Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:A5:A6
Extra
PDB:
ATOM 1 O3' C A 4 40.710 -11.346 2.368 1.00 36.35 O
ATOM 2 P C A 5 39.338 -12.007 2.842 1.00 33.50 P
ATOM 3 OP1 C A 5 38.352 -11.878 1.737 1.00 34.25 O
ATOM 4 OP2 C A 5 39.046 -11.402 4.172 1.00 32.27 O
ATOM 5 O5' C A 5 39.702 -13.552 2.992 1.00 32.20 O
ATOM 6 C5' C A 5 40.107 -14.310 1.854 1.00 33.16 C
ATOM 7 C4' C A 5 40.519 -15.700 2.269 1.00 32.69 C
ATOM 8 O4' C A 5 41.630 -15.598 3.186 1.00 33.04 O
ATOM 9 C3' C A 5 39.464 -16.481 3.035 1.00 32.90 C
ATOM 10 O3' C A 5 38.594 -17.175 2.166 1.00 33.94 O
ATOM 11 C2' C A 5 40.296 -17.443 3.862 1.00 32.06 C
ATOM 12 O2' C A 5 40.741 -18.552 3.101 1.00 30.64 O
ATOM 13 C1' C A 5 41.478 -16.547 4.231 1.00 31.40 C
ATOM 14 N1 C A 5 41.272 -15.791 5.471 1.00 29.49 N
ATOM 15 C2 C A 5 41.237 -16.470 6.685 1.00 27.54 C
ATOM 16 O2 C A 5 41.323 -17.707 6.675 1.00 27.80 O
ATOM 17 N3 C A 5 41.107 -15.760 7.834 1.00 23.88 N
ATOM 18 C4 C A 5 41.004 -14.428 7.784 1.00 25.39 C
ATOM 19 N4 C A 5 40.912 -13.751 8.927 1.00 22.72 N
ATOM 20 C5 C A 5 41.002 -13.722 6.555 1.00 28.44 C
ATOM 21 C6 C A 5 41.136 -14.434 5.434 1.00 29.05 C
ATOM 22 P G A 6 37.146 -17.581 2.690 1.00 32.56 P
ATOM 23 OP1 G A 6 36.433 -18.412 1.678 1.00 33.04 O
ATOM 24 OP2 G A 6 36.575 -16.283 3.132 1.00 33.65 O
ATOM 25 O5' G A 6 37.443 -18.484 3.972 1.00 34.13 O
TER
ATOM 1 O3' C B 5 38.594 -17.175 2.166 1.00 33.94 O
ATOM 2 P G B 6 37.146 -17.581 2.690 1.00 32.56 P
ATOM 3 OP1 G B 6 36.433 -18.412 1.678 1.00 33.04 O
ATOM 4 OP2 G B 6 36.575 -16.283 3.132 1.00 33.65 O
ATOM 5 O5' G B 6 37.443 -18.484 3.972 1.00 34.13 O
ATOM 6 C5' G B 6 37.753 -19.872 3.836 1.00 32.29 C
ATOM 7 C4' G B 6 37.523 -20.599 5.147 1.00 31.51 C
ATOM 8 O4' G B 6 38.470 -20.151 6.153 1.00 31.20 O
ATOM 9 C3' G B 6 36.171 -20.384 5.805 1.00 30.83 C
ATOM 10 O3' G B 6 35.149 -21.179 5.218 1.00 31.44 O
ATOM 11 C2' G B 6 36.452 -20.790 7.241 1.00 30.11 C
ATOM 12 O2' G B 6 36.483 -22.196 7.369 1.00 28.25 O
ATOM 13 C1' G B 6 37.866 -20.232 7.437 1.00 29.63 C
ATOM 14 N9 G B 6 37.899 -18.900 8.032 1.00 28.91 N
ATOM 15 C8 G B 6 38.036 -17.711 7.358 1.00 28.75 C
ATOM 16 N7 G B 6 38.065 -16.673 8.149 1.00 27.53 N
ATOM 17 C5 G B 6 37.934 -17.205 9.424 1.00 26.81 C
ATOM 18 C6 G B 6 37.907 -16.560 10.682 1.00 27.11 C
ATOM 19 O6 G B 6 37.993 -15.358 10.928 1.00 26.03 O
ATOM 20 N1 G B 6 37.758 -17.464 11.721 1.00 29.42 N
ATOM 21 C2 G B 6 37.645 -18.819 11.573 1.00 31.13 C
ATOM 22 N2 G B 6 37.516 -19.508 12.714 1.00 32.33 N
ATOM 23 N3 G B 6 37.663 -19.446 10.399 1.00 28.39 N
ATOM 24 C4 G B 6 37.815 -18.578 9.373 1.00 28.04 C
ATOM 25 P G B 7 33.619 -20.702 5.329 1.00 30.47 P
ATOM 26 OP1 G B 7 32.774 -21.730 4.682 1.00 28.48 O
ATOM 27 OP2 G B 7 33.548 -19.297 4.864 1.00 29.16 O
ATOM 28 O5' G B 7 33.347 -20.728 6.897 1.00 28.01 O
TER
ATOM 2 P C A 5 39.338 -12.007 2.842 1.00 33.50 P
ATOM 3 OP1 C A 5 38.352 -11.878 1.737 1.00 34.25 O
ATOM 4 OP2 C A 5 39.046 -11.402 4.172 1.00 32.27 O
ATOM 5 O5' C A 5 39.702 -13.552 2.992 1.00 32.20 O
ATOM 6 C5' C A 5 40.107 -14.310 1.854 1.00 33.16 C
ATOM 7 C4' C A 5 40.519 -15.700 2.269 1.00 32.69 C
ATOM 8 O4' C A 5 41.630 -15.598 3.186 1.00 33.04 O
ATOM 9 C3' C A 5 39.464 -16.481 3.035 1.00 32.90 C
ATOM 10 O3' C A 5 38.594 -17.175 2.166 1.00 33.94 O
ATOM 11 C2' C A 5 40.296 -17.443 3.862 1.00 32.06 C
ATOM 12 O2' C A 5 40.741 -18.552 3.101 1.00 30.64 O
ATOM 13 C1' C A 5 41.478 -16.547 4.231 1.00 31.40 C
ATOM 14 N1 C A 5 41.272 -15.791 5.471 1.00 29.49 N
ATOM 15 C2 C A 5 41.237 -16.470 6.685 1.00 27.54 C
ATOM 16 O2 C A 5 41.323 -17.707 6.675 1.00 27.80 O
ATOM 17 N3 C A 5 41.107 -15.760 7.834 1.00 23.88 N
ATOM 18 C4 C A 5 41.004 -14.428 7.784 1.00 25.39 C
ATOM 19 N4 C A 5 40.912 -13.751 8.927 1.00 22.72 N
ATOM 20 C5 C A 5 41.002 -13.722 6.555 1.00 28.44 C
ATOM 21 C6 C A 5 41.136 -14.434 5.434 1.00 29.05 C
ATOM 22 P G A 6 37.146 -17.581 2.690 1.00 32.56 P
ATOM 23 OP1 G A 6 36.433 -18.412 1.678 1.00 33.04 O
ATOM 24 OP2 G A 6 36.575 -16.283 3.132 1.00 33.65 O
ATOM 25 O5' G A 6 37.443 -18.484 3.972 1.00 34.13 O
TER
ATOM 1 O3' C B 5 38.594 -17.175 2.166 1.00 33.94 O
ATOM 2 P G B 6 37.146 -17.581 2.690 1.00 32.56 P
ATOM 3 OP1 G B 6 36.433 -18.412 1.678 1.00 33.04 O
ATOM 4 OP2 G B 6 36.575 -16.283 3.132 1.00 33.65 O
ATOM 5 O5' G B 6 37.443 -18.484 3.972 1.00 34.13 O
ATOM 6 C5' G B 6 37.753 -19.872 3.836 1.00 32.29 C
ATOM 7 C4' G B 6 37.523 -20.599 5.147 1.00 31.51 C
ATOM 8 O4' G B 6 38.470 -20.151 6.153 1.00 31.20 O
ATOM 9 C3' G B 6 36.171 -20.384 5.805 1.00 30.83 C
ATOM 10 O3' G B 6 35.149 -21.179 5.218 1.00 31.44 O
ATOM 11 C2' G B 6 36.452 -20.790 7.241 1.00 30.11 C
ATOM 12 O2' G B 6 36.483 -22.196 7.369 1.00 28.25 O
ATOM 13 C1' G B 6 37.866 -20.232 7.437 1.00 29.63 C
ATOM 14 N9 G B 6 37.899 -18.900 8.032 1.00 28.91 N
ATOM 15 C8 G B 6 38.036 -17.711 7.358 1.00 28.75 C
ATOM 16 N7 G B 6 38.065 -16.673 8.149 1.00 27.53 N
ATOM 17 C5 G B 6 37.934 -17.205 9.424 1.00 26.81 C
ATOM 18 C6 G B 6 37.907 -16.560 10.682 1.00 27.11 C
ATOM 19 O6 G B 6 37.993 -15.358 10.928 1.00 26.03 O
ATOM 20 N1 G B 6 37.758 -17.464 11.721 1.00 29.42 N
ATOM 21 C2 G B 6 37.645 -18.819 11.573 1.00 31.13 C
ATOM 22 N2 G B 6 37.516 -19.508 12.714 1.00 32.33 N
ATOM 23 N3 G B 6 37.663 -19.446 10.399 1.00 28.39 N
ATOM 24 C4 G B 6 37.815 -18.578 9.373 1.00 28.04 C
ATOM 25 P G B 7 33.619 -20.702 5.329 1.00 30.47 P
ATOM 26 OP1 G B 7 32.774 -21.730 4.682 1.00 28.48 O
ATOM 27 OP2 G B 7 33.548 -19.297 4.864 1.00 29.16 O
ATOM 28 O5' G B 7 33.347 -20.728 6.897 1.00 28.01 O
TER
Atoms:
C2: (41.237,-16.470,6.685)
OP1: (38.352,-11.878,1.737)
OP2: (39.046,-11.402,4.172)
C4: (41.004,-14.428,7.784)
O5': (39.702,-13.552,2.992)
C3': (39.464,-16.481,3.035)
C1': (41.478,-16.547,4.231)
O4': (41.630,-15.598,3.186)
C5': (40.107,-14.310,1.854)
P: (39.338,-12.007,2.842)
O2: (41.323,-17.707,6.675)
C4': (40.519,-15.700,2.269)
C2': (40.296,-17.443,3.862)
O2': (40.741,-18.552,3.101)
N1: (41.272,-15.791,5.471)
N3: (41.107,-15.760,7.834)
N4: (40.912,-13.751,8.927)
C6: (41.136,-14.434,5.434)
C5: (41.002,-13.722,6.555)
O3': (38.594,-17.175,2.166)
OP1: (38.352,-11.878,1.737)
OP2: (39.046,-11.402,4.172)
C4: (41.004,-14.428,7.784)
O5': (39.702,-13.552,2.992)
C3': (39.464,-16.481,3.035)
C1': (41.478,-16.547,4.231)
O4': (41.630,-15.598,3.186)
C5': (40.107,-14.310,1.854)
P: (39.338,-12.007,2.842)
O2: (41.323,-17.707,6.675)
C4': (40.519,-15.700,2.269)
C2': (40.296,-17.443,3.862)
O2': (40.741,-18.552,3.101)
N1: (41.272,-15.791,5.471)
N3: (41.107,-15.760,7.834)
N4: (40.912,-13.751,8.927)
C6: (41.136,-14.434,5.434)
C5: (41.002,-13.722,6.555)
O3': (38.594,-17.175,2.166)
OP1: (36.433,-18.412,1.678)
OP2: (36.575,-16.283,3.132)
C3': (36.171,-20.384,5.805)
C1': (37.866,-20.232,7.437)
C5': (37.753,-19.872,3.836)
O6: (37.993,-15.358,10.928)
O4': (38.470,-20.151,6.153)
C8: (38.036,-17.711,7.358)
C2: (37.645,-18.819,11.573)
C6: (37.907,-16.560,10.682)
C5: (37.934,-17.205,9.424)
C4: (37.815,-18.578,9.373)
P: (37.146,-17.581,2.690)
C4': (37.523,-20.599,5.147)
C2': (36.452,-20.790,7.241)
O2': (36.483,-22.196,7.369)
N1: (37.758,-17.464,11.721)
N2: (37.516,-19.508,12.714)
N3: (37.663,-19.446,10.399)
N7: (38.065,-16.673,8.149)
N9: (37.899,-18.900,8.032)
O5': (37.443,-18.484,3.972)
O3': (35.149,-21.179,5.218)
OP2: (36.575,-16.283,3.132)
C3': (36.171,-20.384,5.805)
C1': (37.866,-20.232,7.437)
C5': (37.753,-19.872,3.836)
O6: (37.993,-15.358,10.928)
O4': (38.470,-20.151,6.153)
C8: (38.036,-17.711,7.358)
C2: (37.645,-18.819,11.573)
C6: (37.907,-16.560,10.682)
C5: (37.934,-17.205,9.424)
C4: (37.815,-18.578,9.373)
P: (37.146,-17.581,2.690)
C4': (37.523,-20.599,5.147)
C2': (36.452,-20.790,7.241)
O2': (36.483,-22.196,7.369)
N1: (37.758,-17.464,11.721)
N2: (37.516,-19.508,12.714)
N3: (37.663,-19.446,10.399)
N7: (38.065,-16.673,8.149)
N9: (37.899,-18.900,8.032)
O5': (37.443,-18.484,3.972)
O3': (35.149,-21.179,5.218)
Image (generated by PyMOL):