16.995,121.924)
C1': (39.324,-18.220,119.963)
C5': (38.731,-19.074,123.380)
O6: (34.970,-17.901,115.861)
O4': (39.261,-19.113,121.037)
C8: (36.848,-18.746,119.665)
C2: (38.416,-17.049,115.947)
C6: (36.107,-17.770,116.354)
C5: (36.574,-18.106,117.636)
C4: (37.896,-17.875,117.922)
P: (36.795,-20.769,123.552)
C4': (39.453,-18.388,122.267)
C2': (39.571,-16.832,120.543)
O2': (40.959,-16.658,120.630)
N1: (37.128,-17.241,115.579)
N2: (39.221,-16.514,115.021)
N3: (38.869,-17.354,117.138)
N7: (35.927,-18.650,118.736)
N9: (38.060,-18.292,119.225)
O5': (37.457,-19.476,122.963)
O3': (39.448,-16.038,122.854)
OP2: (35.391,-20.833,123.121)
C3': (38.986,-16.995,121.924)
C1': (39.324,-18.220,119.963)
C5': (38.731,-19.074,123.380)
O6: (34.970,-17.901,115.861)
O4': (39.261,-19.113,121.037)
C8: (36.848,-18.746,119.665)
C2: (38.416,-17.049,115.947)
C6: (36.107,-17.770,116.354)
C5: (36.574,-18.106,117.636)
C4: (37.896,-17.875,117.922)
P: (36.795,-20.769,123.552)
C4': (39.453,-18.388,122.267)
C2': (39.571,-16.832,120.543)
O2': (40.959,-16.658,120.630)
N1: (37.128,-17.241,115.579)
N2: (39.221,-16.514,115.021)
N3: (38.869,-17.354,117.138)
N7: (35.927,-18.650,118.736)
N9: (38.060,-18.292,119.225)
O5': (37.457,-19.476,122.963)
O3': (39.448,-16.038,122.854)
Image (generated by PyMOL):