Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0264:0263
Extra
PDB:
ATOM 1 O3' G A 263 85.926 104.137 -5.725 1.00 59.33 O
ATOM 2 P C A 264 85.709 103.867 -7.295 1.00 60.93 P
ATOM 3 OP1 C A 264 85.913 105.161 -8.005 1.00 60.53 O
ATOM 4 OP2 C A 264 84.431 103.127 -7.470 1.00 60.03 O
ATOM 5 O5' C A 264 86.916 102.900 -7.674 1.00 59.87 O
ATOM 6 C5' C A 264 88.283 103.345 -7.557 1.00 60.83 C
ATOM 7 C4' C A 264 89.228 102.215 -7.888 1.00 63.27 C
ATOM 8 O4' C A 264 89.132 101.184 -6.870 1.00 62.40 O
ATOM 9 C3' C A 264 88.929 101.491 -9.191 1.00 64.57 C
ATOM 10 O3' C A 264 89.450 102.184 -10.325 1.00 68.85 O
ATOM 11 C2' C A 264 89.558 100.124 -8.953 1.00 63.01 C
ATOM 12 O2' C A 264 90.965 100.116 -9.115 1.00 62.70 O
ATOM 13 C1' C A 264 89.220 99.902 -7.476 1.00 61.77 C
ATOM 14 N1 C A 264 87.933 99.206 -7.265 1.00 59.36 N
ATOM 15 C2 C A 264 87.909 97.799 -7.230 1.00 58.01 C
ATOM 16 O2 C A 264 88.968 97.165 -7.389 1.00 55.67 O
ATOM 17 N3 C A 264 86.729 97.170 -7.025 1.00 58.09 N
ATOM 18 C4 C A 264 85.609 97.884 -6.862 1.00 58.34 C
ATOM 19 N4 C A 264 84.466 97.223 -6.653 1.00 58.46 N
ATOM 20 C5 C A 264 85.608 99.305 -6.902 1.00 57.85 C
ATOM 21 C6 C A 264 86.776 99.918 -7.103 1.00 58.66 C
ATOM 22 P U A 265 88.636 102.165 -11.715 1.00 72.21 P
ATOM 23 OP1 U A 265 89.340 103.095 -12.638 1.00 72.01 O
ATOM 24 OP2 U A 265 87.189 102.367 -11.449 1.00 70.77 O
ATOM 25 O5' U A 265 88.842 100.670 -12.236 1.00 73.97 O
TER
ATOM 1 O3' G B 262 81.140 102.424 -2.259 1.00 56.66 O
ATOM 2 P G B 263 81.543 102.200 -3.798 1.00 56.15 P
ATOM 3 OP1 G B 263 80.904 103.294 -4.578 1.00 53.50 O
ATOM 4 OP2 G B 263 81.257 100.778 -4.148 1.00 55.46 O
ATOM 5 O5' G B 263 83.124 102.391 -3.810 1.00 53.91 O
ATOM 6 C5' G B 263 83.717 103.644 -3.451 1.00 53.49 C
ATOM 7 C4' G B 263 85.215 103.526 -3.481 1.00 55.21 C
ATOM 8 O4' G B 263 85.625 102.501 -2.540 1.00 55.56 O
ATOM 9 C3' G B 263 85.798 103.061 -4.802 1.00 57.05 C
ATOM 10 O3' G B 263 85.926 104.137 -5.725 1.00 59.33 O
ATOM 11 C2' G B 263 87.132 102.464 -4.369 1.00 56.82 C
ATOM 12 O2' G B 263 88.119 103.437 -4.089 1.00 53.83 O
ATOM 13 C1' G B 263 86.731 101.781 -3.062 1.00 56.20 C
ATOM 14 N9 G B 263 86.319 100.389 -3.237 1.00 57.49 N
ATOM 15 C8 G B 263 85.035 99.892 -3.175 1.00 57.08 C
ATOM 16 N7 G B 263 84.976 98.599 -3.350 1.00 57.26 N
ATOM 17 C5 G B 263 86.299 98.219 -3.543 1.00 57.43 C
ATOM 18 C6 G B 263 86.863 96.933 -3.779 1.00 57.46 C
ATOM 19 O6 G B 263 86.290 95.837 -3.852 1.00 57.70 O
ATOM 20 N1 G B 263 88.242 97.004 -3.933 1.00 57.06 N
ATOM 21 C2 G B 263 88.987 98.153 -3.867 1.00 56.96 C
ATOM 22 N2 G B 263 90.306 98.006 -4.059 1.00 56.38 N
ATOM 23 N3 G B 263 88.478 99.355 -3.635 1.00 56.14 N
ATOM 24 C4 G B 263 87.139 99.313 -3.485 1.00 56.46 C
ATOM 25 P C B 264 85.709 103.867 -7.295 1.00 60.93 P
ATOM 26 OP1 C B 264 85.913 105.161 -8.005 1.00 60.53 O
ATOM 27 OP2 C B 264 84.431 103.127 -7.470 1.00 60.03 O
ATOM 28 O5' C B 264 86.916 102.900 -7.674 1.00 59.87 O
TER
ATOM 2 P C A 264 85.709 103.867 -7.295 1.00 60.93 P
ATOM 3 OP1 C A 264 85.913 105.161 -8.005 1.00 60.53 O
ATOM 4 OP2 C A 264 84.431 103.127 -7.470 1.00 60.03 O
ATOM 5 O5' C A 264 86.916 102.900 -7.674 1.00 59.87 O
ATOM 6 C5' C A 264 88.283 103.345 -7.557 1.00 60.83 C
ATOM 7 C4' C A 264 89.228 102.215 -7.888 1.00 63.27 C
ATOM 8 O4' C A 264 89.132 101.184 -6.870 1.00 62.40 O
ATOM 9 C3' C A 264 88.929 101.491 -9.191 1.00 64.57 C
ATOM 10 O3' C A 264 89.450 102.184 -10.325 1.00 68.85 O
ATOM 11 C2' C A 264 89.558 100.124 -8.953 1.00 63.01 C
ATOM 12 O2' C A 264 90.965 100.116 -9.115 1.00 62.70 O
ATOM 13 C1' C A 264 89.220 99.902 -7.476 1.00 61.77 C
ATOM 14 N1 C A 264 87.933 99.206 -7.265 1.00 59.36 N
ATOM 15 C2 C A 264 87.909 97.799 -7.230 1.00 58.01 C
ATOM 16 O2 C A 264 88.968 97.165 -7.389 1.00 55.67 O
ATOM 17 N3 C A 264 86.729 97.170 -7.025 1.00 58.09 N
ATOM 18 C4 C A 264 85.609 97.884 -6.862 1.00 58.34 C
ATOM 19 N4 C A 264 84.466 97.223 -6.653 1.00 58.46 N
ATOM 20 C5 C A 264 85.608 99.305 -6.902 1.00 57.85 C
ATOM 21 C6 C A 264 86.776 99.918 -7.103 1.00 58.66 C
ATOM 22 P U A 265 88.636 102.165 -11.715 1.00 72.21 P
ATOM 23 OP1 U A 265 89.340 103.095 -12.638 1.00 72.01 O
ATOM 24 OP2 U A 265 87.189 102.367 -11.449 1.00 70.77 O
ATOM 25 O5' U A 265 88.842 100.670 -12.236 1.00 73.97 O
TER
ATOM 1 O3' G B 262 81.140 102.424 -2.259 1.00 56.66 O
ATOM 2 P G B 263 81.543 102.200 -3.798 1.00 56.15 P
ATOM 3 OP1 G B 263 80.904 103.294 -4.578 1.00 53.50 O
ATOM 4 OP2 G B 263 81.257 100.778 -4.148 1.00 55.46 O
ATOM 5 O5' G B 263 83.124 102.391 -3.810 1.00 53.91 O
ATOM 6 C5' G B 263 83.717 103.644 -3.451 1.00 53.49 C
ATOM 7 C4' G B 263 85.215 103.526 -3.481 1.00 55.21 C
ATOM 8 O4' G B 263 85.625 102.501 -2.540 1.00 55.56 O
ATOM 9 C3' G B 263 85.798 103.061 -4.802 1.00 57.05 C
ATOM 10 O3' G B 263 85.926 104.137 -5.725 1.00 59.33 O
ATOM 11 C2' G B 263 87.132 102.464 -4.369 1.00 56.82 C
ATOM 12 O2' G B 263 88.119 103.437 -4.089 1.00 53.83 O
ATOM 13 C1' G B 263 86.731 101.781 -3.062 1.00 56.20 C
ATOM 14 N9 G B 263 86.319 100.389 -3.237 1.00 57.49 N
ATOM 15 C8 G B 263 85.035 99.892 -3.175 1.00 57.08 C
ATOM 16 N7 G B 263 84.976 98.599 -3.350 1.00 57.26 N
ATOM 17 C5 G B 263 86.299 98.219 -3.543 1.00 57.43 C
ATOM 18 C6 G B 263 86.863 96.933 -3.779 1.00 57.46 C
ATOM 19 O6 G B 263 86.290 95.837 -3.852 1.00 57.70 O
ATOM 20 N1 G B 263 88.242 97.004 -3.933 1.00 57.06 N
ATOM 21 C2 G B 263 88.987 98.153 -3.867 1.00 56.96 C
ATOM 22 N2 G B 263 90.306 98.006 -4.059 1.00 56.38 N
ATOM 23 N3 G B 263 88.478 99.355 -3.635 1.00 56.14 N
ATOM 24 C4 G B 263 87.139 99.313 -3.485 1.00 56.46 C
ATOM 25 P C B 264 85.709 103.867 -7.295 1.00 60.93 P
ATOM 26 OP1 C B 264 85.913 105.161 -8.005 1.00 60.53 O
ATOM 27 OP2 C B 264 84.431 103.127 -7.470 1.00 60.03 O
ATOM 28 O5' C B 264 86.916 102.900 -7.674 1.00 59.87 O
TER
Atoms:
C2: (87.909,97.799,-7.230)
OP1: (85.913,105.161,-8.005)
OP2: (84.431,103.127,-7.470)
C4: (85.609,97.884,-6.862)
O5': (86.916,102.900,-7.674)
C3': (88.929,101.491,-9.191)
C1': (89.220,99.902,-7.476)
O4': (89.132,101.184,-6.870)
C5': (88.283,103.345,-7.557)
P: (85.709,103.867,-7.295)
O2: (88.968,97.165,-7.389)
C4': (89.228,102.215,-7.888)
C2': (89.558,100.124,-8.953)
O2': (90.965,100.116,-9.115)
N1: (87.933,99.206,-7.265)
N3: (86.729,97.170,-7.025)
N4: (84.466,97.223,-6.653)
C6: (86.776,99.918,-7.103)
C5: (85.608,99.305,-6.902)
O3': (89.450,102.184,-10.325)
OP1: (85.913,105.161,-8.005)
OP2: (84.431,103.127,-7.470)
C4: (85.609,97.884,-6.862)
O5': (86.916,102.900,-7.674)
C3': (88.929,101.491,-9.191)
C1': (89.220,99.902,-7.476)
O4': (89.132,101.184,-6.870)
C5': (88.283,103.345,-7.557)
P: (85.709,103.867,-7.295)
O2: (88.968,97.165,-7.389)
C4': (89.228,102.215,-7.888)
C2': (89.558,100.124,-8.953)
O2': (90.965,100.116,-9.115)
N1: (87.933,99.206,-7.265)
N3: (86.729,97.170,-7.025)
N4: (84.466,97.223,-6.653)
C6: (86.776,99.918,-7.103)
C5: (85.608,99.305,-6.902)
O3': (89.450,102.184,-10.325)
OP1: (80.904,103.294,-4.578)
OP2: (81.257,100.778,-4.148)
C3': (85.798,103.061,-4.802)
C1': (86.731,101.781,-3.062)
C5': (83.717,103.644,-3.451)
O6: (86.290,95.837,-3.852)
O4': (85.625,102.501,-2.540)
C8: (85.035,99.892,-3.175)
C2: (88.987,98.153,-3.867)
C6: (86.863,96.933,-3.779)
C5: (86.299,98.219,-3.543)
C4: (87.139,99.313,-3.485)
P: (81.543,102.200,-3.798)
C4': (85.215,103.526,-3.481)
C2': (87.132,102.464,-4.369)
O2': (88.119,103.437,-4.089)
N1: (88.242,97.004,-3.933)
N2: (90.306,98.006,-4.059)
N3: (88.478,99.355,-3.635)
N7: (84.976,98.599,-3.350)
N9: (86.319,100.389,-3.237)
O5': (83.124,102.391,-3.810)
O3': (85.926,104.137,-5.725)
OP2: (81.257,100.778,-4.148)
C3': (85.798,103.061,-4.802)
C1': (86.731,101.781,-3.062)
C5': (83.717,103.644,-3.451)
O6: (86.290,95.837,-3.852)
O4': (85.625,102.501,-2.540)
C8: (85.035,99.892,-3.175)
C2: (88.987,98.153,-3.867)
C6: (86.863,96.933,-3.779)
C5: (86.299,98.219,-3.543)
C4: (87.139,99.313,-3.485)
P: (81.543,102.200,-3.798)
C4': (85.215,103.526,-3.481)
C2': (87.132,102.464,-4.369)
O2': (88.119,103.437,-4.089)
N1: (88.242,97.004,-3.933)
N2: (90.306,98.006,-4.059)
N3: (88.478,99.355,-3.635)
N7: (84.976,98.599,-3.350)
N9: (86.319,100.389,-3.237)
O5': (83.124,102.391,-3.810)
O3': (85.926,104.137,-5.725)
Image (generated by PyMOL):