Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12418:12419
Extra
PDB:
ATOM 1 O3' U A2417 6.771 -68.765 34.014 1.00 56.91 O
ATOM 2 P C A2418 5.236 -68.345 33.850 1.00 58.11 P
ATOM 3 OP1 C A2418 4.405 -69.444 34.405 1.00 58.53 O
ATOM 4 OP2 C A2418 5.070 -67.942 32.428 1.00 58.35 O
ATOM 5 O5' C A2418 5.110 -67.070 34.781 1.00 57.43 O
ATOM 6 C5' C A2418 5.535 -67.100 36.141 1.00 57.05 C
ATOM 7 C4' C A2418 6.241 -65.823 36.511 1.00 56.38 C
ATOM 8 O4' C A2418 7.576 -65.838 35.942 1.00 56.30 O
ATOM 9 C3' C A2418 5.599 -64.551 35.977 1.00 56.17 C
ATOM 10 O3' C A2418 4.561 -64.048 36.820 1.00 55.98 O
ATOM 11 C2' C A2418 6.773 -63.600 35.804 1.00 55.68 C
ATOM 12 O2' C A2418 7.033 -62.894 36.999 1.00 55.13 O
ATOM 13 C1' C A2418 7.944 -64.557 35.518 1.00 55.89 C
ATOM 14 N1 C A2418 8.244 -64.623 34.086 1.00 56.21 N
ATOM 15 C2 C A2418 8.837 -63.510 33.476 1.00 55.88 C
ATOM 16 O2 C A2418 9.137 -62.541 34.196 1.00 55.32 O
ATOM 17 N3 C A2418 9.080 -63.509 32.146 1.00 56.17 N
ATOM 18 C4 C A2418 8.767 -64.583 31.433 1.00 56.78 C
ATOM 19 N4 C A2418 9.030 -64.588 30.107 1.00 57.08 N
ATOM 20 C5 C A2418 8.169 -65.727 32.054 1.00 57.12 C
ATOM 21 C6 C A2418 7.913 -65.715 33.367 1.00 56.82 C
ATOM 22 P A A2419 3.204 -63.442 36.176 1.00 58.31 P
ATOM 23 OP1 A A2419 2.254 -63.183 37.290 1.00 58.14 O
ATOM 24 OP2 A A2419 2.806 -64.365 35.113 1.00 58.95 O
ATOM 25 O5' A A2419 3.673 -62.057 35.543 1.00 57.91 O
TER
ATOM 1 O3' C B2418 4.561 -64.048 36.820 1.00 55.98 O
ATOM 2 P A B2419 3.204 -63.442 36.176 1.00 58.31 P
ATOM 3 OP1 A B2419 2.254 -63.183 37.290 1.00 58.14 O
ATOM 4 OP2 A B2419 2.806 -64.365 35.113 1.00 58.95 O
ATOM 5 O5' A B2419 3.673 -62.057 35.543 1.00 57.91 O
ATOM 6 C5' A B2419 4.043 -60.971 36.383 1.00 57.29 C
ATOM 7 C4' A B2419 4.380 -59.726 35.597 1.00 57.02 C
ATOM 8 O4' A B2419 5.567 -59.951 34.798 1.00 57.07 O
ATOM 9 C3' A B2419 3.345 -59.255 34.587 1.00 57.30 C
ATOM 10 O3' A B2419 2.299 -58.529 35.192 1.00 57.12 O
ATOM 11 C2' A B2419 4.184 -58.406 33.649 1.00 57.11 C
ATOM 12 O2' A B2419 4.445 -57.140 34.238 1.00 56.53 O
ATOM 13 C1' A B2419 5.496 -59.194 33.611 1.00 57.13 C
ATOM 14 N9 A B2419 5.534 -60.115 32.483 1.00 57.70 N
ATOM 15 C8 A B2419 5.528 -61.473 32.517 1.00 58.13 C
ATOM 16 N7 A B2419 5.572 -62.006 31.317 1.00 58.61 N
ATOM 17 C5 A B2419 5.594 -60.923 30.460 1.00 58.47 C
ATOM 18 C6 A B2419 5.626 -60.822 29.066 1.00 58.81 C
ATOM 19 N6 A B2419 5.630 -61.855 28.219 1.00 59.39 N
ATOM 20 N1 A B2419 5.657 -59.578 28.556 1.00 58.55 N
ATOM 21 C2 A B2419 5.654 -58.530 29.395 1.00 57.99 C
ATOM 22 N3 A B2419 5.617 -58.499 30.724 1.00 57.63 N
ATOM 23 C4 A B2419 5.584 -59.749 31.185 1.00 57.90 C
ATOM 24 P U B2420 0.770 -58.796 34.779 1.00 58.31 P
ATOM 25 OP1 U B2420 -0.037 -57.728 35.453 1.00 57.98 O
ATOM 26 OP2 U B2420 0.461 -60.224 35.084 1.00 58.75 O
ATOM 27 O5' U B2420 0.781 -58.580 33.191 1.00 58.63 O
TER
ATOM 2 P C A2418 5.236 -68.345 33.850 1.00 58.11 P
ATOM 3 OP1 C A2418 4.405 -69.444 34.405 1.00 58.53 O
ATOM 4 OP2 C A2418 5.070 -67.942 32.428 1.00 58.35 O
ATOM 5 O5' C A2418 5.110 -67.070 34.781 1.00 57.43 O
ATOM 6 C5' C A2418 5.535 -67.100 36.141 1.00 57.05 C
ATOM 7 C4' C A2418 6.241 -65.823 36.511 1.00 56.38 C
ATOM 8 O4' C A2418 7.576 -65.838 35.942 1.00 56.30 O
ATOM 9 C3' C A2418 5.599 -64.551 35.977 1.00 56.17 C
ATOM 10 O3' C A2418 4.561 -64.048 36.820 1.00 55.98 O
ATOM 11 C2' C A2418 6.773 -63.600 35.804 1.00 55.68 C
ATOM 12 O2' C A2418 7.033 -62.894 36.999 1.00 55.13 O
ATOM 13 C1' C A2418 7.944 -64.557 35.518 1.00 55.89 C
ATOM 14 N1 C A2418 8.244 -64.623 34.086 1.00 56.21 N
ATOM 15 C2 C A2418 8.837 -63.510 33.476 1.00 55.88 C
ATOM 16 O2 C A2418 9.137 -62.541 34.196 1.00 55.32 O
ATOM 17 N3 C A2418 9.080 -63.509 32.146 1.00 56.17 N
ATOM 18 C4 C A2418 8.767 -64.583 31.433 1.00 56.78 C
ATOM 19 N4 C A2418 9.030 -64.588 30.107 1.00 57.08 N
ATOM 20 C5 C A2418 8.169 -65.727 32.054 1.00 57.12 C
ATOM 21 C6 C A2418 7.913 -65.715 33.367 1.00 56.82 C
ATOM 22 P A A2419 3.204 -63.442 36.176 1.00 58.31 P
ATOM 23 OP1 A A2419 2.254 -63.183 37.290 1.00 58.14 O
ATOM 24 OP2 A A2419 2.806 -64.365 35.113 1.00 58.95 O
ATOM 25 O5' A A2419 3.673 -62.057 35.543 1.00 57.91 O
TER
ATOM 1 O3' C B2418 4.561 -64.048 36.820 1.00 55.98 O
ATOM 2 P A B2419 3.204 -63.442 36.176 1.00 58.31 P
ATOM 3 OP1 A B2419 2.254 -63.183 37.290 1.00 58.14 O
ATOM 4 OP2 A B2419 2.806 -64.365 35.113 1.00 58.95 O
ATOM 5 O5' A B2419 3.673 -62.057 35.543 1.00 57.91 O
ATOM 6 C5' A B2419 4.043 -60.971 36.383 1.00 57.29 C
ATOM 7 C4' A B2419 4.380 -59.726 35.597 1.00 57.02 C
ATOM 8 O4' A B2419 5.567 -59.951 34.798 1.00 57.07 O
ATOM 9 C3' A B2419 3.345 -59.255 34.587 1.00 57.30 C
ATOM 10 O3' A B2419 2.299 -58.529 35.192 1.00 57.12 O
ATOM 11 C2' A B2419 4.184 -58.406 33.649 1.00 57.11 C
ATOM 12 O2' A B2419 4.445 -57.140 34.238 1.00 56.53 O
ATOM 13 C1' A B2419 5.496 -59.194 33.611 1.00 57.13 C
ATOM 14 N9 A B2419 5.534 -60.115 32.483 1.00 57.70 N
ATOM 15 C8 A B2419 5.528 -61.473 32.517 1.00 58.13 C
ATOM 16 N7 A B2419 5.572 -62.006 31.317 1.00 58.61 N
ATOM 17 C5 A B2419 5.594 -60.923 30.460 1.00 58.47 C
ATOM 18 C6 A B2419 5.626 -60.822 29.066 1.00 58.81 C
ATOM 19 N6 A B2419 5.630 -61.855 28.219 1.00 59.39 N
ATOM 20 N1 A B2419 5.657 -59.578 28.556 1.00 58.55 N
ATOM 21 C2 A B2419 5.654 -58.530 29.395 1.00 57.99 C
ATOM 22 N3 A B2419 5.617 -58.499 30.724 1.00 57.63 N
ATOM 23 C4 A B2419 5.584 -59.749 31.185 1.00 57.90 C
ATOM 24 P U B2420 0.770 -58.796 34.779 1.00 58.31 P
ATOM 25 OP1 U B2420 -0.037 -57.728 35.453 1.00 57.98 O
ATOM 26 OP2 U B2420 0.461 -60.224 35.084 1.00 58.75 O
ATOM 27 O5' U B2420 0.781 -58.580 33.191 1.00 58.63 O
TER
Atoms:
C2: (8.837,-63.510,33.476)
OP1: (4.405,-69.444,34.405)
OP2: (5.070,-67.942,32.428)
C4: (8.767,-64.583,31.433)
O5': (5.110,-67.070,34.781)
C3': (5.599,-64.551,35.977)
C1': (7.944,-64.557,35.518)
O4': (7.576,-65.838,35.942)
C5': (5.535,-67.100,36.141)
P: (5.236,-68.345,33.850)
O2: (9.137,-62.541,34.196)
C4': (6.241,-65.823,36.511)
C2': (6.773,-63.600,35.804)
O2': (7.033,-62.894,36.999)
N1: (8.244,-64.623,34.086)
N3: (9.080,-63.509,32.146)
N4: (9.030,-64.588,30.107)
C6: (7.913,-65.715,33.367)
C5: (8.169,-65.727,32.054)
O3': (4.561,-64.048,36.820)
OP1: (4.405,-69.444,34.405)
OP2: (5.070,-67.942,32.428)
C4: (8.767,-64.583,31.433)
O5': (5.110,-67.070,34.781)
C3': (5.599,-64.551,35.977)
C1': (7.944,-64.557,35.518)
O4': (7.576,-65.838,35.942)
C5': (5.535,-67.100,36.141)
P: (5.236,-68.345,33.850)
O2: (9.137,-62.541,34.196)
C4': (6.241,-65.823,36.511)
C2': (6.773,-63.600,35.804)
O2': (7.033,-62.894,36.999)
N1: (8.244,-64.623,34.086)
N3: (9.080,-63.509,32.146)
N4: (9.030,-64.588,30.107)
C6: (7.913,-65.715,33.367)
C5: (8.169,-65.727,32.054)
O3': (4.561,-64.048,36.820)
OP1: (2.254,-63.183,37.290)
OP2: (2.806,-64.365,35.113)
C3': (3.345,-59.255,34.587)
C1': (5.496,-59.194,33.611)
C5': (4.043,-60.971,36.383)
O4': (5.567,-59.951,34.798)
C8: (5.528,-61.473,32.517)
O2': (4.445,-57.140,34.238)
C6: (5.626,-60.822,29.066)
C5: (5.594,-60.923,30.460)
C4: (5.584,-59.749,31.185)
P: (3.204,-63.442,36.176)
C4': (4.380,-59.726,35.597)
C2': (4.184,-58.406,33.649)
C2: (5.654,-58.530,29.395)
N1: (5.657,-59.578,28.556)
N3: (5.617,-58.499,30.724)
N6: (5.630,-61.855,28.219)
N7: (5.572,-62.006,31.317)
N9: (5.534,-60.115,32.483)
O5': (3.673,-62.057,35.543)
O3': (2.299,-58.529,35.192)
OP2: (2.806,-64.365,35.113)
C3': (3.345,-59.255,34.587)
C1': (5.496,-59.194,33.611)
C5': (4.043,-60.971,36.383)
O4': (5.567,-59.951,34.798)
C8: (5.528,-61.473,32.517)
O2': (4.445,-57.140,34.238)
C6: (5.626,-60.822,29.066)
C5: (5.594,-60.923,30.460)
C4: (5.584,-59.749,31.185)
P: (3.204,-63.442,36.176)
C4': (4.380,-59.726,35.597)
C2': (4.184,-58.406,33.649)
C2: (5.654,-58.530,29.395)
N1: (5.657,-59.578,28.556)
N3: (5.617,-58.499,30.724)
N6: (5.630,-61.855,28.219)
N7: (5.572,-62.006,31.317)
N9: (5.534,-60.115,32.483)
O5': (3.673,-62.057,35.543)
O3': (2.299,-58.529,35.192)
Image (generated by PyMOL):